ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2i20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 151 2e-33
2emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4,... 151 2e-33
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
4dbj|AK070129.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
5emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 151 2e-33
6ref|XM_473840.1| Oryza sativa (japonica cultivar-group), predic... 149 8e-33
7gb|AC116815.15| Mus musculus chromosome 5, clone RP24-357H22, co... 44 0.36
8ref|XM_368607.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 44 0.36
9gb|AC157929.6| Mus musculus chromosome 5, clone RP24-122G17, com... 44 0.36
10gb|DQ190053.1| Cystobacter fuscus MmxC (mmxC) and MmxB (mmxB) ge... 42 1.4
11gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.6
12ref|XM_478310.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
13gb|AY985531.1| Uncultured bacterium clone C506 16S ribosomal RNA... 40 5.6
14gb|AC164177.6| Mus musculus 10 BAC RP23-102O12 (Roswell Park Can... 40 5.6
15gb|AC153969.12| Mus musculus 10 BAC RP24-86H7 (Roswell Park Canc... 40 5.6
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
17dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6

>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score =  151 bits (76), Expect = 2e-33
 Identities = 103/112 (91%)
 Strand = Plus / Plus

                                                                          
Query: 301    ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 360
              ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct: 177010 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 177069

                                                                  
Query: 361    cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcac 412
              | ||||||||||| ||||| ||||||||||||||||||||  ||||||||||
Sbjct: 177070 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcac 177121



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>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
            complete sequence
          Length = 150551

 Score =  151 bits (76), Expect = 2e-33
 Identities = 103/112 (91%)
 Strand = Plus / Plus

                                                                        
Query: 301  ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 360
            ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct: 6857 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 6916

                                                                
Query: 361  cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcac 412
            | ||||||||||| ||||| ||||||||||||||||||||  ||||||||||
Sbjct: 6917 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcac 6968



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  151 bits (76), Expect = 2e-33
 Identities = 103/112 (91%)
 Strand = Plus / Plus

                                                                            
Query: 301      ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 360
                ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct: 30909489 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 30909548

                                                                    
Query: 361      cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcac 412
                | ||||||||||| ||||| ||||||||||||||||||||  ||||||||||
Sbjct: 30909549 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcac 30909600



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>dbj|AK070129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047A13, full
            insert sequence
          Length = 1585

 Score =  151 bits (76), Expect = 2e-33
 Identities = 103/112 (91%)
 Strand = Plus / Minus

                                                                        
Query: 301  ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 360
            ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct: 1229 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 1170

                                                                
Query: 361  cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcac 412
            | ||||||||||| ||||| ||||||||||||||||||||  ||||||||||
Sbjct: 1169 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcac 1118



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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score =  151 bits (76), Expect = 2e-33
 Identities = 103/112 (91%)
 Strand = Plus / Plus

                                                                         
Query: 301   ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 360
             ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct: 86483 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 86542

                                                                 
Query: 361   cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcac 412
             | ||||||||||| ||||| ||||||||||||||||||||  ||||||||||
Sbjct: 86543 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcac 86594



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>ref|XM_473840.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score =  149 bits (75), Expect = 8e-33
 Identities = 102/111 (91%)
 Strand = Plus / Minus

                                                                       
Query: 302 tcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcgc 361
           |||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct: 954 tcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcgc 895

                                                              
Query: 362 ctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcac 412
            ||||||||||| ||||| ||||||||||||||||||||  ||||||||||
Sbjct: 894 ttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcac 844



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>gb|AC116815.15| Mus musculus chromosome 5, clone RP24-357H22, complete sequence
          Length = 179737

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 46    gtgtgatatatgcacagatgaatgatagac 75
             |||||||||||||||| |||||||| ||||
Sbjct: 93461 gtgtgatatatgcacacatgaatgagagac 93432



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>ref|XM_368607.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
            (MG00637.4) partial mRNA
          Length = 1875

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 372  agccgcttggctgctgcctggg 393
            ||||||||||||||||||||||
Sbjct: 1068 agccgcttggctgctgcctggg 1047



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>gb|AC157929.6| Mus musculus chromosome 5, clone RP24-122G17, complete sequence
          Length = 193178

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 46     gtgtgatatatgcacagatgaatgatagac 75
              |||||||||||||||| |||||||| ||||
Sbjct: 184498 gtgtgatatatgcacacatgaatgagagac 184469



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>gb|DQ190053.1| Cystobacter fuscus MmxC (mmxC) and MmxB (mmxB) genes, partial cds
          Length = 12757

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 351  ctcgcgagcgcctcggtcgtc 371
            |||||||||||||||||||||
Sbjct: 9636 ctcgcgagcgcctcggtcgtc 9616



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 357    agcgcctcggtcgtcagccgcttg 380
              |||||||||||||||||| |||||
Sbjct: 235302 agcgcctcggtcgtcagcggcttg 235325



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>ref|XM_478310.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 888

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 320 aacgatgcaggagatatcgtccttgctcttcc 351
           ||||||||||||||| ||||| ||||| ||||
Sbjct: 870 aacgatgcaggagatgtcgtctttgcttttcc 839



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>gb|AY985531.1| Uncultured bacterium clone C506 16S ribosomal RNA gene, partial
          sequence
          Length = 1386

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 8  aacgagatgttccacagatt 27
          ||||||||||||||||||||
Sbjct: 38 aacgagatgttccacagatt 57



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>gb|AC164177.6| Mus musculus 10 BAC RP23-102O12 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 196230

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   tctactaatctcaagcctgt 169
             ||||||||||||||||||||
Sbjct: 53571 tctactaatctcaagcctgt 53552



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>gb|AC153969.12| Mus musculus 10 BAC RP24-86H7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 209599

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    tctactaatctcaagcctgt 169
              ||||||||||||||||||||
Sbjct: 201096 tctactaatctcaagcctgt 201077



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 320      aacgatgcaggagatatcgtccttgctcttcc 351
                ||||||||||||||| ||||| ||||| ||||
Sbjct: 19190004 aacgatgcaggagatgtcgtctttgcttttcc 19190035



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>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0062D12
          Length = 155408

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 320    aacgatgcaggagatatcgtccttgctcttcc 351
              ||||||||||||||| ||||| ||||| ||||
Sbjct: 113399 aacgatgcaggagatgtcgtctttgcttttcc 113430


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,814,671
Number of Sequences: 3902068
Number of extensions: 2814671
Number of successful extensions: 47484
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47415
Number of HSP's gapped (non-prelim): 69
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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