Clone Name | rbasd2i20 |
---|---|
Clone Library Name | barley_pub |
>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03, complete sequence Length = 179798 Score = 151 bits (76), Expect = 2e-33 Identities = 103/112 (91%) Strand = Plus / Plus Query: 301 ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 360 ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct: 177010 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 177069 Query: 361 cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcac 412 | ||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 177070 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcac 177121
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 151 bits (76), Expect = 2e-33 Identities = 103/112 (91%) Strand = Plus / Plus Query: 301 ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 360 ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct: 6857 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 6916 Query: 361 cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcac 412 | ||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 6917 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcac 6968
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 151 bits (76), Expect = 2e-33 Identities = 103/112 (91%) Strand = Plus / Plus Query: 301 ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 360 ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct: 30909489 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 30909548 Query: 361 cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcac 412 | ||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 30909549 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcac 30909600
>dbj|AK070129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047A13, full insert sequence Length = 1585 Score = 151 bits (76), Expect = 2e-33 Identities = 103/112 (91%) Strand = Plus / Minus Query: 301 ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 360 ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct: 1229 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 1170 Query: 361 cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcac 412 | ||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 1169 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcac 1118
>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete sequence Length = 134586 Score = 151 bits (76), Expect = 2e-33 Identities = 103/112 (91%) Strand = Plus / Plus Query: 301 ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 360 ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct: 86483 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 86542 Query: 361 cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcac 412 | ||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 86543 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcac 86594
>ref|XM_473840.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 954 Score = 149 bits (75), Expect = 8e-33 Identities = 102/111 (91%) Strand = Plus / Minus Query: 302 tcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcgc 361 |||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||| Sbjct: 954 tcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcgc 895 Query: 362 ctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcac 412 ||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 894 ttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcac 844
>gb|AC116815.15| Mus musculus chromosome 5, clone RP24-357H22, complete sequence Length = 179737 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Minus Query: 46 gtgtgatatatgcacagatgaatgatagac 75 |||||||||||||||| |||||||| |||| Sbjct: 93461 gtgtgatatatgcacacatgaatgagagac 93432
>ref|XM_368607.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00637.4) partial mRNA Length = 1875 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 372 agccgcttggctgctgcctggg 393 |||||||||||||||||||||| Sbjct: 1068 agccgcttggctgctgcctggg 1047
>gb|AC157929.6| Mus musculus chromosome 5, clone RP24-122G17, complete sequence Length = 193178 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Minus Query: 46 gtgtgatatatgcacagatgaatgatagac 75 |||||||||||||||| |||||||| |||| Sbjct: 184498 gtgtgatatatgcacacatgaatgagagac 184469
>gb|DQ190053.1| Cystobacter fuscus MmxC (mmxC) and MmxB (mmxB) genes, partial cds Length = 12757 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 ctcgcgagcgcctcggtcgtc 371 ||||||||||||||||||||| Sbjct: 9636 ctcgcgagcgcctcggtcgtc 9616
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 agcgcctcggtcgtcagccgcttg 380 |||||||||||||||||| ||||| Sbjct: 235302 agcgcctcggtcgtcagcggcttg 235325
>ref|XM_478310.1| Oryza sativa (japonica cultivar-group), mRNA Length = 888 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 320 aacgatgcaggagatatcgtccttgctcttcc 351 ||||||||||||||| ||||| ||||| |||| Sbjct: 870 aacgatgcaggagatgtcgtctttgcttttcc 839
>gb|AY985531.1| Uncultured bacterium clone C506 16S ribosomal RNA gene, partial sequence Length = 1386 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aacgagatgttccacagatt 27 |||||||||||||||||||| Sbjct: 38 aacgagatgttccacagatt 57
>gb|AC164177.6| Mus musculus 10 BAC RP23-102O12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196230 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 tctactaatctcaagcctgt 169 |||||||||||||||||||| Sbjct: 53571 tctactaatctcaagcctgt 53552
>gb|AC153969.12| Mus musculus 10 BAC RP24-86H7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 209599 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 tctactaatctcaagcctgt 169 |||||||||||||||||||| Sbjct: 201096 tctactaatctcaagcctgt 201077
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 320 aacgatgcaggagatatcgtccttgctcttcc 351 ||||||||||||||| ||||| ||||| |||| Sbjct: 19190004 aacgatgcaggagatgtcgtctttgcttttcc 19190035
>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0062D12 Length = 155408 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 320 aacgatgcaggagatatcgtccttgctcttcc 351 ||||||||||||||| ||||| ||||| |||| Sbjct: 113399 aacgatgcaggagatgtcgtctttgcttttcc 113430 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,814,671 Number of Sequences: 3902068 Number of extensions: 2814671 Number of successful extensions: 47484 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47415 Number of HSP's gapped (non-prelim): 69 length of query: 415 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 393 effective length of database: 17,147,199,772 effective search space: 6738849510396 effective search space used: 6738849510396 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)