ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2i21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009573.1| Triticum aestivum clone wre1n.pk0027.d4:fis, full... 135 2e-29
2gb|AY111650.1| Zea mays CL15598_1 mRNA sequence 52 3e-04
3dbj|AK102755.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 3.9
4emb|AL731734.13| Mouse DNA sequence from clone RP23-26C7 on chro... 38 3.9

>gb|BT009573.1| Triticum aestivum clone wre1n.pk0027.d4:fis, full insert mRNA
           sequence
          Length = 1042

 Score =  135 bits (68), Expect = 2e-29
 Identities = 84/91 (92%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatgcagagcacgaggactattaccattaagngctgnatgatacacacgcttttnagcc 60
           |||||||||||||||||||||||||||||||| || | ||||||||||||||||| ||||
Sbjct: 780 tgatgcagagcacgaggactattaccattaagtgccgcatgatacacacgcttttcagcc 721

                                          
Query: 61  agcccannattagaaagaactaaattaccct 91
           ||||||  |||||| ||||||||||||||||
Sbjct: 720 agcccaagattagacagaactaaattaccct 690



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>gb|AY111650.1| Zea mays CL15598_1 mRNA sequence
          Length = 920

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 34  gctgnatgatacacacgcttttnagccagcccannattagaaagaactaaattaccct 91
           |||| ||| ||||| ||||| |  |||||||||  |||||||||||||||||| ||||
Sbjct: 234 gctgcatggtacacgcgcttctctgccagcccaatattagaaagaactaaattgccct 291



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>dbj|AK102755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A02, full
            insert sequence
          Length = 2522

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 32/37 (86%)
 Strand = Plus / Minus

                                                 
Query: 17   gactattaccattaagngctgnatgatacacacgctt 53
            ||||||||||||| || || | |||||| ||||||||
Sbjct: 2296 gactattaccattcagtgcagcatgatatacacgctt 2260



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>emb|AL731734.13| Mouse DNA sequence from clone RP23-26C7 on chromosome 2, complete
            sequence
          Length = 88618

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 71   tagaaagaactaaattacc 89
            |||||||||||||||||||
Sbjct: 9629 tagaaagaactaaattacc 9611


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 355,254
Number of Sequences: 3902068
Number of extensions: 355254
Number of successful extensions: 20941
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20937
Number of HSP's gapped (non-prelim): 4
length of query: 91
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 70
effective length of database: 17,151,101,840
effective search space: 1200577128800
effective search space used: 1200577128800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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