ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2i20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PP2C_LEICH (P36982) Protein phosphatase 2C (EC 3.1.3.16) (PP2C) 31 1.3
2PURQ_THEVO (Q97C36) Phosphoribosylformylglycinamidine synthase I... 28 6.4
3WDR19_HUMAN (Q8NEZ3) WD-repeat protein 19 28 8.3
4NRG3_HUMAN (P56975) Pro-neuregulin-3, membrane-bound isoform pre... 28 8.3

>PP2C_LEICH (P36982) Protein phosphatase 2C (EC 3.1.3.16) (PP2C)|
          Length = 406

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -1

Query: 412 VKSTKDPQAAAKRLTTEALARKSKDDISCIVIRFR 308
           +++  D    A R+  EA+ R S+D+ISC++++F+
Sbjct: 241 LETCNDLAEVAGRVCEEAIERGSRDNISCMIVQFK 275



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>PURQ_THEVO (Q97C36) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)|
           (FGAM synthase I)
          Length = 258

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 227 SSENQITTPHRSWIEKLKWSVNG-VDSAAEADNDAGDIVLALP 352
           S+EN +T       ++  W+ NG +DS A   N+AG+++  +P
Sbjct: 184 SNENDVT-------DEYPWNPNGSIDSVASLSNEAGNVIGLMP 219



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>WDR19_HUMAN (Q8NEZ3) WD-repeat protein 19|
          Length = 1342

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 81   AHTIHYSLLAPSLKTLHRLPMKCSTNLKPVHSYIQVQ 191
            AH + +S+ A       ++P + +TNL  +HSYI V+
Sbjct: 1125 AHDVLFSMYAELKSQKIKIPSEMATNLMILHSYILVK 1161



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>NRG3_HUMAN (P56975) Pro-neuregulin-3, membrane-bound isoform precursor|
           (Pro-NRG3) [Contains: Neuregulin-3 (NRG-3)]
          Length = 720

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +3

Query: 6   TTRCSTDWPGT--YGGVIYAQMNDRHPAHTIHYSLLAPSLKTLHRLPMKCSTNLKPVHSY 179
           TT  ST  P T   GG   ++  +R        +  AP+    HR+P++ S       + 
Sbjct: 129 TTTTSTTSPATPSAGGAASSRTPNRISTRLTTITR-APTRFPGHRVPIRASPRSTTARNT 187

Query: 180 IQVQTIPATTT*FEFGAARIRSRPHI 257
               T+P+TT  F F ++ + SRP +
Sbjct: 188 AAPATVPSTTAPF-FSSSTLGSRPPV 212


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,691,740
Number of Sequences: 219361
Number of extensions: 1065215
Number of successful extensions: 2989
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2988
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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