Clone Name | rbasd2i21 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | gb|BT009573.1| Triticum aestivum clone wre1n.pk0027.d4:fis, full... | 135 | 2e-29 | 2 | gb|AY111650.1| Zea mays CL15598_1 mRNA sequence | 52 | 3e-04 | 3 | dbj|AK102755.1| Oryza sativa (japonica cultivar-group) cDNA clon... | 38 | 3.9 | 4 | emb|AL731734.13| Mouse DNA sequence from clone RP23-26C7 on chro... | 38 | 3.9 |
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>gb|BT009573.1| Triticum aestivum clone wre1n.pk0027.d4:fis, full insert mRNA sequence Length = 1042 Score = 135 bits (68), Expect = 2e-29 Identities = 84/91 (92%) Strand = Plus / Minus Query: 1 tgatgcagagcacgaggactattaccattaagngctgnatgatacacacgcttttnagcc 60 |||||||||||||||||||||||||||||||| || | ||||||||||||||||| |||| Sbjct: 780 tgatgcagagcacgaggactattaccattaagtgccgcatgatacacacgcttttcagcc 721 Query: 61 agcccannattagaaagaactaaattaccct 91 |||||| |||||| |||||||||||||||| Sbjct: 720 agcccaagattagacagaactaaattaccct 690
>gb|AY111650.1| Zea mays CL15598_1 mRNA sequence Length = 920 Score = 52.0 bits (26), Expect = 3e-04 Identities = 49/58 (84%) Strand = Plus / Plus Query: 34 gctgnatgatacacacgcttttnagccagcccannattagaaagaactaaattaccct 91 |||| ||| ||||| ||||| | ||||||||| |||||||||||||||||| |||| Sbjct: 234 gctgcatggtacacgcgcttctctgccagcccaatattagaaagaactaaattgccct 291
>dbj|AK102755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A02, full insert sequence Length = 2522 Score = 38.2 bits (19), Expect = 3.9 Identities = 32/37 (86%) Strand = Plus / Minus Query: 17 gactattaccattaagngctgnatgatacacacgctt 53 ||||||||||||| || || | |||||| |||||||| Sbjct: 2296 gactattaccattcagtgcagcatgatatacacgctt 2260
>emb|AL731734.13| Mouse DNA sequence from clone RP23-26C7 on chromosome 2, complete sequence Length = 88618 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 tagaaagaactaaattacc 89 ||||||||||||||||||| Sbjct: 9629 tagaaagaactaaattacc 9611 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 355,254 Number of Sequences: 3902068 Number of extensions: 355254 Number of successful extensions: 20941 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20937 Number of HSP's gapped (non-prelim): 4 length of query: 91 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 70 effective length of database: 17,151,101,840 effective search space: 1200577128800 effective search space used: 1200577128800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)