Clone Name | rbasd2i12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 950 bits (479), Expect = 0.0 Identities = 504/511 (98%), Gaps = 1/511 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct: 76974 atatacgtaaaacacaatctactaa-attaattctttgatctcaatttcgcctactagta 77032 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 77033 tttataatacttcaggagctaatgaaactattttggtaaaattcaatcctctcaattcct 77092 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 77093 cggcaatcgcgccaaaaactcgagttccttttggattgcctttttgatcaattataaccg 77152 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 77153 cagcattgtcatcatagcggattattataccgtcttcgcatttgaactctttacatgtac 77212 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77213 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 77272 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77273 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 77332 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct: 77333 tgactcgaatacacatcaattttcgagctccactattatcggctacatttaaaagggtct 77392 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77393 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 77452 Query: 481 atattgtctttccagaaagaaaaaccgggca 511 ||||||||||||||||||||||||||||||| Sbjct: 77453 atattgtctttccagaaagaaaaaccgggca 77483 Score = 256 bits (129), Expect = 8e-65 Identities = 132/133 (99%) Strand = Plus / Plus Query: 520 cttccataccccttttagggttctatatctctaatcgaataaattgacttcgtatgggca 579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77496 cttccataccccttttagggttctatatctctaatcgaataaattgacttcgtatgggca 77555 Query: 580 ttttactggccgctatggagatagctgctctagctacagtttcagatactccccccattt 639 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77556 ttttactggcagctatggagatagctgctctagctacagtttcagatactccccccattt 77615 Query: 640 cataaagtatacg 652 ||||||||||||| Sbjct: 77616 cataaagtatacg 77628
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 902 bits (455), Expect = 0.0 Identities = 601/650 (92%), Gaps = 3/650 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| | ||||||||||||||| || |||||||||||| || ||| ||||||||| Sbjct: 80 atatacgtgagacacaatctactaatttt--ttctttgatctatatctcgtctactagta 137 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| | Sbjct: 138 tttataatacttcaggagctaatgaaactattttagtataattcaattctcttaattctt 197 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| | Sbjct: 198 cggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataactg 257 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | ||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||| Sbjct: 258 ctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgtac 317 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 318 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 377 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 378 tgattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctccta 437 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 438 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 497 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 498 gaggttgaatcatattattttgatttccatttgttatttcaatgcaaaaggatgaaagaa 557 Query: 481 atattgtctttccagaaagaaaaaccgggcannnnnnnncttccatacccct-tttaggg 539 |||||||||||||||||||||||||| || |||| |||| ||| ||| ||| Sbjct: 558 atattgtctttccagaaagaaaaaccaggggttttttatcttcaatactcctttttgggg 617 Query: 540 ttctatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggag 599 ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| Sbjct: 618 ttctatatctctaatcgaagaaattgacttcgtatgggcattttactggcagctatagag 677 Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||||||||||||||||||||||| |||||||| | ||||||||||||||| Sbjct: 678 atagctgctctagctacagtttcggatactccgctcatttcataaagtat 727
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 902 bits (455), Expect = 0.0 Identities = 601/650 (92%), Gaps = 3/650 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| | ||||||||||||||| || |||||||||||| || ||| ||||||||| Sbjct: 79637 atatacgtgagacacaatctactaatttt--ttctttgatctatatctcgtctactagta 79694 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| | Sbjct: 79695 tttataatacttcaggagctaatgaaactattttagtataattcaattctcttaattctt 79754 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| | Sbjct: 79755 cggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataactg 79814 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | ||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||| Sbjct: 79815 ctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgtac 79874 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 79875 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 79934 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 79935 tgattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctccta 79994 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 79995 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 80054 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 80055 gaggttgaatcatattattttgatttccatttgttatttcaatgcaaaaggatgaaagaa 80114 Query: 481 atattgtctttccagaaagaaaaaccgggcannnnnnnncttccatacccct-tttaggg 539 |||||||||||||||||||||||||| || |||| |||| ||| ||| ||| Sbjct: 80115 atattgtctttccagaaagaaaaaccaggggttttttatcttcaatactcctttttgggg 80174 Query: 540 ttctatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggag 599 ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| Sbjct: 80175 ttctatatctctaatcgaagaaattgacttcgtatgggcattttactggcagctatagag 80234 Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||||||||||||||||||||||| |||||||| | ||||||||||||||| Sbjct: 80235 atagctgctctagctacagtttcggatactccgctcatttcataaagtat 80284
>ref|XM_481018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 781 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 724 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 723 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 664 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 663 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 604 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 603 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 544 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 543 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 484 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 483 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 424 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 423 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 364 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 304 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 303 atattgtctttccagaaagaagaacc 278 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 180 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 179 gctactctagctacagtttcggatactccgcccatttcataaagtat 133
>ref|XM_481019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2157 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 1523 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 1466 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1465 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 1406 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 1405 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 1346 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 1345 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 1286 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1285 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 1226 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1225 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 1166 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 1165 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 1106 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1105 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 1046 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 1045 atattgtctttccagaaagaagaacc 1020 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 981 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 922 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 921 gctactctagctacagtttcggatactccgcccatttcataaagtat 875
>ref|XM_507181.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0036E18.24 mRNA Length = 2157 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 1523 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 1466 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1465 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 1406 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 1405 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 1346 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 1345 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 1286 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1285 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 1226 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1225 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 1166 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 1165 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 1106 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1105 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 1046 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 1045 atattgtctttccagaaagaagaacc 1020 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 981 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 922 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 921 gctactctagctacagtttcggatactccgcccatttcataaagtat 875
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 77202 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 77259 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 77260 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 77319 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 77320 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 77379 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 77380 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 77439 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 77440 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 77499 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 77500 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 77559 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 77560 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 77619 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77620 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 77679 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 77680 atattgtctttccagaaagaagaacc 77705 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 77743 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 77802 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 77803 gctgctctagctacagtttcggatactccgcccatttcataaagtat 77849
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 77202 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 77259 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 77260 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 77319 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 77320 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 77379 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 77380 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 77439 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 77440 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 77499 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 77500 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 77559 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 77560 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 77619 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77620 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 77679 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 77680 atattgtctttccagaaagaagaacc 77705 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 77743 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 77802 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 77803 gctgctctagctacagtttcggatactccgcccatttcataaagtat 77849
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 77143 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 77200 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 77201 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 77260 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 77261 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 77320 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 77321 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 77380 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 77381 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 77440 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 77441 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 77500 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 77501 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 77560 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77561 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 77620 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 77621 atattgtctttccagaaagaagaacc 77646 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 77687 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 77746 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 77747 gctactctagctacagtttcggatactccgcccatttcataaagtat 77793
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 53213 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 53270 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 53271 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 53330 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 53331 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 53390 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 53391 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 53450 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 53451 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 53510 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 53511 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 53570 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 53571 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 53630 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53631 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 53690 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 53691 atattgtctttccagaaagaagaacc 53716 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 53754 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 53813 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 53814 gctgctctagctacagtttcggatactccgcccatttcataaagtat 53860
>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07, complete sequence Length = 136858 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 126041 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 126098 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 126099 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 126158 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 126159 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 126218 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 126219 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 126278 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 126279 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 126338 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 126339 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 126398 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 126399 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 126458 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126459 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 126518 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 126519 atattgtctttccagaaagaagaacc 126544 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 126582 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 126641 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 126642 gctgctctagctacagtttcggatactccgcccatttcataaagtat 126688
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 77189 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 77246 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 77247 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 77306 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 77307 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 77366 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 77367 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 77426 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 77427 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 77486 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 77487 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 77546 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 77547 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 77606 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77607 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 77666 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 77667 atattgtctttccagaaagaagaacc 77692 Score = 133 bits (67), Expect = 8e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 77730 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 77789 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| ||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 77790 gctcgtctagctacagtttcggatactccgcccatttcataaagtat 77836
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 73591 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 73534 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 73533 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 73474 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 73473 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 73414 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 73413 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 73354 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 73353 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 73294 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 73293 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 73234 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 73233 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 73174 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73173 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 73114 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 73113 atattgtctttccagaaagaagaacc 73088 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 73009 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 72950 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 72949 gctactctagctacagtttcggatactccgcccatttcataaagtat 72903 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatggg 577 ||||| ||||| |||| |||||||||||||||||| Sbjct: 73049 tatatttctaaccgaagaaattgacttcgtatggg 73015
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 75390 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 75447 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 75448 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 75507 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 75508 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 75567 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 75568 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 75627 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 75628 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 75687 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 75688 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 75747 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 75748 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 75807 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75808 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 75867 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 75868 atattgtctttccagaaagaagaacc 75893 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 75932 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 75991 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 75992 gctactctagctacagtttcggatactccgcccatttcataaagtat 76038
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 9454 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 9511 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 9512 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 9571 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 9572 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 9631 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 9632 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 9691 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 9692 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 9751 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 9752 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 9811 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 9812 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 9871 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9872 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 9931 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 9932 atattgtctttccagaaagaagaacc 9957 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 9996 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 10055 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 10056 gctactctagctacagtttcggatactccgcccatttcataaagtat 10102
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 9192518 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 9192461 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 9192460 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 9192401 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 9192400 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 9192341 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 9192340 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 9192281 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 9192280 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 9192221 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 9192220 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 9192161 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 9192160 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 9192101 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9192100 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 9192041 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 9192040 atattgtctttccagaaagaagaacc 9192015 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 9115565 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 9115508 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 9115507 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 9115448 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 9115447 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 9115388 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 9115387 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 9115328 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 9115327 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 9115268 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 9115267 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 9115208 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 9115207 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 9115148 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9115147 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 9115088 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 9115087 atattgtctttccagaaagaagaacc 9115062 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 9191936 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 9191877 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 9191876 gctactctagctacagtttcggatactccgcccatttcataaagtat 9191830 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 9114983 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 9114924 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 9114923 gctactctagctacagtttcggatactccgcccatttcataaagtat 9114877 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 238 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 288 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 17722552 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 17722502 Score = 77.8 bits (39), Expect = 4e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 229 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 284 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 2072703 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 2072762 Query: 285 tggggcaatgcgtctttgattaca 308 | ||||| ||| |||||| ||||| Sbjct: 2072763 ttgggcactgcttctttggttaca 2072786 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatggg 577 ||||| ||||| |||| |||||||||||||||||| Sbjct: 9191976 tatatttctaaccgaagaaattgacttcgtatggg 9191942 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatggg 577 ||||| ||||| |||| |||||||||||||||||| Sbjct: 9115023 tatatttctaaccgaagaaattgacttcgtatggg 9114989
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 10368998 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 10369055 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 10369056 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 10369115 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 10369116 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 10369175 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 10369176 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 10369235 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 10369236 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 10369295 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 10369296 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 10369355 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 10369356 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 10369415 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369416 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 10369475 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 10369476 atattgtctttccagaaagaagaacc 10369501 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 221 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 276 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14021582 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14021523 Query: 277 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 336 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14021522 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14021463 Query: 337 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 381 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14021462 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14021421 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 10369540 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 10369599 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 10369600 gctactctagctacagtttcggatactccgcccatttcataaagtat 10369646
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 9259860 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 9259803 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 9259802 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 9259743 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 9259742 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 9259683 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 9259682 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 9259623 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 9259622 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 9259563 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 9259562 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 9259503 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 9259502 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 9259443 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9259442 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 9259383 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 9259382 atattgtctttccagaaagaagaacc 9259357 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 161 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 220 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 10791213 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 10791154 Query: 221 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 280 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 10791153 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 10791094 Query: 281 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 330 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10791093 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 10791044 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 124 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 17206218 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 17206277 Query: 125 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 184 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 17206278 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 17206336 Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaa 226 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 17206337 actgttgtcatagcgtattattataccgtcttcgcatttgaa 17206378 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 9259318 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 9259259 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 9259258 gctactctagctacagtttcggatactccgcccatttcataaagtat 9259212
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 12755754 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 12755811 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 12755812 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 12755871 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 12755872 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 12755931 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 12755932 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 12755991 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 12755992 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 12756051 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 12756052 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 12756111 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 12756112 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 12756171 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12756172 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 12756231 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 12756232 atattgtctttccagaaagaagaacc 12756257 Score = 759 bits (383), Expect = 0.0 Identities = 476/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 19545827 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 19545770 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct: 19545769 tttataatacttcaggagctaatgaaactagtttagtaaaattcaattctctcaattcct 19545710 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 || | |||| ||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 19545709 cgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 19545650 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 19545649 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 19545590 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct: 19545589 gtacaattacagctcgaattacttgagatctttctagaggcatttggggcactgcgtctt 19545530 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 19545529 tgattacagcaacaataacatcaccaatacgagcatattgctgattactagcagctccta 19545470 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 19545469 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 19545410 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19545409 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 19545350 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 19545349 atattgtctttccagaaagaagaacc 19545324 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 176 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 235 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 3036155 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 3036096 Query: 236 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 3036095 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 3036036 Query: 296 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 355 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 3036035 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 3035976 Query: 356 tcctatgactcgaatacacat 376 ||||||||||||||||||||| Sbjct: 3035975 tcctatgactcgaatacacat 3035955 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 81 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 140 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 3109053 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 3109111 Query: 141 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 200 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 3109112 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 3109170 Query: 201 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 260 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 3109171 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 3109229 Query: 261 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 320 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 3109230 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 3109289 Query: 321 tcaccaatacgagcatatcgctgattaccagcagctccta 360 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 3109290 tcatcaatatgagcatattgttgattactagcagcaccta 3109329 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 12756295 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 12756354 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 12756355 gctgctctagctacagtttcggatactccgcccatttcataaagtat 12756401 Score = 133 bits (67), Expect = 8e-28 Identities = 97/107 (90%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 19545285 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 19545226 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||||||||||||| |||||| ||||||| ||||||||||||||||| Sbjct: 19545225 gctgctctagctatagtttcggatactctgcccatttcataaagtat 19545179 Score = 107 bits (54), Expect = 5e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 403 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 462 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 3109364 ctacatttaaaagggtttgaggttgaatcatattattttgatgtcaatttgttatttcaa 3109423 Query: 463 tg 464 || Sbjct: 3109424 tg 3109425 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 444 tttcaatttgttatttcaatgcaaa 468 ||||||||||| ||||||||||||| Sbjct: 4108954 tttcaatttgtaatttcaatgcaaa 4108978
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 71073 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 71016 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 71015 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 70956 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 70955 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 70896 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 70895 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 70836 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 70835 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 70776 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 70775 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 70716 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 70715 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 70656 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70655 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 70596 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 70595 atattgtctttccagaaagaagaacc 70570 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 70531 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 70472 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 70471 gctactctagctacagtttcggatactccgcccatttcataaagtat 70425
>dbj|AK105308.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B12, full insert sequence Length = 2166 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 1531 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 1474 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1473 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 1414 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 1413 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 1354 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 1353 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 1294 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1293 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 1234 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1233 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 1174 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 1173 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 1114 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 1054 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 1053 atattgtctttccagaaagaagaacc 1028 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 990 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 931 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 930 gctgctctagctacagtttcggatactccgcccatttcataaagtat 884
>dbj|AK071967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084G06, full insert sequence Length = 1764 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 1746 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 1689 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1688 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 1629 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 1628 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 1569 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 1568 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 1509 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1508 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 1449 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1448 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 1389 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 1388 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 1329 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1328 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 1269 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 1268 atattgtctttccagaaagaagaacc 1243 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 1205 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 1146 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 1145 gctgctctagctacagtttcggatactccgcccatttcataaagtat 1099
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 807 bits (407), Expect = 0.0 Identities = 482/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 10375037 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 10375094 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 10375095 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 10375154 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 10375155 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 10375214 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 10375215 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 10375274 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 10375275 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 10375334 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 10375335 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 10375394 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 10375395 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 10375454 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375455 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 10375514 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 10375515 atattgtctttccagaaagaagaacc 10375540 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 221 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 276 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14029824 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14029765 Query: 277 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 336 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14029764 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14029705 Query: 337 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 381 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14029704 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14029663 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 10375579 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 10375638 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 10375639 gctactctagctacagtttcggatactccgcccatttcataaagtat 10375685
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 799 bits (403), Expect = 0.0 Identities = 481/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 5656652 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 5656709 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 5656710 tttataatacttcaggagctaatgaaactattgtagtaaaattcaattctctcaattcct 5656769 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 5656770 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 5656829 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 5656830 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 5656889 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 5656890 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 5656949 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 5656950 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 5657009 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 5657010 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 5657069 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657070 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 5657129 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 5657130 atattgtctttccagaaagaagaacc 5657155 Score = 387 bits (195), Expect = e-104 Identities = 255/274 (93%), Gaps = 2/274 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 20514164 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 20514221 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 20514222 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 20514281 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 20514282 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 20514341 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 20514342 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 20514401 Query: 241 gtacaattacagctcgaattacttcggatctttc 274 |||||||||||||||||||||||||||||||||| Sbjct: 20514402 gtacaattacagctcgaattacttcggatctttc 20514435 Score = 133 bits (67), Expect = 8e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 5657194 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 5657253 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||| |||||||| |||| |||||||| ||||||||||||||||| Sbjct: 5657254 gctgctatagctacaatttcggatactccgcccatttcataaagtat 5657300 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 88 ctattttggtaaaattcaattctctcaattc 118 ||||||| ||||||||||||||||||||||| Sbjct: 25823760 ctattttagtaaaattcaattctctcaattc 25823730
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 799 bits (403), Expect = 0.0 Identities = 481/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 33496968 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 33497025 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 33497026 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 33497085 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 33497086 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 33497145 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 33497146 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 33497205 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct: 33497206 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcatctt 33497265 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 33497266 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 33497325 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 33497326 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 33497385 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33497386 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 33497445 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 33497446 atattgtctttccagaaagaagaacc 33497471 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 150 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 209 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 30976459 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 30976400 Query: 210 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 269 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 30976399 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 30976340 Query: 270 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 329 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 30976339 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 30976280 Query: 330 cgagcatat 338 |||| |||| Sbjct: 30976279 cgagtatat 30976271 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 33497509 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 33497568 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 33497569 gctactctagctacagtttcggatactccgcccatttcataaagtat 33497615 Score = 69.9 bits (35), Expect = 1e-08 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 132 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 191 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 39109319 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 39109268 Query: 192 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 251 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 39109267 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 39109208 Query: 252 gctc 255 |||| Sbjct: 39109207 gctc 39109204 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 614 tacagtttcagatactccccccatttcataaagta 648 |||||||||||||||||| ||| |||||||||||| Sbjct: 15131590 tacagtttcagatactccgcccttttcataaagta 15131556 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 132 ccaaaaactcgagttccttttgggttgcctttttgat 168 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39108053 ccaaaaactcgagttccttttggatttccttcttgat 39108017 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 132 ccaaaaactcgagttccttttgggttgcctttttgat 168 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39103979 ccaaaaactcgagttccttttggatttccttcttgat 39103943 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 acaatctactaatattaatt 33 |||||||||||||||||||| Sbjct: 32571860 acaatctactaatattaatt 32571879
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 799 bits (403), Expect = 0.0 Identities = 481/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 42165 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 42222 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 42223 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 42282 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 42283 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 42342 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 42343 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 42402 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct: 42403 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcatctt 42462 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 42463 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 42522 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 42523 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 42582 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42583 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 42642 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 42643 atattgtctttccagaaagaagaacc 42668 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 42706 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 42765 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 42766 gctactctagctacagtttcggatactccgcccatttcataaagtat 42812
>dbj|AK063122.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E09, full insert sequence Length = 792 Score = 799 bits (403), Expect = 0.0 Identities = 481/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 780 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 723 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 722 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 663 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 662 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 603 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 602 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 543 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct: 542 gtacaattacagctcgaattacttcggatctttctagaggcatttggagcactgcgtctt 483 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 482 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 423 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 422 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 363 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 303 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 302 atattgtctttccagaaagaagaacc 277 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 180 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 179 gctgctctagctacagtttcggatactccgcccatttcataaagtat 133
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 799 bits (403), Expect = 0.0 Identities = 481/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 5656645 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 5656702 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 5656703 tttataatacttcaggagctaatgaaactattgtagtaaaattcaattctctcaattcct 5656762 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 5656763 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 5656822 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 5656823 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 5656882 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 5656883 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 5656942 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 5656943 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 5657002 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 5657003 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 5657062 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657063 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 5657122 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 5657123 atattgtctttccagaaagaagaacc 5657148 Score = 387 bits (195), Expect = e-104 Identities = 255/274 (93%), Gaps = 2/274 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 20440378 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 20440435 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 20440436 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 20440495 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 20440496 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 20440555 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 20440556 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 20440615 Query: 241 gtacaattacagctcgaattacttcggatctttc 274 |||||||||||||||||||||||||||||||||| Sbjct: 20440616 gtacaattacagctcgaattacttcggatctttc 20440649 Score = 133 bits (67), Expect = 8e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 5657187 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 5657246 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||| |||||||| |||| |||||||| ||||||||||||||||| Sbjct: 5657247 gctgctatagctacaatttcggatactccgcccatttcataaagtat 5657293 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 88 ctattttggtaaaattcaattctctcaattc 118 ||||||| ||||||||||||||||||||||| Sbjct: 25751936 ctattttagtaaaattcaattctctcaattc 25751906
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 799 bits (403), Expect = 0.0 Identities = 481/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 11175 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 11232 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 11233 tttataatacttcaggagctaatgaaactattgtagtaaaattcaattctctcaattcct 11292 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 11293 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 11352 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 11353 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 11412 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 11413 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 11472 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 11473 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 11532 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 11533 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 11592 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11593 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 11652 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 11653 atattgtctttccagaaagaagaacc 11678 Score = 133 bits (67), Expect = 8e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 11717 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 11776 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||| |||||||| |||| |||||||| ||||||||||||||||| Sbjct: 11777 gctgctatagctacaatttcggatactccgcccatttcataaagtat 11823
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 799 bits (403), Expect = 0.0 Identities = 481/506 (95%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 77145 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 77202 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 77203 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 77262 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 77263 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 77322 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 77323 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 77382 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 77383 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 77442 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 77443 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 77502 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| Sbjct: 77503 tgactcgaatacacatcaattttcgagctccgctgttatctgctacatttaaaagggtct 77562 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77563 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 77622 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 77623 atattgtctttccagaaagaagaacc 77648 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 77687 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 77746 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 77747 gctactctagctacagtttcggatactccgcccatttcataaagtat 77793
>ref|XM_479424.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 791 bits (399), Expect = 0.0 Identities = 480/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 1521 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 1464 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1463 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 1404 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 1403 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 1344 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 1343 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 1284 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1283 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 1224 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1223 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 1164 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| Sbjct: 1163 tgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaagggtct 1104 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1103 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 1044 Query: 481 atattgtctttccagaaagaaaaacc 506 |||| |||||||||||||||| |||| Sbjct: 1043 atatcgtctttccagaaagaagaacc 1018 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| || | |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 980 tatatttctaaccggagaaattgacttcgtatgggcattttgctggcagctatggaaata 921 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 920 gctgctctagctacagtttcggatactccgcccatttcataaagtat 874
>ref|XM_479423.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 791 bits (399), Expect = 0.0 Identities = 480/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 1521 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 1464 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1463 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 1404 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 1403 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 1344 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 1343 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 1284 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1283 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 1224 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1223 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 1164 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| Sbjct: 1163 tgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaagggtct 1104 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1103 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 1044 Query: 481 atattgtctttccagaaagaaaaacc 506 |||| |||||||||||||||| |||| Sbjct: 1043 atatcgtctttccagaaagaagaacc 1018 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| || | |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 980 tatatttctaaccggagaaattgacttcgtatgggcattttgctggcagctatggaaata 921 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 920 gctgctctagctacagtttcggatactccgcccatttcataaagtat 874
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 791 bits (399), Expect = 0.0 Identities = 480/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 27922685 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 27922742 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 27922743 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 27922802 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 27922803 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 27922862 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 27922863 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 27922922 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 27922923 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 27922982 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 27922983 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 27923042 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| Sbjct: 27923043 tgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaagggtct 27923102 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27923103 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 27923162 Query: 481 atattgtctttccagaaagaaaaacc 506 |||| |||||||||||||||| |||| Sbjct: 27923163 atatcgtctttccagaaagaagaacc 27923188 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| || | |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 27923226 tatatttctaaccggagaaattgacttcgtatgggcattttgctggcagctatggaaata 27923285 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 27923286 gctgctctagctacagtttcggatactccgcccatttcataaagtat 27923332 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 84 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 143 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 4509148 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 4509089 Query: 144 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 203 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 4509088 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 4509030 Query: 204 attataccgtcttcgcatttgaa 226 ||||||||||||||||||||||| Sbjct: 4509029 attataccgtcttcgcatttgaa 4509007
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 791 bits (399), Expect = 0.0 Identities = 480/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 23181900 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 23181843 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 23181842 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 23181783 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||| ||||||||| ||||||||||||| || |||||||||||||| ||||||| Sbjct: 23181782 cggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaatgataaccg 23181723 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 23181722 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 23181663 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 23181662 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 23181603 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 23181602 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 23181543 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 23181542 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 23181483 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23181482 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 23181423 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 23181422 atattgtctttccagaaagaagaacc 23181397 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 23181359 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 23181300 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 23181299 gctgctctagctacagtttcggatactccgcccatttcataaagtat 23181253
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 791 bits (399), Expect = 0.0 Identities = 480/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 86043 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 86100 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 86101 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 86160 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 86161 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 86220 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 86221 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 86280 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 86281 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 86340 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 86341 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 86400 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| Sbjct: 86401 tgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaagggtct 86460 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86461 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 86520 Query: 481 atattgtctttccagaaagaaaaacc 506 |||| |||||||||||||||| |||| Sbjct: 86521 atatcgtctttccagaaagaagaacc 86546 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| || | |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 86584 tatatttctaaccggagaaattgacttcgtatgggcattttgctggcagctatggaaata 86643 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 86644 gctgctctagctacagtttcggatactccgcccatttcataaagtat 86690
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 791 bits (399), Expect = 0.0 Identities = 480/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 12019 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 12076 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 12077 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 12136 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 12137 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 12196 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 12197 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 12256 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 12257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 12316 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 12317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 12376 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| Sbjct: 12377 tgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaagggtct 12436 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12437 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 12496 Query: 481 atattgtctttccagaaagaaaaacc 506 |||| |||||||||||||||| |||| Sbjct: 12497 atatcgtctttccagaaagaagaacc 12522 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| || | |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 12560 tatatttctaaccggagaaattgacttcgtatgggcattttgctggcagctatggaaata 12619 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 12620 gctgctctagctacagtttcggatactccgcccatttcataaagtat 12666
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 791 bits (399), Expect = 0.0 Identities = 480/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 132548 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 132491 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 132490 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 132431 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||| ||||||||| ||||||||||||| || |||||||||||||| ||||||| Sbjct: 132430 cggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaatgataaccg 132371 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 132370 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 132311 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 132310 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 132251 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 132250 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 132191 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 132190 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 132131 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132130 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 132071 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 132070 atattgtctttccagaaagaagaacc 132045 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 132007 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 131948 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 131947 gctgctctagctacagtttcggatactccgcccatttcataaagtat 131901
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 791 bits (399), Expect = 0.0 Identities = 480/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 16662 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 16605 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 16604 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 16545 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||| ||||||||| ||||||||||||| || |||||||||||||| ||||||| Sbjct: 16544 cggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaatgataaccg 16485 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 16484 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 16425 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 16424 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 16365 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 16364 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 16305 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 16304 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 16245 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16244 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 16185 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 16184 atattgtctttccagaaagaagaacc 16159 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 16121 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 16062 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 16061 gctgctctagctacagtttcggatactccgcccatttcataaagtat 16015
>ref|XM_450630.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 767 bits (387), Expect = 0.0 Identities = 477/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 781 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 724 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 723 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 664 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 663 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 604 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 603 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 544 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 543 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactacgtctt 484 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 483 tgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcagctccta 424 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||| Sbjct: 423 tgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaagggtct 364 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 363 gaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatgaaagaa 304 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 303 atattgtctttccagaaagaagaacc 278 Score = 133 bits (67), Expect = 8e-28 Identities = 97/107 (90%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| || || |||||||| ||| Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatgggcattttgctagcagctatggaaata 180 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||| ||||||||| Sbjct: 179 gctgctctagctacagtttcggatactccgcccattttataaagtat 133
>ref|XM_450631.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2141 Score = 767 bits (387), Expect = 0.0 Identities = 477/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 1509 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 1452 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1451 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 1392 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 1391 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 1332 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 1331 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 1272 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 1271 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactacgtctt 1212 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 1211 tgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcagctccta 1152 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||| Sbjct: 1151 tgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaagggtct 1092 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1091 gaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatgaaagaa 1032 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 1031 atattgtctttccagaaagaagaacc 1006 Score = 133 bits (67), Expect = 8e-28 Identities = 97/107 (90%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| || || |||||||| ||| Sbjct: 967 tatatttctaaccgaagaaattgacttcgtatgggcattttgctagcagctatggaaata 908 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||| ||||||||| Sbjct: 907 gctgctctagctacagtttcggatactccgcccattttataaagtat 861
>ref|XM_506652.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1001_G09.24 mRNA Length = 1742 Score = 767 bits (387), Expect = 0.0 Identities = 477/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 1724 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 1667 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1666 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 1607 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 1606 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 1547 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 1546 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 1487 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 1486 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactacgtctt 1427 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 1426 tgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcagctccta 1367 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||| Sbjct: 1366 tgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaagggtct 1307 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1306 gaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatgaaagaa 1247 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 1246 atattgtctttccagaaagaagaacc 1221 Score = 133 bits (67), Expect = 8e-28 Identities = 97/107 (90%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| || || |||||||| ||| Sbjct: 1182 tatatttctaaccgaagaaattgacttcgtatgggcattttgctagcagctatggaaata 1123 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||| ||||||||| Sbjct: 1122 gctgctctagctacagtttcggatactccgcccattttataaagtat 1076
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 767 bits (387), Expect = 0.0 Identities = 477/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 11896681 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 11896624 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 11896623 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 11896564 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 11896563 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 11896504 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 11896503 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 11896444 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 11896443 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactacgtctt 11896384 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 11896383 tgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcagctccta 11896324 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||| Sbjct: 11896323 tgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaagggtct 11896264 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 11896263 gaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatgaaagaa 11896204 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 11896203 atattgtctttccagaaagaagaacc 11896178 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 124 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 20862633 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 20862692 Query: 125 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 184 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 20862693 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 20862751 Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaa 226 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 20862752 attgttgtcatagcgtattattataccgtcttcgcatttgaa 20862793 Score = 153 bits (77), Expect = 9e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 426 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14456068 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 14456009 Query: 486 gtctttccagaaagaaaaacc 506 |||||||||||||||| |||| Sbjct: 14456008 gtctttccagaaagaagaacc 14455988 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 14455950 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 14455891 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 14455890 gctgctctagctacagtttcggatactccgcccatttcataaagtat 14455844 Score = 133 bits (67), Expect = 8e-28 Identities = 97/107 (90%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| || || |||||||| ||| Sbjct: 11896139 tatatttctaaccgaagaaattgacttcgtatgggcattttgctagcagctatggaaata 11896080 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||| ||||||||| Sbjct: 11896079 gctgctctagctacagtttcggatactccgcccattttataaagtat 11896033
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 767 bits (387), Expect = 0.0 Identities = 477/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 78171 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 78114 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 78113 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 78054 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 78053 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 77994 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 77993 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 77934 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 77933 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactacgtctt 77874 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 77873 tgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcagctccta 77814 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||| Sbjct: 77813 tgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaagggtct 77754 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 77753 gaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatgaaagaa 77694 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 77693 atattgtctttccagaaagaagaacc 77668 Score = 133 bits (67), Expect = 8e-28 Identities = 97/107 (90%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| || || |||||||| ||| Sbjct: 77629 tatatttctaaccgaagaaattgacttcgtatgggcattttgctagcagctatggaaata 77570 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||| ||||||||| Sbjct: 77569 gctgctctagctacagtttcggatactccgcccattttataaagtat 77523
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 767 bits (387), Expect = 0.0 Identities = 477/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 1161 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 1104 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1103 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 1044 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 1043 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 984 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 983 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 924 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 923 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactacgtctt 864 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 863 tgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcagctccta 804 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||| Sbjct: 803 tgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaagggtct 744 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 743 gaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatgaaagaa 684 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 683 atattgtctttccagaaagaagaacc 658 Score = 133 bits (67), Expect = 8e-28 Identities = 97/107 (90%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| || || |||||||| ||| Sbjct: 619 tatatttctaaccgaagaaattgacttcgtatgggcattttgctagcagctatggaaata 560 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||| ||||||||| Sbjct: 559 gctgctctagctacagtttcggatactccgcccattttataaagtat 513
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 759 bits (383), Expect = 0.0 Identities = 476/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 146539 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 146482 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct: 146481 tttataatacttcaggagctaatgaaactagtttagtaaaattcaattctctcaattcct 146422 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 || | |||| ||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 146421 cgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 146362 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 146361 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 146302 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct: 146301 gtacaattacagctcgaattacttgagatctttctagaggcatttggggcactgcgtctt 146242 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 146241 tgattacagcaacaataacatcaccaatacgagcatattgctgattactagcagctccta 146182 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 146181 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 146122 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146121 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 146062 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 146061 atattgtctttccagaaagaagaacc 146036 Score = 133 bits (67), Expect = 8e-28 Identities = 97/107 (90%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 145997 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 145938 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||||||||||||| |||||| ||||||| ||||||||||||||||| Sbjct: 145937 gctgctctagctatagtttcggatactctgcccatttcataaagtat 145891
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11, complete sequence Length = 102567 Score = 759 bits (383), Expect = 0.0 Identities = 476/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 5726 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 5669 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct: 5668 tttataatacttcaggagctaatgaaactagtttagtaaaattcaattctctcaattcct 5609 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 || | |||| ||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 5608 cgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 5549 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 5548 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 5489 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct: 5488 gtacaattacagctcgaattacttgagatctttctagaggcatttggggcactgcgtctt 5429 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 5428 tgattacagcaacaataacatcaccaatacgagcatattgctgattactagcagctccta 5369 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 5368 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 5309 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5308 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 5249 Query: 481 atattgtctttccagaaagaaaaacc 506 ||||||||||||||||||||| |||| Sbjct: 5248 atattgtctttccagaaagaagaacc 5223 Score = 133 bits (67), Expect = 8e-28 Identities = 97/107 (90%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 5184 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 5125 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||||||||||||| |||||| ||||||| ||||||||||||||||| Sbjct: 5124 gctgctctagctatagtttcggatactctgcccatttcataaagtat 5078
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 759 bits (383), Expect = 0.0 Identities = 476/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| | ||| ||||||||||| || |||||||||||| || ||| ||||||||| Sbjct: 78979 atatacgtgagacaaaatctactaatttt--ttctttgatctatatctcgtctactagta 79036 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| | Sbjct: 79037 tttataatacttcaggagctaatgaaactattttagtcaaattcaattctcttaattctt 79096 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| | Sbjct: 79097 cggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataactg 79156 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | ||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||| Sbjct: 79157 ctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgtac 79216 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 79217 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 79276 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 79277 tgattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctccta 79336 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 79337 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 79396 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct: 79397 gaggttgaatcatattatttggatttccatttgttatttcaatgcaaaaggatgaaagaa 79456 Query: 481 atattgtctttccagaaagaaaaacc 506 |||||||||||||||||||||||||| Sbjct: 79457 atattgtctttccagaaagaaaaacc 79482 Score = 178 bits (90), Expect = 2e-41 Identities = 111/118 (94%) Strand = Plus / Plus Query: 532 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactggccg 591 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct: 79509 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactggcag 79568 Query: 592 ctatggagatagctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||| Sbjct: 79569 ctatagagatagctgctctagctacagtttcggatactccgctcatttcataaagtat 79626
>emb|X06734.1|CHZMRP14 Maize chloroplast genes for ribosomal proteins L14, S8 and L16 partial Length = 1287 Score = 759 bits (383), Expect = 0.0 Identities = 476/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| | ||| ||||||||||| || |||||||||||| || ||| ||||||||| Sbjct: 690 atatacgtgagacaaaatctactaatttt--ttctttgatctatatctcgtctactagta 633 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| | Sbjct: 632 tttataatacttcaggagctaatgaaactattttagtcaaattcaattctcttaattctt 573 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| | Sbjct: 572 cggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataactg 513 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | ||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||| Sbjct: 512 ctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgtac 453 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 452 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 393 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 392 tgattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctccta 333 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 332 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 273 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct: 272 gaggttgaatcatattatttggatttccatttgttatttcaatgcaaaaggatgaaagaa 213 Query: 481 atattgtctttccagaaagaaaaacc 506 |||||||||||||||||||||||||| Sbjct: 212 atattgtctttccagaaagaaaaacc 187 Score = 178 bits (90), Expect = 2e-41 Identities = 111/118 (94%) Strand = Plus / Minus Query: 532 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactggccg 591 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct: 160 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactggcag 101 Query: 592 ctatggagatagctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||| Sbjct: 100 ctatagagatagctgctctagctacagtttcggatactccgctcatttcataaagtat 43
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 759 bits (383), Expect = 0.0 Identities = 476/506 (94%), Gaps = 2/506 (0%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| | ||| ||||||||||| || |||||||||||| || ||| ||||||||| Sbjct: 78995 atatacgtgagacaaaatctactaatttt--ttctttgatctatatctcgtctactagta 79052 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| | Sbjct: 79053 tttataatacttcaggagctaatgaaactattttagtcaaattcaattctcttaattctt 79112 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| | Sbjct: 79113 cggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataactg 79172 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | ||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||| Sbjct: 79173 ctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgtac 79232 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 79233 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtctt 79292 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 79293 tgattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctccta 79352 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 79353 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 79412 Query: 421 gaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaa 480 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct: 79413 gaggttgaatcatattatttggatttccatttgttatttcaatgcaaaaggatgaaagaa 79472 Query: 481 atattgtctttccagaaagaaaaacc 506 |||||||||||||||||||||||||| Sbjct: 79473 atattgtctttccagaaagaaaaacc 79498 Score = 178 bits (90), Expect = 2e-41 Identities = 111/118 (94%) Strand = Plus / Plus Query: 532 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactggccg 591 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct: 79525 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactggcag 79584 Query: 592 ctatggagatagctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||| Sbjct: 79585 ctatagagatagctgctctagctacagtttcggatactccgctcatttcataaagtat 79642
>ref|NM_190859.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 372 Score = 618 bits (312), Expect = e-174 Identities = 357/372 (95%) Strand = Plus / Minus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 372 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 313 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 181 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 312 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 253 Query: 182 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 241 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 252 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 193 Query: 242 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 301 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 192 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcatcttt 133 Query: 302 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 361 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 132 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 73 Query: 362 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 421 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 72 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 13 Query: 422 aggttgaatcat 433 |||||||||||| Sbjct: 12 aggttgaatcat 1
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 195 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 254 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 14317 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 14376 Query: 255 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 314 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 14377 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 14436 Query: 315 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 374 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 14437 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 14496 Query: 375 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 434 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 14497 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 14556 Query: 435 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 494 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 14557 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 14616 Query: 495 gaaa 498 |||| Sbjct: 14617 gaaa 14620 Score = 224 bits (113), Expect = 3e-55 Identities = 177/196 (90%), Gaps = 3/196 (1%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 13946 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 14003 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 14004 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 14063 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| |||||||||||||| |||||||||||||| || ||||||| |||||| ||||||| Sbjct: 14064 aggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatgataaccg 14122 Query: 181 cagcattgtcatcata 196 | |||||||| ||||| Sbjct: 14123 ctgcattgtcgtcata 14138 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| ||||||||||| |||||||||||| ||||| |||||||| ||| Sbjct: 14667 tatatttctaaccgaagaaattgacttcatatgggcattttgctggcagctatggaaata 14726 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 14727 gctgctctagctacagtttcggatactccgcccatttcataaagtat 14773
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 195 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 254 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24638131 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24638190 Query: 255 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 314 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24638191 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24638250 Query: 315 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 374 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24638251 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24638310 Query: 375 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 434 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 24638311 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 24638370 Query: 435 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 494 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24638371 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 24638430 Query: 495 gaaa 498 |||| Sbjct: 24638431 gaaa 24638434 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 244 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32000439 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32000498 Query: 245 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 304 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32000499 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32000558 Query: 305 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 364 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32000559 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32000618 Query: 365 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 424 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 32000619 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 32000678 Query: 425 ttgaatcatattattttgatttcaatttgttatttcaatgc 465 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 32000679 ttgaatcatattattttgattttaatttgttatttcaatgc 32000719 Score = 224 bits (113), Expect = 3e-55 Identities = 177/196 (90%), Gaps = 3/196 (1%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 24637760 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 24637817 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 24637818 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 24637877 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| |||||||||||||| |||||||||||||| || ||||||| |||||| ||||||| Sbjct: 24637878 aggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatgataaccg 24637936 Query: 181 cagcattgtcatcata 196 | |||||||| ||||| Sbjct: 24637937 ctgcattgtcgtcata 24637952 Score = 163 bits (82), Expect = 9e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 124 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 27557409 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 27557468 Query: 125 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 184 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 27557469 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 27557527 Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaa 226 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27557528 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 27557569 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| ||||||||||| |||||||||||| ||||| |||||||| ||| Sbjct: 24638481 tatatttctaaccgaagaaattgacttcatatgggcattttgctggcagctatggaaata 24638540 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 24638541 gctgctctagctacagtttcggatactccgcccatttcataaagtat 24638587
>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136470 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 195 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 254 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 70177 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 70236 Query: 255 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 314 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 70237 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 70296 Query: 315 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 374 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 70297 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 70356 Query: 375 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 434 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 70357 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 70416 Query: 435 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 494 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 70417 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 70476 Query: 495 gaaa 498 |||| Sbjct: 70477 gaaa 70480 Score = 224 bits (113), Expect = 3e-55 Identities = 177/196 (90%), Gaps = 3/196 (1%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 69806 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 69863 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 69864 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 69923 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| |||||||||||||| |||||||||||||| || ||||||| |||||| ||||||| Sbjct: 69924 aggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatgataaccg 69982 Query: 181 cagcattgtcatcata 196 | |||||||| ||||| Sbjct: 69983 ctgcattgtcgtcata 69998 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| ||||||||||| |||||||||||| ||||| |||||||| ||| Sbjct: 70527 tatatttctaaccgaagaaattgacttcatatgggcattttgctggcagctatggaaata 70586 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 70587 gctgctctagctacagtttcggatactccgcccatttcataaagtat 70633
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 195 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 254 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24555600 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24555659 Query: 255 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 314 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24555660 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24555719 Query: 315 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 374 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24555720 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24555779 Query: 375 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 434 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 24555780 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 24555839 Query: 435 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 494 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24555840 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 24555899 Query: 495 gaaa 498 |||| Sbjct: 24555900 gaaa 24555903 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 244 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32090951 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32091010 Query: 245 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 304 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32091011 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32091070 Query: 305 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 364 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32091071 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32091130 Query: 365 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 424 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 32091131 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 32091190 Query: 425 ttgaatcatattattttgatttcaatttgttatttcaatgc 465 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 32091191 ttgaatcatattattttgattttaatttgttatttcaatgc 32091231 Score = 224 bits (113), Expect = 3e-55 Identities = 177/196 (90%), Gaps = 3/196 (1%) Strand = Plus / Plus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 24555229 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 24555286 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 24555287 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 24555346 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| |||||||||||||| |||||||||||||| || ||||||| |||||| ||||||| Sbjct: 24555347 aggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatgataaccg 24555405 Query: 181 cagcattgtcatcata 196 | |||||||| ||||| Sbjct: 24555406 ctgcattgtcgtcata 24555421 Score = 163 bits (82), Expect = 9e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 124 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 27648732 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 27648791 Query: 125 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 184 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 27648792 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 27648850 Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaa 226 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27648851 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 27648892 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| ||||||||||| |||||||||||| ||||| |||||||| ||| Sbjct: 24555950 tatatttctaaccgaagaaattgacttcatatgggcattttgctggcagctatggaaata 24556009 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 24556010 gctgctctagctacagtttcggatactccgcccatttcataaagtat 24556056
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence Length = 144306 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 244 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92391 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 92450 Query: 245 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 304 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 92451 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 92510 Query: 305 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 364 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 92511 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 92570 Query: 365 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 424 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 92571 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 92630 Query: 425 ttgaatcatattattttgatttcaatttgttatttcaatgc 465 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 92631 ttgaatcatattattttgattttaatttgttatttcaatgc 92671
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 244 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 1623 Query: 245 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 304 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 1624 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 1683 Query: 305 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 364 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1684 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 1743 Query: 365 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 424 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 1744 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 1803 Query: 425 ttgaatcatattattttgatttcaatttgttatttcaatgc 465 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 1804 ttgaatcatattattttgattttaatttgttatttcaatgc 1844
>gb|DQ069425.1| Typha latifolia ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 402 bits (203), Expect = e-109 Identities = 325/365 (89%), Gaps = 3/365 (0%) Strand = Plus / Minus Query: 69 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatc 128 |||||||||||||||||||||||||| ||||||||||| | |||||||||| || ||| Sbjct: 362 acttcaggagctaatgaaactattttagtaaaattcaactgtctcaattcccgagcgatc 303 Query: 129 gcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattg 188 || ||||||||||||||||||||||| || |||| ||||||||| | ||| ||||||||| Sbjct: 302 gcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgcagcattg 243 Query: 189 tcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaatt 248 |||||||| || ||||| ||||||| ||| | ||||| |||||||||||||||||||||| Sbjct: 242 tcatcatatcgtattatgataccgttttcacgtttgagttctttacatgtacgtacaatt 183 Query: 249 acagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattaca 308 ||||||| ||||||||| ||||||||||||||||| | ||| | ||| |||||||||||| Sbjct: 182 acagctctaattacttctgatctttctagaggcatattgggaactgcttctttgattaca 123 Query: 309 gcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcga 368 ||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |||| Sbjct: 122 gcaacaataacatcaccaatatgagcatatcggtgattac---cagctcctatgattcga 66 Query: 369 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 428 |||||||| |||||||||||||| || || || |||||||| |||||||||||||||||| Sbjct: 65 atacacattaattttcgagctccgctgttatccgctacattcaaaagggtctgaggttga 6 Query: 429 atcat 433 ||||| Sbjct: 5 atcat 1
>gb|DQ069426.1| Yucca schidigera ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 387 bits (195), Expect = e-104 Identities = 326/369 (88%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 124 |||||| || |||||||||||||||||||| ||||||||||| | |||||||||| || Sbjct: 366 taatacctcgggagctaatgaaactattttagtaaaattcaactgtctcaattcccgagc 307 Query: 125 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 184 |||||| ||||||| |||||||||||||||||| |||| ||||||||| | |||||| || Sbjct: 306 aatcgccccaaaaattcgagttccttttgggtttccttcttgatcaatgacaaccgctgc 247 Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 244 |||||||||||| || ||||| ||||||| || | ||||| |||||||||||||||||| Sbjct: 246 attgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtac 187 Query: 245 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 304 ||||||||||| ||||||||| ||||||||||||||||| | ||||| ||| |||||||| Sbjct: 186 aattacagctctaattacttctgatctttctagaggcatattgggcactgcttctttgat 127 Query: 305 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 364 ||||||||||||||| ||||||||| |||||||||| ||||||| |||| ||||||| Sbjct: 126 tacagcaacaataacgtcaccaatatgagcatatcggtgattac---cagcccctatgat 70 Query: 365 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 424 ||||||||||||||||| ||||||||| || || ||||||||||| |||||||| ||||| Sbjct: 69 tcgaatacacatcaattctcgagctccgctgttatctgctacattcaaaagggtttgagg 10 Query: 425 ttgaatcat 433 ||||||||| Sbjct: 9 ttgaatcat 1
>emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143618 Score = 387 bits (195), Expect = e-104 Identities = 255/274 (93%), Gaps = 2/274 (0%) Strand = Plus / Minus Query: 1 atatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagta 60 |||||||| ||||||||||||||||| || || ||||||||| || | | ||||||||| Sbjct: 79069 atatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagta 79012 Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 79011 tttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcct 78952 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 78951 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 78892 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 78891 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 78832 Query: 241 gtacaattacagctcgaattacttcggatctttc 274 |||||||||||||||||||||||||||||||||| Sbjct: 78831 gtacaattacagctcgaattacttcggatctttc 78798
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 176 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 235 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 23399 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 23340 Query: 236 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 23339 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 23280 Query: 296 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 355 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 23279 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 23220 Query: 356 tcctatgactcgaatacacat 376 ||||||||||||||||||||| Sbjct: 23219 tcctatgactcgaatacacat 23199 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 81 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 140 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 96297 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 96355 Query: 141 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 200 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 96356 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 96414 Query: 201 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 260 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 96415 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 96473 Query: 261 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 320 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 96474 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 96533 Query: 321 tcaccaatacgagcatatcgctgattaccagcagctccta 360 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 96534 tcatcaatatgagcatattgttgattactagcagcaccta 96573 Score = 107 bits (54), Expect = 5e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 403 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 462 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 96608 ctacatttaaaagggtttgaggttgaatcatattattttgatgtcaatttgttatttcaa 96667 Query: 463 tg 464 || Sbjct: 96668 tg 96669
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 176 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 235 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 130171 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 130112 Query: 236 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 130111 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 130052 Query: 296 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 355 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 130051 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 129992 Query: 356 tcctatgactcgaatacacat 376 ||||||||||||||||||||| Sbjct: 129991 tcctatgactcgaatacacat 129971
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 349 bits (176), Expect = 7e-93 Identities = 337/390 (86%), Gaps = 3/390 (0%) Strand = Plus / Plus Query: 52 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 111 |||||||||||||||| |||||||| |||||||| |||||||| || ||||| || | || Sbjct: 81909 ctactagtatttataagacttcaggggctaatgagactattttagtgaaatttaactttc 81968 Query: 112 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 171 |||||||| |||||||| ||||||||||||||||||||||| || |||| |||||||| Sbjct: 81969 tcaattcccgagcaatcgctccaaaaactcgagttccttttggatttccttcttgatcaa 82028 Query: 172 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 231 | | ||| || |||||||||||||| || ||||| ||||||| |||| ||||| ||||| Sbjct: 82029 tgacaactgccgcattgtcatcatatcgtattatcataccgttgtcgcgtttgagttctt 82088 Query: 232 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 291 |||||||||||||||||||||||||||| ||||| |||||||| |||||||| | ||||| Sbjct: 82089 tacatgtacgtacaattacagctcgaataacttctgatctttcgagaggcatattgggca 82148 Query: 292 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 351 ||| ||||||||||||||||||||||| ||||| ||| |||||||||| |||||| Sbjct: 82149 ctgcttctttgattacagcaacaataacgtcaccgatatgagcatatcggcgattac--- 82205 Query: 352 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 411 ||| ||||||| |||||| |||||||||| |||||| || || ||||| |||||||| | Sbjct: 82206 tagcccctatgattcgaatgcacatcaattctcgagccccgctgttgtccgctacattca 82265 Query: 412 aaagggtctgaggttgaatcatattatttt 441 || ||||||||||||||||||||| ||||| Sbjct: 82266 aatgggtctgaggttgaatcatatcatttt 82295 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 561 aattgacttcgtatgggcattttactggccgctatggagatagctgctctagctacagtt 620 |||||| ||||||| |||||||| | || ||||| || ||||| ||||| ||||||||| Sbjct: 82437 aattgagttcgtataggcattttgcacgcagctattgaaatagccgctctggctacagtt 82496 Query: 621 tcagatactccccccatttcataaagtat 649 || |||||||| ||||||||||||||||| Sbjct: 82497 tcggatactccgcccatttcataaagtat 82525
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 323 bits (163), Expect = 4e-85 Identities = 344/401 (85%), Gaps = 5/401 (1%) Strand = Plus / Plus Query: 63 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 122 ||||| ||||| || ||||||||||| ||||| ||||||||||| | || |||||| ||| Sbjct: 82583 tataagacttcgggtgctaatgaaacgattttagtaaaattcaactgtcgcaattc-tcg 82641 Query: 123 -gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 181 ||||| || ||||||| ||||||||||||||| || |||| ||||||||| |||||||| Sbjct: 82642 agcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataaccgc 82701 Query: 182 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 241 |||||||||||||| || ||||| || |||| || | ||||| |||||||||||| || Sbjct: 82702 tgcattgtcatcatatcgtattatcatgccgttgtcacgtttgagttctttacatgtgcg 82761 Query: 242 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 301 |||||| ||||||| ||||| ||| ||||||||||||||||| | ||||| ||| ||||| Sbjct: 82762 tacaatcacagctctaattatttctgatctttctagaggcatgttgggcactgcttcttt 82821 Query: 302 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 361 ||||||||||||||||||||| |||| | |||||||||| ||||||| ||| |||||| Sbjct: 82822 gattacagcaacaataacatcgccaagatgagcatatcggtgattac---cagttcctat 82878 Query: 362 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 421 || |||||||||||| |||||| |||||||||| || || |||||||| ||||||||||| Sbjct: 82879 gattcgaatacacattaatttttgagctccactgttatccgctacattcaaaagggtctg 82938 Query: 422 aggttgaatcatattattttgatttcaatttgttatttcaa 462 |||||||||||||| ||||| | || ||| | ||||||||| Sbjct: 82939 aggttgaatcatatcatttttaatttaatctcttatttcaa 82979 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 612 gctacagtttcagatactccccccatttcataaa 645 ||||||| |||||||||||| | ||||||||||| Sbjct: 83144 gctacagcttcagatactccactcatttcataaa 83177
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 319 bits (161), Expect = 6e-84 Identities = 328/383 (85%), Gaps = 3/383 (0%) Strand = Plus / Plus Query: 59 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 118 |||||||||||| |||||||||| ||||||||||| || |||||||| | ||||||||| Sbjct: 80435 tatttataatacctcaggagctagggaaactattttagtgaaattcaaatgtctcaattc 80494 Query: 119 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 178 | || ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| Sbjct: 80495 ccgagcgatcgcaccaaaaactcgagttccttttggattcccttcttgatcaatgacaac 80554 Query: 179 cgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 238 || |||||||||||||| || ||||| ||||||| || | ||||| |||||||||||| Sbjct: 80555 tgctgcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgt 80614 Query: 239 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 298 ||||||||||||||||| | ||||| ||||||||||||| ||| | ||| | ||| || Sbjct: 80615 acgtacaattacagctctgaccacttctgatctttctagagacatattgggtactgcttc 80674 Query: 299 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 358 ||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||| Sbjct: 80675 tttgattacagcaacaataacgtcaccaatatgagcatatcggcgattac---tggctcc 80731 Query: 359 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 418 ||||| ||||||||||||||||| |||||| || || || || ||||||||||||||||| Sbjct: 80732 tatgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaaagggt 80791 Query: 419 ctgaggttgaatcatattatttt 441 ||||||||||||||||| ||||| Sbjct: 80792 ctgaggttgaatcatatcatttt 80814 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| Sbjct: 81003 atagcggctctggctacagtttctgatactccacccatctcataaagtat 81052
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 307 bits (155), Expect = 2e-80 Identities = 319/373 (85%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82356 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82415 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82416 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82475 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82476 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82535 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82536 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82595 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82596 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82652 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82653 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82712 Query: 421 gaggttgaatcat 433 ||||||||||||| Sbjct: 82713 gaggttgaatcat 82725 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 82928 tactccacccatttcataaagtat 82951
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 305 bits (154), Expect = 1e-79 Identities = 184/194 (94%) Strand = Plus / Minus Query: 313 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 372 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 24916826 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 24916767 Query: 373 acatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatca 432 |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct: 24916766 acattaattttcgagctccactattatctgctacatttaaaagggtctgaggttaaatta 24916707 Query: 433 tattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttc 492 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 24916706 tattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtctttc 24916647 Query: 493 cagaaagaaaaacc 506 ||||||||| |||| Sbjct: 24916646 cagaaagaagaacc 24916633 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 24916596 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 24916537 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 24916536 gctgctctagctacagtttcggatactccgcccatttcataaagtat 24916490 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 116 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 175 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 20875041 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 20875100 Query: 176 aaccgcagcattgtcatc 193 ||||| ||||||||||| Sbjct: 20875101 aaccgttgcattgtcatc 20875118 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 97 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 139 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 32000475 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 32000433
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 305 bits (154), Expect = 1e-79 Identities = 184/194 (94%) Strand = Plus / Minus Query: 313 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 372 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 78109 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 78050 Query: 373 acatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatca 432 |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct: 78049 acattaattttcgagctccactattatctgctacatttaaaagggtctgaggttaaatta 77990 Query: 433 tattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttc 492 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 77989 tattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtctttc 77930 Query: 493 cagaaagaaaaacc 506 ||||||||| |||| Sbjct: 77929 cagaaagaagaacc 77916 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 77879 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 77820 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 77819 gctgctctagctacagtttcggatactccgcccatttcataaagtat 77773
>gb|DQ069421.1| Acorus americanus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 299 bits (151), Expect = 6e-78 Identities = 315/369 (85%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 124 |||||| |||||||||| ||||||||||| || |||||||| | |||||||||| || Sbjct: 366 taatacctcaggagctagggaaactattttagtgaaattcaaatgtctcaattcccgagc 307 Query: 125 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 184 ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || || Sbjct: 306 gatcgcaccaaaaactcgagttccttttggattcccttcttgatcaatgacaactgctgc 247 Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 244 |||||||||||| || ||||| ||||||| || | ||||| |||||||||||||||||| Sbjct: 246 attgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtac 187 Query: 245 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 304 ||||||||||| | ||||| ||||||||||||| ||| | ||| | ||| |||||||| Sbjct: 186 aattacagctctgaccacttctgatctttctagagacatattgggtactgcttctttgat 127 Query: 305 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 364 ||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| Sbjct: 126 tacagcaacaataacgtcaccaatatgagcatatcggcgattac---tggctcctatgat 70 Query: 365 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 424 ||||||||||||||||| |||||| || || || || ||||||||||||||||||||||| Sbjct: 69 tcgaatacacatcaattctcgagccccgctgttatccgctacatttaaaagggtctgagg 10 Query: 425 ttgaatcat 433 ||||||||| Sbjct: 9 ttgaatcat 1
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 299 bits (151), Expect = 6e-78 Identities = 324/381 (85%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||| || |||||||||||||||||||| |||||||| || | ||||||||| Sbjct: 80082 tttataatacctcgggagctaatgaaactattttagtaaaattgaactgtctcaattctc 80141 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||||||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| | Sbjct: 80142 gggcaatcgcaccaaaaacgcgagttccttttggatttccttcttgatcaatcacaactg 80201 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 |||||||||||||||| || ||||| ||||||| || | ||| | ||||||||| |||| Sbjct: 80202 cagcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtac 80261 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 | ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||| Sbjct: 80262 ggacaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctt 80321 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 80322 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 80378 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| ||||||||||||||||| |||||| || || || ||||||||||| ||| |||||| Sbjct: 80379 tgattcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtct 80438 Query: 421 gaggttgaatcatattatttt 441 ||||||||||||||| ||||| Sbjct: 80439 gaggttgaatcatatcatttt 80459
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 299 bits (151), Expect = 6e-78 Identities = 318/373 (85%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82305 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82364 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| | Sbjct: 82365 gggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaactg 82424 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82425 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82484 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82485 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82544 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82545 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82601 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82602 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82661 Query: 421 gaggttgaatcat 433 ||||||||||||| Sbjct: 82662 gaggttgaatcat 82674 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 82882 tactccacccatttcataaagtat 82905
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 299 bits (151), Expect = 6e-78 Identities = 318/373 (85%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82317 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82376 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| | Sbjct: 82377 gggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaactg 82436 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82437 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82496 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82497 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82556 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82557 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82613 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82614 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82673 Query: 421 gaggttgaatcat 433 ||||||||||||| Sbjct: 82674 gaggttgaatcat 82686 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 82894 tactccacccatttcataaagtat 82917
>gb|DQ069423.1| Nuphar advena ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 291 bits (147), Expect = 1e-75 Identities = 314/369 (85%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 124 ||||||||| ||||||||||| ||||| || || ||||| || | ||||||||| || Sbjct: 366 taatacttcgggagctaatgagactatcttagtgaaatttaactgtctcaattcacgagc 307 Query: 125 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 184 ||||| |||||||||||||| |||||||| || |||| ||||||||| | ||| || || Sbjct: 306 aatcgaaccaaaaactcgagtgccttttggatttccttcttgatcaatgacaactgctgc 247 Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 244 |||||||||||| || ||||| ||||||| |||| ||||| |||||||||||||||||| Sbjct: 246 attgtcatcataccgtattatcataccgttgtcgcgtttgagttctttacatgtacgtac 187 Query: 245 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 304 ||||||||||| |||||||| |||||||| || ||||| | |||| ||| |||||||| Sbjct: 186 aattacagctctgattacttctgatctttccaggggcatatttggcactgcttctttgat 127 Query: 305 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 364 ||||||||||||||| ||||| ||| |||||||||| | ||||| ||||||||||| Sbjct: 126 tacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctcctatgat 70 Query: 365 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 424 |||||||||||||| |||||||||||| || ||||| |||||||| ||| |||||||||| Sbjct: 69 tcgaatacacatcagttttcgagctccgctgttgtccgctacattcaaatgggtctgagg 10 Query: 425 ttgaatcat 433 ||||||||| Sbjct: 9 ttgaatcat 1
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 291 bits (147), Expect = 1e-75 Identities = 323/381 (84%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||| || |||||||||||||||||||| |||||||| || | |||||||||| Sbjct: 82667 tttataatacctccggagctaatgaaactattttagtaaaatttaactgtctcaattccc 82726 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 |||||| || |||||||| |||||||| |||||||| |||| |||||| || | ||||| Sbjct: 82727 gggcaattgcaccaaaaacccgagttccctttgggtttccttcttgatcgatgacaaccg 82786 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 |||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| |||| Sbjct: 82787 cagcattgtcatcatatcgtattatcataccgttatcacgtttgagttctttacaagtac 82846 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||| | ||||| |||||| |||| ||||| | |||| ||| |||| Sbjct: 82847 gtacaattacagctctgaccacttctgatcttgctaggggcatgtttggcactgcttctt 82906 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||| |||||||||||||| ||||| ||| |||||||||| |||| | |||||||| Sbjct: 82907 tgatcacagcaacaataacgtcaccgatatgagcatatcgacgattgc---tagctccta 82963 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| ||||||||||||||||| |||||| || || || || |||||||| |||||||||| Sbjct: 82964 tgattcgaatacacatcaattctcgagccccgctgttatccgctacattcaaaagggtct 83023 Query: 421 gaggttgaatcatattatttt 441 ||||||||||||||| ||||| Sbjct: 83024 gaggttgaatcatatcatttt 83044
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 291 bits (147), Expect = 1e-75 Identities = 317/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82452 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82511 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82512 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82571 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 ||||||||||||| || || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82572 cagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 82631 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82632 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82691 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82692 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82748 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82749 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82808 Query: 421 gaggttgaatcat 433 ||||||||||||| Sbjct: 82809 gaggttgaatcat 82821 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 83025 tactccacccatttcataaagtat 83048
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 291 bits (147), Expect = 1e-75 Identities = 317/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82449 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82508 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82509 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82568 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 ||||||||||||| || || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82569 cagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 82628 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82629 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82688 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82689 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82745 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82746 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82805 Query: 421 gaggttgaatcat 433 ||||||||||||| Sbjct: 82806 gaggttgaatcat 82818 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 83022 tactccacccatttcataaagtat 83045
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 289 bits (146), Expect = 6e-75 Identities = 322/380 (84%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||| ||||| ||||| ||||||||||| |||||||| || | |||||||||| Sbjct: 85542 ttataatacctcaggggctaaggaaactattttagtaaaatttaactgtctcaattcccg 85601 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 181 | | ||||| ||||||| |||||||||||||||||| |||| ||||||||| ||||| || Sbjct: 85602 gacgatcgcaccaaaaattcgagttccttttgggtttccttcttgatcaataataactgc 85661 Query: 182 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 241 ||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| ||||| Sbjct: 85662 agcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacaggtacg 85721 Query: 242 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 301 |||||||||||||| |||||||| ||||||||||||||||| | || | | | ||||| Sbjct: 85722 tacaattacagctctgattacttctgatctttctagaggcatatttggtactacttcttt 85781 Query: 302 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 361 ||| |||||||||||||| ||||||||| |||| ||||| |||||| || |||||| Sbjct: 85782 gatcacagcaacaataacgtcaccaatatgagcgtatcggcgattac---tagttcctat 85838 Query: 362 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 421 || ||||||||||||||||| ||| || || || ||||| |||||||| ||| ||||||| Sbjct: 85839 gattcgaatacacatcaattctcgggccccgctgttgtccgctacattcaaatgggtctg 85898 Query: 422 aggttgaatcatattatttt 441 ||||||||||||| ||||| Sbjct: 85899 gggttgaatcatatcatttt 85918 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 561 aattgacttcgtatgggcattttactggccgctatggagatagctgctctagctacagtt 620 |||||| ||||||| |||||||| |||||||| || |||||| |||||||| | || Sbjct: 86054 aattgagttcgtataggcattttggacgccgctattgaaatagcttttctagctatattt 86113 Query: 621 tcagatactccccccatttcataaagtat 649 || | |||||| ||||||||||||||||| Sbjct: 86114 tctgctactccgcccatttcataaagtat 86142
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 287 bits (145), Expect = 2e-74 Identities = 321/379 (84%), Gaps = 3/379 (0%) Strand = Plus / Plus Query: 63 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 122 |||||||| ||||| ||||||||||||||||| |||||||| || | ||||||||| | Sbjct: 80638 tataatacctcaggggctaatgaaactattttagtaaaattgaactgtctcaattctcgg 80697 Query: 123 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 182 |||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 80698 gcaatcgcaccaaaaactcgcgttccttttggatttccttcttgatcaatcacaactgcg 80757 Query: 183 gcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgt 242 |||||||||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 80758 gcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacgg 80817 Query: 243 acaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttg 302 ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||||| Sbjct: 80818 acaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctttg 80877 Query: 303 attacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatg 362 || |||||||||||||| ||||||||| |||||||||| |||| | |||||||||| Sbjct: 80878 atcacagcaacaataacgtcaccaatatgagcatatcggcgattgc---tagctcctatg 80934 Query: 363 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctga 422 | ||||||||||||||||| |||||| || || || ||||||||||| ||| |||||||| Sbjct: 80935 attcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtctga 80994 Query: 423 ggttgaatcatattatttt 441 ||||||||||||| ||||| Sbjct: 80995 ggttgaatcatatcatttt 81013 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 81203 tactccacccatttcataaagtat 81226
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 287 bits (145), Expect = 2e-74 Identities = 318/375 (84%), Gaps = 3/375 (0%) Strand = Plus / Plus Query: 59 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 118 ||||||||||||||| ||||||||||| ||||| || || ||||| || | ||||||||| Sbjct: 86608 tatttataatacttcgggagctaatgagactatcttagtgaaatttaactgtctcaattc 86667 Query: 119 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 178 ||||||| ||||||||||| || |||||||| || |||| ||||||||| | ||| Sbjct: 86668 acgagcaatcgaaccaaaaactcgggtgccttttggatttccttcttgatcaatgacaac 86727 Query: 179 cgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 238 || |||||||||||||| |||||||| ||||||| |||| |||| |||||||||||| Sbjct: 86728 tgctgcattgtcatcataccggattatcataccgttgtcgcgcttgagttctttacatgt 86787 Query: 239 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 298 ||||||||||||||||| |||||||| |||||||| || ||||| | |||| ||| || Sbjct: 86788 acgtacaattacagctctgattacttctgatctttccaggggcatatttggcactgcttc 86847 Query: 299 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 358 ||||||||||||||||||||| ||||| ||| |||||||||| | ||||| |||||| Sbjct: 86848 tttgattacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctcc 86904 Query: 359 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 418 ||||| |||||||||||| | |||||| ||||| || ||||| |||||||| |||||||| Sbjct: 86905 tatgattcgaatacacataagttttcgggctccgctgttgtccgctacattcaaaagggt 86964 Query: 419 ctgaggttgaatcat 433 ||||||||||||||| Sbjct: 86965 ctgaggttgaatcat 86979 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||||| ||||| ||||| ||||| |||||||| ||||||||||||||||| Sbjct: 87172 atagcggctctggctacggtttctgatactccgcccatttcataaagtat 87221
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 287 bits (145), Expect = 2e-74 Identities = 321/379 (84%), Gaps = 3/379 (0%) Strand = Plus / Plus Query: 63 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 122 |||||||| ||||| ||||||||||||||||| |||||||| || | ||||||||| | Sbjct: 80636 tataatacctcaggggctaatgaaactattttagtaaaattgaactgtctcaattctcgg 80695 Query: 123 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 182 |||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 80696 gcaatcgcaccaaaaactcgcgttccttttggatttccttcttgatcaatcacaactgcg 80755 Query: 183 gcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgt 242 |||||||||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 80756 gcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacgg 80815 Query: 243 acaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttg 302 ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||||| Sbjct: 80816 acaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctttg 80875 Query: 303 attacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatg 362 || |||||||||||||| ||||||||| |||||||||| |||| | |||||||||| Sbjct: 80876 atcacagcaacaataacgtcaccaatatgagcatatcggcgattgc---tagctcctatg 80932 Query: 363 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctga 422 | ||||||||||||||||| |||||| || || || ||||||||||| ||| |||||||| Sbjct: 80933 attcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtctga 80992 Query: 423 ggttgaatcatattatttt 441 ||||||||||||| ||||| Sbjct: 80993 ggttgaatcatatcatttt 81011 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 81201 tactccacccatttcataaagtat 81224
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 285 bits (144), Expect = 9e-74 Identities = 323/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 82960 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 83019 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 83020 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 83079 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 83080 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 83139 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 83140 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 83199 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 83200 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 83256 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 83257 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 83316 Query: 421 gaggttgaatcatattattttg 442 |||||||||||||||||||||| Sbjct: 83317 gaggttgaatcatattattttg 83338
>gb|AF441853.1|AF441853 Cucumis sativus RBL1 mRNA, complete cds; chloroplast gene for chloroplast product Length = 703 Score = 285 bits (144), Expect = 9e-74 Identities = 323/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Minus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 436 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 377 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 376 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 317 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 316 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 257 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 256 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 197 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 196 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 140 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 139 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 80 Query: 421 gaggttgaatcatattattttg 442 |||||||||||||||||||||| Sbjct: 79 gaggttgaatcatattattttg 58
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 285 bits (144), Expect = 9e-74 Identities = 323/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 83188 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 83247 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 83248 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 83307 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 83308 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 83367 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 83368 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 83427 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 83428 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 83484 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 83485 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 83544 Query: 421 gaggttgaatcatattattttg 442 |||||||||||||||||||||| Sbjct: 83545 gaggttgaatcatattattttg 83566
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 283 bits (143), Expect = 4e-73 Identities = 316/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82940 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82999 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83000 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83059 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 |||||||||||||||| || |||||||| |||| || | ||||| ||||||||| || | Sbjct: 83060 cagcattgtcatcatatcgtattattatcccgttgtcacgtttgagttctttacaggtcc 83119 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83120 gcacaattacagctctgactacttctgatctttctaggggcatatttggtatggcttctt 83179 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83180 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83236 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| ||||||||||||||||| |||||| || || || || |||||||||||| |||||| Sbjct: 83237 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83296 Query: 421 gaggttgaatcat 433 ||||||||||||| Sbjct: 83297 gaggttgaatcat 83309 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 83517 tactccacccatttcataaagtat 83540
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 276 bits (139), Expect = 9e-71 Identities = 315/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83177 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83236 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83237 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83296 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || | Sbjct: 83297 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtcc 83356 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83357 gcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttctt 83416 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83417 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83473 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| ||||||||||||||||| |||||| || || || || |||||||||||| |||||| Sbjct: 83474 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83533 Query: 421 gaggttgaatcat 433 ||||||||||||| Sbjct: 83534 gaggttgaatcat 83546 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 83749 tactccacccatttcataaagtat 83772
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 276 bits (139), Expect = 9e-71 Identities = 317/375 (84%), Gaps = 6/375 (1%) Strand = Plus / Plus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||| ||||||||||||||||||||||| | ||| || || || ||||||| Sbjct: 79239 ttataatacctcaggagctaatgaaactattttcgcaaattt---ttgtcgcaattcccg 79295 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 181 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| || Sbjct: 79296 ggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataactgc 79355 Query: 182 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 241 ||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| ||||| Sbjct: 79356 agcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaagtacg 79415 Query: 242 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 301 ||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| ||||| Sbjct: 79416 tacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgcttcttt 79475 Query: 302 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 361 ||| |||||||||||||| |||||||||||||||||||| | || | ||||||||| Sbjct: 79476 gatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctcctat 79532 Query: 362 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 421 || ||||||||||||||||| |||||| || || |||||||||||||| ||| ||||||| Sbjct: 79533 gattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatgggtctg 79592 Query: 422 aggttgaatcatatt 436 ||||||||||||||| Sbjct: 79593 aggttgaatcatatt 79607
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 276 bits (139), Expect = 9e-71 Identities = 315/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83420 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83479 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83480 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83539 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 83540 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 83599 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 | ||||||||||||| | || ||| ||||||||||| ||||| | || | ||| |||| Sbjct: 83600 gcacaattacagctctgactatttctgatctttctaggggcatatttggtactgcttctt 83659 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83660 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83716 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| |||||||||||| |||| |||||| || || || || |||||||||||| |||||| Sbjct: 83717 tgattcgaatacacattaattctcgagccccgctgttatccgctacatttaaatgggtct 83776 Query: 421 gaggttgaatcat 433 ||||||||||||| Sbjct: 83777 gaggttgaatcat 83789 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 83997 tactccacccatttcataaagtat 84020
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 276 bits (139), Expect = 9e-71 Identities = 315/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83175 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83234 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83235 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83294 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || | Sbjct: 83295 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtcc 83354 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83355 gcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttctt 83414 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83415 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83471 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| ||||||||||||||||| |||||| || || || || |||||||||||| |||||| Sbjct: 83472 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83531 Query: 421 gaggttgaatcat 433 ||||||||||||| Sbjct: 83532 gaggttgaatcat 83544 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 83747 tactccacccatttcataaagtat 83770
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 274 bits (138), Expect = 3e-70 Identities = 314/372 (84%), Gaps = 3/372 (0%) Strand = Plus / Plus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||| || |||||||||||||||||||| || ||||| || | |||||||||| Sbjct: 85087 ttataatacctcgggagctaatgaaactattttagtgaaatttaactgtctcaattcccg 85146 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 181 ||| ||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 85147 ggcgatcgcaccaaaaattcgagttccttttggatttccttcttgatcaatgacaacggc 85206 Query: 182 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 241 ||||||||||||||| || ||||| || |||| |||| ||||| |||||||| ||||| Sbjct: 85207 agcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacgagtacg 85266 Query: 242 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 301 |||||||||||||| || ||||| |||||||||||||| | | || | ||| || || Sbjct: 85267 tacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttcctt 85326 Query: 302 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 361 ||| |||||||||||||| ||||||||| |||||||||| |||||| ||||||||| Sbjct: 85327 gatcacagcaacaataacgtcaccaatatgagcatatcggcgattac---tagctcctat 85383 Query: 362 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 421 |||||||||||||||||||| ||| || || || || ||||||||||| ||| ||||||| Sbjct: 85384 gactcgaatacacatcaattctcgggccccgctgttatctgctacattcaaatgggtctg 85443 Query: 422 aggttgaatcat 433 |||||||||||| Sbjct: 85444 aggttgaatcat 85455
>emb|X13336.1|CHSORP Spinacia oleracea plastid genes rps3, rps19, rpl14, rpl16 and rpl22 for ribosomal proteins S3, S19, L14, L16 and L22 Length = 4102 Score = 254 bits (128), Expect = 3e-64 Identities = 317/378 (83%), Gaps = 9/378 (2%) Strand = Plus / Minus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||| ||||||||||||||||||||||| | ||| || || || ||||||| Sbjct: 3697 ttataatacctcaggagctaatgaaactattttcgcaaattt---ttgtcgcaattcccg 3641 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc-- 179 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| Sbjct: 3640 ggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataacaac 3581 Query: 180 -gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 238 ||||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| || Sbjct: 3580 tgcagcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaagt 3521 Query: 239 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 298 |||||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| || Sbjct: 3520 acgtacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgcttc 3461 Query: 299 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 358 |||||| |||||||||||||| |||||||||||||||||||| | || | |||||| Sbjct: 3460 tttgatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctcc 3404 Query: 359 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 418 ||||| ||||||||||||||||| |||||| || || |||||||||||||| ||| |||| Sbjct: 3403 tatgattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatgggt 3344 Query: 419 ctgaggttgaatcatatt 436 |||||||||||||||||| Sbjct: 3343 ctgaggttgaatcatatt 3326
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 250 bits (126), Expect = 5e-63 Identities = 317/380 (83%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||| ||||||||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 80696 ttataatacctcaggagctaatgaaactattttagtaaagtttaattgtctcaattcccg 80755 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 181 | ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 80756 tgggatcgccccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgc 80815 Query: 182 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 241 |||||||||||||| || ||||| | || | | | ||||| ||||||||| ||||| Sbjct: 80816 ggcattgtcatcatatcgtattatcgtcccattgttacgtttgagttctttacaagtacg 80875 Query: 242 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 301 |||||||||||||| ||| ||||| |||||||||||||| | | || | ||| ||||| Sbjct: 80876 tacaattacagctctaatcacttctgatctttctagaggagtatttggtattgcttcttt 80935 Query: 302 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 361 |||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||| Sbjct: 80936 gattacagcaacaataacgtcaccaatatgagcatatcggcgattac---tagctcctat 80992 Query: 362 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 421 | ||||||||||||||||| || ||| || || |||||||||||||| ||| ||| || Sbjct: 80993 tattcgaatacacatcaattctctagccccgctgttgtctgctacattcaaataggtttg 81052 Query: 422 aggttgaatcatattatttt 441 ||||||||||||| ||||| Sbjct: 81053 tggttgaatcatatcatttt 81072
>dbj|AP004556.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026A08 Length = 171272 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 161 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 220 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 4998 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 4939 Query: 221 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 280 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 4938 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 4879 Query: 281 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 330 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 4878 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 4829
>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20 Length = 132976 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 161 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 220 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 88345 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 88286 Query: 221 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 280 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 88285 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 88226 Query: 281 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 330 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 88225 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 88176
>gb|DQ069424.1| Ranunculus macranthus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 238 bits (120), Expect = 2e-59 Identities = 310/370 (83%), Gaps = 5/370 (1%) Strand = Plus / Minus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg-g 123 |||||||||||| ||||||||||||||||| ||||||||||| | |||||| || ||| | Sbjct: 366 taatacttcaggggctaatgaaactattttagtaaaattcaactgtctcaactc-tcgag 308 Query: 124 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 183 | || || ||||||||||||||||||||||| || |||| ||||||||| | ||| || | Sbjct: 307 cgattgcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgctg 248 Query: 184 cattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgta 243 ||||||||||||| | ||||| ||||| | || | ||||| ||||||||| || |||| Sbjct: 247 cattgtcatcatattgtattatcataccattgtcacgtttgagttctttacacgtgcgta 188 Query: 244 caattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttga 303 |||||||||||| || ||||| ||||||| ||||||||| | ||| | ||| ||||||| Sbjct: 187 caattacagctctgatcacttctgatctttgtagaggcatattgggaactgcttctttga 128 Query: 304 ttacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatga 363 |||| ||||||||||| || |||||| ||||||| || |||||| ||||||||||| Sbjct: 127 ttaccgcaacaataacgtcgccaatatgagcataacgtcgattac---tagctcctatga 71 Query: 364 ctcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgag 423 || ||||||||| ||||||| ||| || || ||||| |||||||||||| |||||||| Sbjct: 70 ttctaatacacattaattttctagccccgctgttgtccgctacatttaaataggtctgag 11 Query: 424 gttgaatcat 433 |||||||||| Sbjct: 10 gttgaatcat 1
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 234 bits (118), Expect = 3e-58 Identities = 306/368 (83%), Gaps = 3/368 (0%) Strand = Plus / Plus Query: 66 aatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggca 125 ||||| || ||||||||||| ||||| || || |||||||| | |||||||||| | || Sbjct: 87322 aatacctcgggagctaatgatactatcttagtgaaattcaaatgtctcaattccccagcg 87381 Query: 126 atcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagca 185 |||| ||||| ||||||||||||||||| || || | | ||||||| | ||| || ||| Sbjct: 87382 atcgaaccaaagactcgagttccttttggatttccctctggatcaataacaactgctgca 87441 Query: 186 ttgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtaca 245 ||||||||||| || ||||||||||||| || | ||||| ||||||||||||||||||| Sbjct: 87442 ttgtcatcatatcgtattattataccgttgtcacgtttgagttctttacatgtacgtaca 87501 Query: 246 attacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgatt 305 |||||||||| || ||||| |||||||| || ||||| | ||| | ||| ||||||||| Sbjct: 87502 attacagctctgatcacttctgatctttccaggggcatattgggtactgcttctttgatt 87561 Query: 306 acagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgact 365 |||||||||||||| ||||||||| |||||||||| | |||| |||||||| || | Sbjct: 87562 acagcaacaataacgtcaccaatatgagcatatcgggggttac---tagctcctacgatt 87618 Query: 366 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 425 |||||||||||||||| |||||| || || ||||| |||||||| ||| ||| |||| | Sbjct: 87619 cgaatacacatcaattctcgagccccgctgttgtccgctacattcaaataggtttgagct 87678 Query: 426 tgaatcat 433 |||||||| Sbjct: 87679 tgaatcat 87686 Score = 44.1 bits (22), Expect = 0.57 Identities = 43/50 (86%) Strand = Plus / Plus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||||||||||| || |||||||| | ||||| |||||||||| |||||| Sbjct: 87859 atagctgctctggcgacagtttctggcactccgcccatttcatgaagtat 87908
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 234 bits (118), Expect = 3e-58 Identities = 315/380 (82%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 85802 ttataatacctcaggtgctaatgaaactattttagtgaaacttaactctctcaattcgtg 85861 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 181 ||||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 85862 ggcaatcgcaccaaaaactcgggttccttttggatttccttcttgatcaatgacaacagc 85921 Query: 182 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 241 ||||||||||||||| || ||||| |||||||| || ||||| | ||||||||| ||||| Sbjct: 85922 agcattgtcatcatatcgtattatgataccgtcgtcacatttaagttctttacaagtacg 85981 Query: 242 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 301 |||||||||||||| | ||||| ||||||||||| | | || ||||| || || Sbjct: 85982 tacaattacagctctgaccacttctgatctttctagggaggtgcttggtaatgcttcctt 86041 Query: 302 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 361 ||| ||||||||||||| ||||| ||| |||||||||| |||||| |||||| || Sbjct: 86042 gatcacagcaacaataatgtcaccgatatgagcatatcgacgattac---tagctccgat 86098 Query: 362 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 421 || |||||||||||| |||| |||||| ||||| || || || ||||| ||| |||| || Sbjct: 86099 gattcgaatacacattaattctcgagccccactgttatccgcgacattcaaacgggtttg 86158 Query: 422 aggttgaatcatattatttt 441 |||||||||||||| ||||| Sbjct: 86159 aggttgaatcatatcatttt 86178
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 218 bits (110), Expect = 2e-53 Identities = 313/380 (82%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||| ||||| ||||||||||||||||| || ||||| || | ||||||||| Sbjct: 85487 ttataatacctcaggtgctaatgaaactattttagtgaaatttaactgtctcaattctcg 85546 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 181 ||||||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 85547 ggcaatcgcaccaaaaactcgagttccttttggatttccttcttgatcaatcacaactgc 85606 Query: 182 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 241 |||||| |||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 85607 agcattatcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacg 85666 Query: 242 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 301 |||||||||||||| || || || |||||||||||||| | | || ||||| || || Sbjct: 85667 tacaattacagctctgatcacctctgatctttctagaggtgtgtttggtaatgcttcctt 85726 Query: 302 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 361 ||| ||||||||||||| ||||| ||| |||||||||| |||||| ||||||||| Sbjct: 85727 gatcacagcaacaataatgtcaccgatatgagcatatcggcgattac---tagctcctat 85783 Query: 362 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 421 || || ||||||||| |||| ||| || || || || || |||||||| ||| || | || Sbjct: 85784 gattctaatacacattaattctcgggccccgctgttatccgctacattcaaatggctttg 85843 Query: 422 aggttgaatcatattatttt 441 |||||||||||||| ||||| Sbjct: 85844 aggttgaatcatatcatttt 85863 Score = 50.1 bits (25), Expect = 0.009 Identities = 76/93 (81%) Strand = Plus / Plus Query: 557 aataaattgacttcgtatgggcattttactggccgctatggagatagctgctctagctac 616 |||||||||| ||||||| |||||||| |||||||| || ||||| ||| |||| Sbjct: 85998 aataaattgagttcgtataggcattttggacgccgctattgaaatagcctttctggctat 86057 Query: 617 agtttcagatactccccccatttcataaagtat 649 | |||| | |||||| ||||||||||||||||| Sbjct: 86058 attttctgctactccgcccatttcataaagtat 86090
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 216 bits (109), Expect = 7e-53 Identities = 312/377 (82%), Gaps = 7/377 (1%) Strand = Plus / Plus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||||||||||||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 79787 ttataatacttcaggagctaatgaaactattttagtaaagtttaattgtctcaattcccg 79846 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 181 | ||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| || Sbjct: 79847 tgggatcgccccaaaaacgcgagttccttttggatttccttcttgatcaatgacaactgc 79906 Query: 182 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 241 |||||||| ||||| || ||||| | || | | | ||||| ||||||||| ||||| Sbjct: 79907 ggcattgtcgtcatatcgtattatcgtcccattcttacgtttgagttctttacaagtacg 79966 Query: 242 tacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtct 299 |||||||||||||| | ||||| ||||||||||||| | ||||||| | ||| || Sbjct: 79967 tacaattacagctctgaccacttctgatctttctagagtagtatttggg--attgcttcc 80024 Query: 300 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 359 |||||||||||||||||||| ||||||||| ||||||| || |||||| ||||||| Sbjct: 80025 ttgattacagcaacaataacgtcaccaatatgagcatagcggcgattac---tagctcct 80081 Query: 360 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 419 || | |||||||||||||||||||| ||| || || |||||||||||||| ||| ||| Sbjct: 80082 attattcgaatacacatcaattttctagccccgctgttgtctgctacattcaaataggtt 80141 Query: 420 tgaggttgaatcatatt 436 || |||||||||||||| Sbjct: 80142 tgtggttgaatcatatt 80158
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 212 bits (107), Expect = 1e-51 Identities = 313/381 (82%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 ||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 78574 tttataatatctcaggcgctaatgaaactattttagtgaaattgaactgtctcaattccc 78633 Query: 121 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 180 ||| || |||| ||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 78634 gggcgattgcgcaaaaaattcgagttccttttggatttccttcttgatcaatgacaactg 78693 Query: 181 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 240 ||||||| |||||||| | ||||||||||| | | ||||| ||||||||| |||| Sbjct: 78694 cagcattatcatcatactgtattattataccattgctacgtttgagttctttacaagtac 78753 Query: 241 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 300 ||||||||||||||| || ||||| |||||||||| || | | || | ||| |||| Sbjct: 78754 gtacaattacagctctgatcacttctgatctttctaagggtgtattcggtactgcttctt 78813 Query: 301 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 360 ||||||||||||||| || ||||||||| ||| ||||| |||||| ||| ||||| Sbjct: 78814 tgattacagcaacaacaatgtcaccaatataagcgtatcgtcgattactagc---tccta 78870 Query: 361 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 420 ||| |||||||||||||||||| || ||||| ||||| || |||||||||||| |||| | Sbjct: 78871 tgattcgaatacacatcaatttgcgggctccgctattatcggctacatttaaatgggttt 78930 Query: 421 gaggttgaatcatattatttt 441 ||||||||||||||| ||||| Sbjct: 78931 gaggttgaatcatatcatttt 78951
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 210 bits (106), Expect = 4e-51 Identities = 277/334 (82%), Gaps = 15/334 (4%) Strand = Plus / Minus Query: 52 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 111 |||||||||||| |||||| ||||||||| |||| ||| |||| || ||||||| || Sbjct: 99133 ctactagtatttttaatacctcaggagctcatgagactcttttagtgaaattcataagtc 99074 Query: 112 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 171 |||||||| || ||||| ||||||||||||||||||||||| || |||| |||||||| Sbjct: 99073 tcaattcccgagcgatcgcaccaaaaactcgagttccttttggatttccttcttgatcaa 99014 Query: 172 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 231 | | ||||| |||||||| || ||||| ||||||| || | ||||| ||||| Sbjct: 99013 tgacaaccg--------tcatcatatcgtattatcataccgttgtcacgtttgagttctt 98962 Query: 232 tacatgtacgtacaattacagctcgaattacttcgg----atctttctagaggcatttgg 287 ||||||||||||||||||||||||| ||||||| | |||||||||||||||||| | Sbjct: 98961 tacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcattttg 98902 Query: 288 ggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgatta 347 |||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||| Sbjct: 98901 ggcactgcttctttgattacagcaacaataacgtcaccaatatgagcatatcagtgatta 98842 Query: 348 ccagcagctcctatgactcgaatacacatcaatt 381 | ||||||||| || ||||||||| ||||||| Sbjct: 98841 c---cagctcctaagattcgaatacatatcaatt 98811
>gb|M15176.1|MZECPPG Zea mays chloroplast Eco x DNA Length = 1368 Score = 194 bits (98), Expect = 3e-46 Identities = 104/106 (98%) Strand = Plus / Minus Query: 236 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1365 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 1306 Query: 296 gtctttgattacagcaacaataacatcaccaatacgagcatatcgc 341 ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1305 gtctttgattacagcaataataacatcaccaatacgagcatatcgc 1260 Score = 178 bits (90), Expect = 2e-41 Identities = 111/118 (94%) Strand = Plus / Minus Query: 532 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactggccg 591 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct: 1068 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactggcag 1009 Query: 592 ctatggagatagctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||| Sbjct: 1008 ctatagagatagctgctctagctacagtttcggatactccgctcatttcataaagtat 951 Score = 161 bits (81), Expect = 4e-36 Identities = 101/105 (96%), Gaps = 2/105 (1%) Strand = Plus / Minus Query: 402 gctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttca 461 ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct: 1199 gctacatttaaaagggtctgaggttgaatcatattatttgg-tttccatttgttatttca 1141 Query: 462 a-tgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 505 | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1140 aatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 1096 Score = 107 bits (54), Expect = 5e-20 Identities = 60/62 (96%) Strand = Plus / Minus Query: 280 gcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatc 339 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1261 gcatttggggcactgcgtctttgattacagcaataataacatcaccaatacgagcatatc 1202 Query: 340 gc 341 || Sbjct: 1201 gc 1200
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 124 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 54859 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 54918 Query: 125 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 184 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 54919 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 54977 Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaa 226 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 54978 attgttgtcatagcgtattattataccgtcttcgcatttgaa 55019
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 124 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 137662 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 137721 Query: 125 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 184 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 137722 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 137780 Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaa 226 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 137781 attgttgtcatagcgtattattataccgtcttcgcatttgaa 137822
>dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091C18 Length = 154416 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 124 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 130073 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 130132 Query: 125 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 184 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 130133 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 130191 Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaa 226 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 130192 actgttgtcatagcgtattattataccgtcttcgcatttgaa 130233
>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H03 Length = 189893 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 124 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 66843 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 66902 Query: 125 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 184 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 66903 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 66961 Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaa 226 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 66962 actgttgtcatagcgtattattataccgtcttcgcatttgaa 67003
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 170 bits (86), Expect = 4e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 132 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 191 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 331098 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 331047 Query: 192 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 251 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 331046 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330987 Query: 252 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 307 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330986 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330927 Query: 308 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 367 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330926 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330870 Query: 368 aatacacatcaatt 381 |||||| ||||||| Sbjct: 330869 aatacatatcaatt 330856 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 52 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 105 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 331166 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 331113
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 170 bits (86), Expect = 4e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 132 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 191 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330288 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330237 Query: 192 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 251 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330236 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330177 Query: 252 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 307 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330176 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330117 Query: 308 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 367 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330116 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330060 Query: 368 aatacacatcaatt 381 |||||| ||||||| Sbjct: 330059 aatacatatcaatt 330046 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 52 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 105 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330356 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330303
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 170 bits (86), Expect = 4e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 132 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 191 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330285 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330234 Query: 192 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 251 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330233 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330174 Query: 252 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 307 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330173 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330114 Query: 308 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 367 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330113 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330057 Query: 368 aatacacatcaatt 381 |||||| ||||||| Sbjct: 330056 aatacatatcaatt 330043 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 52 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 105 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330353 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330300
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 170 bits (86), Expect = 4e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 132 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 191 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330142 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330091 Query: 192 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 251 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330090 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330031 Query: 252 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 307 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330030 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 329971 Query: 308 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 367 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 329970 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 329914 Query: 368 aatacacatcaatt 381 |||||| ||||||| Sbjct: 329913 aatacatatcaatt 329900 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 52 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 105 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330210 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330157
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 163 bits (82), Expect = 9e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Minus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 124 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 5365 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 5306 Query: 125 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 184 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 5305 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 5247 Query: 185 attgtcatcatagcggattattataccgtcttcgcatttgaa 226 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 5246 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 5205
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 221 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 276 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 37711 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 37652 Query: 277 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 336 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 37651 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 37592 Query: 337 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 381 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 37591 atcagtgattac---cagctcctaagattcgaatacatatcaatt 37550
>dbj|D13105.1|RICMT09 Oryza sativa (japonica cultivar-group) mitochondrial rp114 pseudogene, clone:pMTVSCT13 Length = 645 Score = 155 bits (78), Expect = 2e-34 Identities = 210/254 (82%), Gaps = 15/254 (5%) Strand = Plus / Plus Query: 132 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 191 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 161 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 212 Query: 192 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 251 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 213 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 272 Query: 252 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 307 ||||| ||||||| | |||||||||||| ||||| ||||| ||| ||||||||||| Sbjct: 273 gctcgtcttacttctgtctgatctttctagagccattttgggcactgcttctttgattac 332 Query: 308 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 367 |||||||||||| || |||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 333 agcaacaataacgtccccaatatgagcatatcagtgattac---cagctcctaagattcg 389 Query: 368 aatacacatcaatt 381 |||||| ||||||| Sbjct: 390 aatacatatcaatt 403 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Plus Query: 52 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 105 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 93 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 146
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 153 bits (77), Expect = 9e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 426 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147871 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 147812 Query: 486 gtctttccagaaagaaaaacc 506 |||||||||||||||| |||| Sbjct: 147811 gtctttccagaaagaagaacc 147791 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 147753 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 147694 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 147693 gctgctctagctacagtttcggatactccgcccatttcataaagtat 147647
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 153 bits (77), Expect = 9e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 426 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55633 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 55574 Query: 486 gtctttccagaaagaaaaacc 506 |||||||||||||||| |||| Sbjct: 55573 gtctttccagaaagaagaacc 55553 Score = 149 bits (75), Expect = 1e-32 Identities = 99/107 (92%) Strand = Plus / Minus Query: 543 tatatctctaatcgaataaattgacttcgtatgggcattttactggccgctatggagata 602 ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 55515 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggcagctatggaaata 55456 Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 55455 gctgctctagctacagtttcggatactccgcccatttcataaagtat 55409
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 150 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 209 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 33438 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 33379 Query: 210 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 269 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 33378 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 33319 Query: 270 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 329 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 33318 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 33259 Query: 330 cgagcatat 338 |||| |||| Sbjct: 33258 cgagtatat 33250
>gb|AF536225.1| Vigna angularis chloroplast S10B operon, partial sequence Length = 6550 Score = 141 bits (71), Expect = 3e-30 Identities = 179/215 (83%) Strand = Plus / Minus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 5904 ttataatacctcaggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 5845 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 181 ||| || |||| ||| | ||||||||||||||| || |||| ||||||||||||||| || Sbjct: 5844 ggcgattgcgcaaaagattcgagttccttttggatttccttcttgatcaattataactgc 5785 Query: 182 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 241 |||||| |||||||| | ||||||||||||| | ||| | || |||||| ||||| Sbjct: 5784 agcattatcatcatactgaattattataccgttgctacgttttagttgtttacaagtacg 5725 Query: 242 tacaattacagctcgaattacttcggatctttcta 276 |||||||||||||| || ||||| |||||||||| Sbjct: 5724 tacaattacagctctgatcacttcagatctttcta 5690 Score = 65.9 bits (33), Expect = 2e-07 Identities = 116/143 (81%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 299 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 358 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 5667 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 5611 Query: 359 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 418 || || |||||||||||||| || || ||||| || || || |||||||| ||| | || Sbjct: 5610 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 5551 Query: 419 ctgaggttgaatcatattatttt 441 |||||||||||||||| ||||| Sbjct: 5550 ttgaggttgaatcatatcatttt 5528 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 5321 tactccacccatttcataaagtat 5298
>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1046_F10 Length = 118472 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 84 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 143 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 87867 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 87808 Query: 144 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 203 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 87807 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 87749 Query: 204 attataccgtcttcgcatttgaa 226 ||||||||||||||||||||||| Sbjct: 87748 attataccgtcttcgcatttgaa 87726
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 139 bits (70), Expect = 1e-29 Identities = 306/382 (80%), Gaps = 7/382 (1%) Strand = Plus / Minus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||| || || ||||||||||||||||| || ||||| || | ||||||||| Sbjct: 45042 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcg 44983 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 181 ||| || ||| ||||| ||||||||||||||| || |||| || |||||| | |||||| Sbjct: 44982 ggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgc 44923 Query: 182 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 241 ||||| |||||||| ||||||||||| | | ||| | ||||||||| ||||| Sbjct: 44922 cgcattatcatcatactttattattataccattactacgttttagttctttacaagtacg 44863 Query: 242 tacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtct 299 |||||||||||| | || ||||| |||||||||| || | |||||| | ||| | | Sbjct: 44862 tacaattacagccctgatcacttcagatctttctaaagatgaatttggtac--tgctttt 44805 Query: 300 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 359 |||||||||||||||| || ||||||||| |||||| || |||||| ||| |||| Sbjct: 44804 ttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagc---tcct 44748 Query: 360 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 419 |||| ||||||||||||||||| || ||||| ||||| || |||||||||||| ||| Sbjct: 44747 atgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtt 44688 Query: 420 tgaggttgaatcatattatttt 441 |||||||||||||||| ||||| Sbjct: 44687 tgaggttgaatcatatcatttt 44666
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 125 bits (63), Expect = 2e-25 Identities = 177/215 (82%) Strand = Plus / Plus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||| || || ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 79709 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 79768 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 181 ||| || || | ||| | ||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 79769 ggcgattgcacaaaagattcgagttccttttggatttccttcttgatcaatgacaactgc 79828 Query: 182 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 241 |||||| |||||||| | ||||||||||||| | ||||| ||||||||| ||||| Sbjct: 79829 agcattatcatcatactgaattattataccgttgctacgtttgagttctttacaagtacg 79888 Query: 242 tacaattacagctcgaattacttcggatctttcta 276 |||||||||||||| || ||||| |||||||||| Sbjct: 79889 tacaattacagctctgatcacttctgatctttcta 79923 Score = 81.8 bits (41), Expect = 3e-12 Identities = 118/143 (82%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 299 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 358 ||||||||||||||||| || ||||||||| ||||||||| |||||| ||| ||| Sbjct: 79946 tttgattacagcaacaacaatgtcaccaatataagcatatcgtcgattactagc---tcc 80002 Query: 359 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 418 || || |||||||||||||| || || ||||| ||||| || |||||||| ||| | || Sbjct: 80003 taggattcgaatacacatcagttcgcgtgctccgctattatcagctacattcaaatgagt 80062 Query: 419 ctgaggttgaatcatattatttt 441 |||||||||||||||| ||||| Sbjct: 80063 ttgaggttgaatcatatcatttt 80085
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 123 bits (62), Expect = 8e-25 Identities = 119/138 (86%) Strand = Plus / Plus Query: 57 agtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaat 116 |||| |||||||||||| ||||| |||||||||||||| || |||||||||| ||||||| Sbjct: 60553 agtacttataatacttcgggagccaatgaaactattttcgtgaaattcaattgtctcaat 60612 Query: 117 tcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattata 176 |||| |||| || ||||||||||||||||||||||| || |||| |||||||| | | Sbjct: 60613 tcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgaca 60672 Query: 177 accgcagcattgtcatca 194 || || |||||||||||| Sbjct: 60673 acggctgcattgtcatca 60690 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 602 agctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 61101 agctgctctagcgacggtttcggatactccgcccatttcataaagtat 61148 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 354 gctcctatgactcgaatacacatcaattttcgagctccact 394 ||||||| |||||||||||||| | |||||| |||||||| Sbjct: 60847 gctcctagaactcgaatacacattatttttcgggctccact 60887
>emb|X68048.1|CHPVHISG Phaseolus vulgaris chloroplast DNA for tRNA-His gene region Length = 1698 Score = 117 bits (59), Expect = 5e-23 Identities = 176/215 (81%) Strand = Plus / Plus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||| || || ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 954 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 1013 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 181 ||| || |||| ||| | ||||||||||||||| || |||| ||||||||||| ||| || Sbjct: 1014 ggcgattgcgcaaaagattcgagttccttttggatttccttcttgatcaattacaactgc 1073 Query: 182 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 241 |||||| |||||||| | ||||||||||||| | ||| | || |||||| || || Sbjct: 1074 agcattatcatcatactgaattattataccgttgctacgttttagttgtttacaagtccg 1133 Query: 242 tacaattacagctcgaattacttcggatctttcta 276 |||||||||||||| || ||||| |||||||||| Sbjct: 1134 tacaattacagctctgatcacttctgatctttcta 1168 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 1529 tactccacccatttcataaagtat 1552 Score = 40.1 bits (20), Expect = 8.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 406 catttaaaagggtctgaggttgaatcatattatttt 441 |||||||| | || |||||||||||||||| ||||| Sbjct: 1296 catttaaatgagtttgaggttgaatcatatcatttt 1331
>gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete sequence Length = 130054 Score = 115 bits (58), Expect = 2e-22 Identities = 249/310 (80%), Gaps = 7/310 (2%) Strand = Plus / Plus Query: 134 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 193 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 30545 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 30604 Query: 194 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 253 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 30605 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 30664 Query: 254 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 311 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 30665 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 30722 Query: 312 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 371 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 30723 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 30779 Query: 372 cacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatc 431 |||||||||| || ||||| ||||| || |||||||||||| ||| |||||||||||| Sbjct: 30780 cacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatc 30839 Query: 432 atattatttt 441 |||| ||||| Sbjct: 30840 atatcatttt 30849
>gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete sequence Length = 140624 Score = 115 bits (58), Expect = 2e-22 Identities = 249/310 (80%), Gaps = 7/310 (2%) Strand = Plus / Minus Query: 134 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 193 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 114958 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 114899 Query: 194 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 253 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 114898 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 114839 Query: 254 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 311 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 114838 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 114781 Query: 312 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 371 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 114780 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 114724 Query: 372 cacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatc 431 |||||||||| || ||||| ||||| || |||||||||||| ||| |||||||||||| Sbjct: 114723 cacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatc 114664 Query: 432 atattatttt 441 |||| ||||| Sbjct: 114663 atatcatttt 114654
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 115 bits (58), Expect = 2e-22 Identities = 118/138 (85%) Strand = Plus / Plus Query: 57 agtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaat 116 |||| |||||| ||||| ||||| |||||||||||||| || |||||||||| ||||||| Sbjct: 58649 agtacttataagacttcgggagccaatgaaactattttagtgaaattcaattgtctcaat 58708 Query: 117 tcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattata 176 |||| |||| || ||||||||||||||||||||||| || |||| |||||||| | | Sbjct: 58709 tcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgaca 58768 Query: 177 accgcagcattgtcatca 194 || || |||||||||||| Sbjct: 58769 acggctgcattgtcatca 58786 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 602 agctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 59191 agctgctctagcgacggtttcggatactccgcccatttcataaagtat 59238 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 354 gctcctatgactcgaatacacatcaattttcgagctccact 394 ||||||| |||||||||||||| | |||||| |||||||| Sbjct: 58943 gctcctagaactcgaatacacattatttttcgggctccact 58983
>gb|M60180.1|OBECPRPB O.ammophila ribosomal protein L14 and S8 (rpl14, rps8) genes, 5' end and 3' end Length = 625 Score = 97.6 bits (49), Expect = 4e-17 Identities = 82/93 (88%) Strand = Plus / Plus Query: 62 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 121 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 524 ttataatacctcaggtgctaatgaaactattttagtgaaacttaactctctcaattcgtg 583 Query: 122 ggcaatcgcgccaaaaactcgagttccttttgg 154 ||||||||| ||||||||||| ||||||||||| Sbjct: 584 ggcaatcgcaccaaaaactcgggttccttttgg 616
>gb|DQ069419.1| Typha latifolia ribosomal protein L16 (rpl16) gene, partial cds; chloroplast Length = 408 Score = 93.7 bits (47), Expect = 7e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 560 aaattgacttcgtatgggcattttactggccgctatggagatagctgctctagctacagt 619 ||||||| ||||||| |||||||| | || ||||| | ||||||||||||||||||||| Sbjct: 396 aaattgagttcgtataggcattttgcgcgcagctattgcgatagctgctctagctacagt 337 Query: 620 ttcagatactccccccatttcataaag 646 ||| |||||||| |||||||||||||| Sbjct: 336 ttctgatactccacccatttcataaag 310
>dbj|AB077366.1| Iris bungei plastid DNA, intron region Length = 576 Score = 93.7 bits (47), Expect = 7e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 406 catttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgc 465 |||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||| Sbjct: 568 catttaaaagggtctgaggttgaatcatatcatttttatttgaatctgttatttcaatgc 509 Query: 466 aaa 468 ||| Sbjct: 508 aaa 506 Score = 75.8 bits (38), Expect = 2e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||||||||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 330 atagctgctctggctacagtttctgatactccgcccatttcataaagtat 281
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 91.7 bits (46), Expect = 3e-15 Identities = 106/126 (84%) Strand = Plus / Minus Query: 69 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatc 128 |||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| Sbjct: 41481 acttcaggagctaaagaaactattttagtaaaatttaagtctctcaattctctggcaact 41422 Query: 129 gcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattg 188 | ||||||||||| |||||| |||| ||||||| ||||| || | |||||||||||| Sbjct: 41421 ggaccaaaaactcgtgttcctcttggattgccttcttgattgatgacaaccgcagcatta 41362 Query: 189 tcatca 194 |||||| Sbjct: 41361 tcatca 41356 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 366 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 425 ||||||||||| | ||||||||||| || ||||| |||||||||||| | ||||||| Sbjct: 41187 cgaatacacatgagctttcgagctccgctgttgtcggctacatttaaataagactgaggt 41128 Query: 426 tgaatcat 433 |||||||| Sbjct: 41127 tgaatcat 41120
>dbj|AB077365.1| Iris dichotoma plastid DNA, intron region Length = 566 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 560 aaattgacttcgtatgggcattttactggccgctatggagatagctgctctagctacagt 619 ||||||| ||||||| |||||||| | || ||||| || ||||||||||| |||||||| Sbjct: 379 aaattgagttcgtataggcattttgcacgcagctattgaaatagctgctctggctacagt 320 Query: 620 ttcagatactccccccatttcataaagtat 649 ||| |||||||| ||||||||||||||||| Sbjct: 319 ttctgatactccgcccatttcataaagtat 290 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 406 catttaaaagggtctgaggttgaatcat 433 |||||||||||||||||||||||||||| Sbjct: 558 catttaaaagggtctgaggttgaatcat 531
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 87.7 bits (44), Expect = 4e-14 Identities = 113/136 (83%) Strand = Plus / Plus Query: 59 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 118 ||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||| ||||| Sbjct: 76250 tatttataaaacttctggagctaacgaaactattttagtaaaattagattctcttaattc 76309 Query: 119 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 178 ||||| | ||||||||||||||||||||||| || |||| ||||| ||| | ||| Sbjct: 76310 tctagcaattggaccaaaaactcgagttccttttggatttccttcttgattaataacaac 76369 Query: 179 cgcagcattgtcatca 194 || ||||| |||||| Sbjct: 76370 tgctgcattatcatca 76385 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 356 tcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaag 415 |||||| |||||||| ||||| | |||||||||||||||||| ||||| ||||||||| Sbjct: 76544 tcctataactcgaatgcacattagttttcgagctccactattatctgcaacatttaaata 76603 Query: 416 ggtctgaggttgaatcat 433 || |||||||||||||| Sbjct: 76604 agtttgaggttgaatcat 76621 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 225 aattctttacatgtacgtacaattacagctc 255 ||||||||||| ||||||||||||||||||| Sbjct: 76416 aattctttacacgtacgtacaattacagctc 76446
>emb|AL663020.4|OSJN00220 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0049H08, complete sequence Length = 186642 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 238 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 288 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 94927 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 94877
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 85.7 bits (43), Expect = 2e-13 Identities = 114/135 (84%), Gaps = 2/135 (1%) Strand = Plus / Plus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 120 |||||||||||||||| ||||| ||||||||||| |||||||| |||| | ||||| | Sbjct: 79910 tttataatacttcaggtgctaacgaaactattttagtaaaattagattcacgtaattc-t 79968 Query: 121 cg-gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 179 || |||| | ||||||||||||||||||||| || || |||| ||||| ||| ||||| Sbjct: 79969 cgtgcaacagggccaaaaactcgagttcctttaggatttccttcttgattaataataact 80028 Query: 180 gcagcattgtcatca 194 |||||||| |||||| Sbjct: 80029 gcagcattatcatca 80043 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 369 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 428 |||||||| ||||| || ||||||||||| || |||||||||||| || ||||||||| Sbjct: 80215 atacacattaatttgcgcgctccactattatcagctacatttaaataagtttgaggttga 80274 Query: 429 atcat 433 ||||| Sbjct: 80275 atcat 80279 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 600 atagctgctctagctacagtttcagatactcc 631 |||||||||||||| ||| |||||| |||||| Sbjct: 80507 atagctgctctagcaacactttcaggtactcc 80538
>gb|DQ069420.1| Yucca schidigera ribosomal protein L16 (rpl16) gene, partial cds; chloroplast Length = 390 Score = 83.8 bits (42), Expect = 7e-13 Identities = 78/90 (86%) Strand = Plus / Minus Query: 560 aaattgacttcgtatgggcattttactggccgctatggagatagctgctctagctacagt 619 ||||||| ||||||| |||||||| | || ||||| || ||||||| ||| |||||||| Sbjct: 387 aaattgagttcgtataggcattttgcacgcagctattgaaatagctgttctggctacagt 328 Query: 620 ttcagatactccccccatttcataaagtat 649 ||| |||||||| ||||||||||||||||| Sbjct: 327 ttcggatactccacccatttcataaagtat 298
>dbj|AB087469.1| Anthoceros formosae chloroplast rpl14 mRNA for ribosomal protein L14, complete cds Length = 460 Score = 81.8 bits (41), Expect = 3e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 365 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 413 |||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 322 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 370 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 227 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 283 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 187 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 243 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ccaaaaactcgagttccttt 151 |||||||||||||||||||| Sbjct: 92 ccaaaaactcgagttccttt 111
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 81.8 bits (41), Expect = 3e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 365 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 413 |||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 100021 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 100069 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 227 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 283 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 99886 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 99942 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ccaaaaactcgagttccttt 151 |||||||||||||||||||| Sbjct: 99791 ccaaaaactcgagttccttt 99810
>gb|M60179.1|OBECPRPA O.ammophila ribosomal protein L14 and L16 (rpl14, rpl16) genes, 3' end and 5' end Length = 542 Score = 81.8 bits (41), Expect = 3e-12 Identities = 112/135 (82%), Gaps = 3/135 (2%) Strand = Plus / Plus Query: 307 cagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactc 366 |||||||||||| ||||| ||| |||||||||| |||||| ||| ||| |||| || Sbjct: 1 cagcaacaataatgtcaccgatatgagcatatcgacgattactagc---tccgatgattc 57 Query: 367 gaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggtt 426 |||||||||| |||| |||||| ||||| || || || ||||| ||| |||| ||||||| Sbjct: 58 gaatacacattaattctcgagccccactgttatccgcgacattcaaacgggtttgaggtt 117 Query: 427 gaatcatattatttt 441 ||||||||| ||||| Sbjct: 118 gaatcatatcatttt 132
>gb|AC135498.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0010M24, complete sequence Length = 164853 Score = 79.8 bits (40), Expect = 1e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 570 cgtatgggcattttactggccgctatggagatagctgctctagctacagtttcagatact 629 ||||| |||||||| |||| |||||||| ||||||||||||||||| | ||| | |||| Sbjct: 75834 cgtataggcattttggtggcagctatggaaatagctgctctagctactgcttcgggtact 75775 Query: 630 ccccccatttcataaagtat 649 || ||||||||||||||||| Sbjct: 75774 ccacccatttcataaagtat 75755
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 79.8 bits (40), Expect = 1e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 570 cgtatgggcattttactggccgctatggagatagctgctctagctacagtttcagatact 629 ||||| |||||||| |||| |||||||| ||||||||||||||||| | ||| | |||| Sbjct: 9208186 cgtataggcattttggtggcagctatggaaatagctgctctagctactgcttcgggtact 9208245 Query: 630 ccccccatttcataaagtat 649 || ||||||||||||||||| Sbjct: 9208246 ccacccatttcataaagtat 9208265 Score = 48.1 bits (24), Expect = 0.037 Identities = 36/40 (90%) Strand = Plus / Minus Query: 313 caataacatcaccaatacgagcatatcgctgattaccagc 352 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11796144 caataacgtcaccaatatgagcatatcagtgattaccagc 11796105
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 79.8 bits (40), Expect = 1e-11 Identities = 49/52 (94%) Strand = Plus / Minus Query: 61 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctct 112 ||||||||||||||||||| |||||||||||||| |||||||| |||||||| Sbjct: 5586 tttataatacttcaggagccaatgaaactattttagtaaaattgaattctct 5535 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 365 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 424 |||||||||||| |||| ||||||||| |||||||||||||| ||| || ||||| Sbjct: 5285 tcgaatacacattggttttttagctccactgttgtctgctacattcaaatacgtttgagg 5226 Query: 425 ttgaatcatatt 436 |||||||||||| Sbjct: 5225 ttgaatcatatt 5214
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 79.8 bits (40), Expect = 1e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 570 cgtatgggcattttactggccgctatggagatagctgctctagctacagtttcagatact 629 ||||| |||||||| |||| |||||||| ||||||||||||||||| | ||| | |||| Sbjct: 9279883 cgtataggcattttggtggcagctatggaaatagctgctctagctactgcttcgggtact 9279942 Query: 630 ccccccatttcataaagtat 649 || ||||||||||||||||| Sbjct: 9279943 ccacccatttcataaagtat 9279962 Score = 48.1 bits (24), Expect = 0.037 Identities = 36/40 (90%) Strand = Plus / Minus Query: 313 caataacatcaccaatacgagcatatcgctgattaccagc 352 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11874555 caataacgtcaccaatatgagcatatcagtgattaccagc 11874516
>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06, complete sequence Length = 126447 Score = 77.8 bits (39), Expect = 4e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 229 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 284 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 89363 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 89422 Query: 285 tggggcaatgcgtctttgattaca 308 | ||||| ||| |||||| ||||| Sbjct: 89423 ttgggcactgcttctttggttaca 89446
>dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_H01 Length = 121377 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 116 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 175 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 117502 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 117561 Query: 176 aaccgcagcattgtcatc 193 ||||| ||||||||||| Sbjct: 117562 aaccgttgcattgtcatc 117579
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 73.8 bits (37), Expect = 6e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 365 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 424 |||||||||||||||||||||||||||||| ||||||| ||| |||||| | ||||| Sbjct: 79713 tcgaatacacatcaattttcgagctccactgttgtctgttacttttaaataactttgagg 79772 Query: 425 ttgaatcat 433 ||||||||| Sbjct: 79773 ttgaatcat 79781 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 70 cttcaggagctaatgaaactattttggtaaaatt 103 ||||||||||||| || |||||||| |||||||| Sbjct: 79421 cttcaggagctaaagatactattttagtaaaatt 79454
>dbj|AB077439.1| Sophora alopecuroides plastid DNA, intron region Length = 569 Score = 71.9 bits (36), Expect = 3e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 406 catttaaaagggtctgaggttgaatcatattatttt 441 |||||||||||||||||||||||||||||||||||| Sbjct: 561 catttaaaagggtctgaggttgaatcatattatttt 526
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 69.9 bits (35), Expect = 1e-08 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 132 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 191 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 127299 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 127248 Query: 192 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 251 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 127247 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 127188 Query: 252 gctc 255 |||| Sbjct: 127187 gctc 127184 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 132 ccaaaaactcgagttccttttgggttgcctttttgat 168 ||||||||||||||||||||||| || |||| ||||| Sbjct: 126033 ccaaaaactcgagttccttttggatttccttcttgat 125997 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 132 ccaaaaactcgagttccttttgggttgcctttttgat 168 ||||||||||||||||||||||| || |||| ||||| Sbjct: 121959 ccaaaaactcgagttccttttggatttccttcttgat 121923
>gb|DQ069422.1| Ginkgo biloba ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 67.9 bits (34), Expect = 4e-08 Identities = 108/130 (83%), Gaps = 2/130 (1%) Strand = Plus / Minus Query: 65 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg-g 123 ||||||||| ||||| |||| ||||||||| || ||||| |||| ||||||||| ||| | Sbjct: 366 taatacttcgggagccaatggaactatttttgtgaaattaaattgtctcaattc-tcgag 308 Query: 124 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 183 ||| | |||||||||||||||||||| || || |||| |||||||| | ||| || | Sbjct: 307 caactgaaccaaaaactcgagttcctttcggatttccttcctgatcaatgacaactgctg 248 Query: 184 cattgtcatc 193 |||||||||| Sbjct: 247 cattgtcatc 238
>gb|DQ069416.1| Ginkgo biloba ribosomal protein L16 (rpl16) gene, partial cds; chloroplast Length = 414 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||||||||||||||| || |||||||| || |||||||||||||| Sbjct: 356 atagctgctctagctacagtctctgatactccgcctatttcataaagtat 307
>gb|M80799.1|VIRCPRPL Vigna unguiculata chloroplast ribosomal protein (L16 and L14) genes, 3' and 5' end respectively Length = 1268 Score = 65.9 bits (33), Expect = 2e-07 Identities = 116/143 (81%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 299 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 358 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 1258 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 1202 Query: 359 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 418 || || |||||||||||||| || || ||||| || || || |||||||| ||| | || Sbjct: 1201 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 1142 Query: 419 ctgaggttgaatcatattatttt 441 |||||||||||||||| ||||| Sbjct: 1141 ttgaggttgaatcatatcatttt 1119 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 921 tactccacccatttcataaagtat 898
>dbj|AB077337.1| Saussurea involucrata plastid DNA, intron region Length = 541 Score = 63.9 bits (32), Expect = 6e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 406 catttaaaagggtctgaggttgaatcatattatttt 441 |||||||||||||||||||||||||||||| ||||| Sbjct: 533 catttaaaagggtctgaggttgaatcatatgatttt 498
>emb|X03834.1|CHSOL16 Spirodela oligorhiza chloroplast gene for ribosomal protein L16 Length = 2064 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 402 gctacatttaaaagggtctgaggttgaatcatattatttt 441 |||||||| ||||||||||||||||||||||||| ||||| Sbjct: 2049 gctacattcaaaagggtctgaggttgaatcatatcatttt 2010 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||||||| ||| || |||||||| ||||| ||||| |||||||||||||| Sbjct: 1838 atagctgttctggcgacagtttcggataccccccctatttcataaagtat 1789
>gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast, complete genome Length = 161452 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 363 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 413 |||||||||||||| ||||| ||||| |||||||| || |||||||||||| Sbjct: 140455 actcgaatacacattaatttgcgagcaccactattatcagctacatttaaa 140505 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 69 acttcaggagctaatgaaactattttggtaaaatt 103 |||||||||||||| ||||| ||||| |||||||| Sbjct: 140167 acttcaggagctaaagaaacaatttttgtaaaatt 140201
>gb|DQ069418.1| Ranunculus macranthus ribosomal protein L16 (rpl16) gene, partial cds; chloroplast Length = 405 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 591 gctatggagatagctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||||| || |||||| |||| |||||| |||| |||||||| ||||||||||||||||| Sbjct: 362 gctatagaaatagcttctctggctacaatttctgatactccacccatttcataaagtat 304
>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1175_B01 Length = 96191 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 97 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 139 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 20850 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 20808
>gb|DQ069417.1| Nuphar advena ribosomal protein L16 (rpl16) gene, partial cds; chloroplast Length = 396 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||||| ||||| ||||| ||||| |||||||| ||||||||||||||||| Sbjct: 353 atagcggctctggctacggtttctgatactccgcccatttcataaagtat 304
>gb|DQ069415.1| Acorus americanus ribosomal protein L16 (rpl16) gene, partial cds; chloroplast Length = 390 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 ||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| Sbjct: 347 atagcggctctggctacagtttctgatactccacccatctcataaagtat 298
>dbj|AB096925.1| Papaver somniferum chloroplast rpl16 gene for ribosomal protein large subunit 16, partial cds Length = 493 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||| |||| |||||| |||| |||||||| ||||||||||||||||| Sbjct: 304 atagcttctctggctacaatttctgatactccacccatttcataaagtat 255
>dbj|AB096924.1| Papaver setigerum chloroplast rpl16 gene for ribosomal protein large subunit 16, partial cds Length = 493 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||| |||| |||||| |||| |||||||| ||||||||||||||||| Sbjct: 304 atagcttctctggctacaatttctgatactccacccatttcataaagtat 255
>dbj|AB096923.1| Papaver rhoeas chloroplast rpl16 gene for ribosomal protein large subunit 16, partial cds Length = 493 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||| |||| |||||| |||| |||||||| ||||||||||||||||| Sbjct: 304 atagcttctctggctacaatttctgatactccacccatttcataaagtat 255
>dbj|AB096922.1| Papaver pseudo-orientale chloroplast rpl16 gene for ribosomal protein large subunit 16, partial cds Length = 494 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||| |||| |||||| |||| |||||||| ||||||||||||||||| Sbjct: 304 atagcttctctggctacaatttctgatactccacccatttcataaagtat 255
>dbj|AB096921.1| Papaver orientale chloroplast rpl16 gene for ribosomal protein large subunit 16, partial cds Length = 494 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||| |||| |||||| |||| |||||||| ||||||||||||||||| Sbjct: 304 atagcttctctggctacaatttctgatactccacccatttcataaagtat 255
>dbj|AB096920.1| Papaver bracteatum chloroplast rpl16 gene for ribosomal protein large subunit 16, partial cds Length = 494 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 600 atagctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||| |||| |||||| |||| |||||||| ||||||||||||||||| Sbjct: 304 atagcttctctggctacaatttctgatactccacccatttcataaagtat 255
>gb|DQ291132.1| Oltmannsiellopsis viridis chloroplast, complete genome Length = 151933 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 369 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 428 |||||||| |||||||| ||||||||||| ||||| || |||| | || ||||||||| Sbjct: 16479 atacacattaattttcgtgctccactattatctgcgacgtttacatatgtttgaggttga 16420 Query: 429 atcatatta 437 ||||||||| Sbjct: 16419 atcatatta 16411
>dbj|AB077335.1| Allium altaicum plastid DNA, intron region Length = 551 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 406 catttaaaagggtctgaggttgaatcata 434 ||||||||||||||||||||||||||||| Sbjct: 543 catttaaaagggtctgaggttgaatcata 515 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 603 gctgctctagctacagtttcagatactccccccatttcataaagtat 649 |||||||| ||||||||||| || ||||| |||||||| |||||||| Sbjct: 205 gctgctctggctacagtttctgagactccgcccatttcgtaaagtat 251
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 366 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 413 |||||||||||||| || |||||||| ||||| |||||||||| |||| Sbjct: 76668 cgaatacacatcaacttgcgagctccgctattatctgctacatctaaa 76715
>tpg|BK000554.2| TPA: TPA_inf: Chlamydomonas reinhardtii chloroplast, complete genome Length = 203828 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 366 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 413 ||||||||||| |||| ||||| |||||||| ||||||||||||||| Sbjct: 28989 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 28942 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 229 ctttacatgtacgtacaattacagctcg 256 |||||| |||||||||||| |||||||| Sbjct: 29123 ctttacgtgtacgtacaataacagctcg 29096
>emb|X14062.1|CHCRL14 Chlamydomonas reinhardtii plasti gene for ribosomal protein L14 Length = 988 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 366 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 413 ||||||||||| |||| ||||| |||||||| ||||||||||||||| Sbjct: 588 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 541 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 229 ctttacatgtacgtacaattacagctcg 256 |||||| |||||||||||| |||||||| Sbjct: 722 ctttacgtgtacgtacaataacagctcg 695
>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0560B06 Length = 161720 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 614 tacagtttcagatactccccccatttcataaagta 648 |||||||||||||||||| ||| |||||||||||| Sbjct: 147642 tacagtttcagatactccgcccttttcataaagta 147608
>gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 10P20, Lemont Strain, Complete Sequence, complete sequence Length = 105198 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 614 tacagtttcagatactccccccatttcataaagta 648 |||||||||||||||||| ||| |||||||||||| Sbjct: 85252 tacagtttcagatactccgcccttttcataaagta 85218
>gb|M30487.1|CPACYRP Cyanophora paradoxa ribosomal protein l22 (rpl22) gene, partial cds; ribosomal protein s3 (rps3), ribosomal protein l16 (rpl16), ribosomal protein l7 (rpl7), ribosomal protein l14 (rpl14), ribosomal protein l5 (rpl5), ribosomal protein s8 (rps8), ribosomal protein l6 (rpl6), ribosomal protein l18 (rpl18), ribosomal protein s5 (rps5), and ribosomal protein secY (secY) genes, complete cds; and ORF gene, partial cds Length = 6468 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 363 actcgaatacacatcaattttcgagctccactatt 397 |||||||||||||| ||||| |||||||||||||| Sbjct: 1744 actcgaatacacattaatttacgagctccactatt 1710 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 63 tataatacttcaggagctaatgaaactattttggtaaaatt 103 ||||||||||| |||||||| |||| ||||| |||||||| Sbjct: 2041 tataatacttccggagctaaagaaataatttttgtaaaatt 2001 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 305 tacagcaacaataacatcaccaatacgagcata 337 |||||| ||||| ||||||||||| |||||||| Sbjct: 1799 tacagcgacaattacatcaccaattcgagcata 1767
>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0043B10 Length = 167399 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 614 tacagtttcagatactccccccatttcataaagta 648 |||||||||||||||||| ||| |||||||||||| Sbjct: 103556 tacagtttcagatactccgcccttttcataaagta 103522
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 88 ctattttggtaaaattcaattctctcaattc 118 ||||||| ||||||||||||||||||||||| Sbjct: 45211 ctattttagtaaaattcaattctctcaattc 45181
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 363 actcgaatacacatcaattttcgagctccactatt 397 |||||||||||||| ||||| |||||||||||||| Sbjct: 52478 actcgaatacacattaatttacgagctccactatt 52512 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 305 tacagcaacaataacatcaccaatacgagcata 337 |||||| ||||| ||||||||||| |||||||| Sbjct: 52423 tacagcgacaattacatcaccaattcgagcata 52455 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 63 tataatacttcaggagctaatgaaactattttggtaaaatt 103 ||||||||||| |||||||| |||| ||||| |||||||| Sbjct: 52181 tataatacttccggagctaaagaaataatttttgtaaaatt 52221
>gb|AF050665.1|AF050665 Spirogyra maxima tRNA-Ile gene, complete sequence; and ribosomal protein L23 (rpl23), ribosomal protein L2 (rpl2), ribosomal protein S19 (rps19), ribosomal protein L22 (rpl22), ribosomal protein S3 (rps3), ribosomal protein L16 (rpl16), ribosomal protein L14 (rpl14), ribosomal protein S8 (rps8), initiation factor A (infA), ribosomal protein L36 (rpl36), ribosomal protein S11 (rps11), and RNA polymerase alpha subunit (rpoA) genes, complete cds, chloroplast genes for chloroplast products Length = 8794 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 69 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 118 |||||||||||||| || ||||| || |||||||| |||||||| ||||| Sbjct: 5584 acttcaggagctaaagatactatcttagtaaaatttaattctcttaattc 5535 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 366 cgaatacacatcaattttcgagctccact 394 ||||||||||| ||||| ||||||||||| Sbjct: 5290 cgaatacacattaatttacgagctccact 5262
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 369 atacacatcaattttcgagctccactattgtctgctacatt 409 |||||||||||||| ||||| || ||||||||||| ||||| Sbjct: 879333 atacacatcaatttacgagcgccgctattgtctgcgacatt 879293
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 369 atacacatcaattttcgagctccactattgtctgctacatt 409 |||||||||||||| ||||| || ||||||||||| ||||| Sbjct: 5047012 atacacatcaatttacgagcgccgctattgtctgcgacatt 5047052
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 48.1 bits (24), Expect = 0.037 Identities = 45/52 (86%) Strand = Plus / Minus Query: 382 ttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcat 433 |||||||||||||||| || |||||||||||| | |||||||||||||| Sbjct: 94493 ttcgagctccactattatcggctacatttaaataagattgaggttgaatcat 94442
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 48.1 bits (24), Expect = 0.037 Identities = 36/40 (90%) Strand = Plus / Plus Query: 313 caataacatcaccaatacgagcatatcgctgattaccagc 352 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 98741 caataacgtcaccaatatgagcatatcagtgattaccagc 98780
>dbj|AB077333.1| Ferula feruloides plastid DNA, intron region Length = 531 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 406 catttaaaagggtctgaggttgaa 429 |||||||||||||||||||||||| Sbjct: 523 catttaaaagggtctgaggttgaa 500
>ref|NM_128441.3| Arabidopsis thaliana structural constituent of ribosome AT2G28820 mRNA, complete cds Length = 1156 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 303 attacagcaacaataacatcaccaatacgagcata 337 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 999 attacggcaacaacaacatcaccaatatgagcata 965
>emb|AL359081.10| Human DNA sequence from clone RP11-541F9 on chromosome 1, complete sequence Length = 109288 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 82 atgaaactattttggtaaaattcaatt 108 |||||||||||||||||| |||||||| Sbjct: 91500 atgaaactattttggtaacattcaatt 91474
>gb|AC005727.3| Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete sequence Length = 107097 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 303 attacagcaacaataacatcaccaatacgagcata 337 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 38089 attacggcaacaacaacatcaccaatatgagcata 38123
>gb|AY219111.2| Arabidopsis thaliana hypothetical protein (At2g28820/F8N16.11) mRNA, complete cds Length = 1179 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 303 attacagcaacaataacatcaccaatacgagcata 337 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 1002 attacggcaacaacaacatcaccaatatgagcata 968
>dbj|AP000606.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTO24 Length = 82360 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 432 atattattttgatttcaatttgttatt 458 |||||||||||||||||| |||||||| Sbjct: 13778 atattattttgatttcaaattgttatt 13752
>dbj|AB028608.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K20I9 Length = 43500 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 67 atacttcaggagctaatgaaactattt 93 |||| |||||||||||||||||||||| Sbjct: 22874 atacctcaggagctaatgaaactattt 22900
>gb|AC157473.1| Medicago truncatula chromosome 7 BAC clone mte1-11e4, complete sequence Length = 125310 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 407 atttaaaagggtctgaggttgaa 429 ||||||||||||||||||||||| Sbjct: 65424 atttaaaagggtctgaggttgaa 65402
>gb|AC132335.3| Mus musculus BAC clone RP24-230C24 from chromosome 10, complete sequence Length = 180642 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 468 aaggatgaaagaaatattgtctttcc 493 |||||||||||||||||| ||||||| Sbjct: 116209 aaggatgaaagaaatattttctttcc 116234
>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20 Length = 91193 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 434 attattttgatttcaatttgtt 455 |||||||||||||||||||||| Sbjct: 90746 attattttgatttcaatttgtt 90725
>dbj|AB077440.1| Incarvillea potaninii plastid DNA, intron region Length = 536 Score = 44.1 bits (22), Expect = 0.57 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 406 catttaaaagggtctgaggttgaatcatat 435 |||||||||||| ||||||||||||||||| Sbjct: 528 catttaaaaggg-ctgaggttgaatcatat 500
>dbj|AB077334.1| Zygophyllum pterocarpum plastid DNA, intron region Length = 553 Score = 44.1 bits (22), Expect = 0.57 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 406 catttaaaagggtctgaggttgaatcatat 435 |||||||||||| ||||||||||||||||| Sbjct: 545 catttaaaaggg-ctgaggttgaatcatat 517
>gb|AC166165.3| Mus musculus BAC clone RP23-381I17 from chromosome 10, complete sequence Length = 217425 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 468 aaggatgaaagaaatattgtctttcc 493 |||||||||||||||||| ||||||| Sbjct: 184750 aaggatgaaagaaatattttctttcc 184775
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 ccttttgggttgcctttttga 167 ||||||||||||||||||||| Sbjct: 1617545 ccttttgggttgcctttttga 1617565 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 62 ttataatacttcaggagctaatgaaactatttt 94 |||||| ||||||||||||| |||||| ||||| Sbjct: 352059 ttataaaacttcaggagctagtgaaacgatttt 352027
>emb|CT009479.4| M.truncatula DNA sequence from clone MTH2-164E3 on chromosome 3, complete sequence Length = 133351 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 457 tttcaatgcaaaaggatgaaagaaa 481 ||||||| ||||||||||||||||| Sbjct: 58265 tttcaatacaaaaggatgaaagaaa 58241
>gb|AC132083.3| Mus musculus BAC clone RP24-540G23 from chromosome 5, complete sequence Length = 158764 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 acaatctactaatattaattc 34 ||||||||||||||||||||| Sbjct: 90572 acaatctactaatattaattc 90592
>emb|CR753838.10| Zebrafish DNA sequence from clone DKEY-189H5 in linkage group 5, complete sequence Length = 188660 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 atgaaactattttggtaaaat 102 ||||||||||||||||||||| Sbjct: 13532 atgaaactattttggtaaaat 13552
>emb|AL606489.26| Human DNA sequence from clone RP11-739N20 on chromosome 1 Contains the 5' end of the gene for phosphoinositol 3-phosphate-binding protein-3 (PEPP3), two novel genes, the PPP1R15B gene for protein phosphatase 1, regulatory (inhibitor) subunit 15B, the PIK3C2B gene for phosphoinositide-3-kinase, class 2, beta polypeptide, a small nuclear ribonucleoprotein polypeptide F (SNRPF) pseudogene and three CpG islands, complete sequence Length = 167079 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 485 tgtctttccagaaagaaaaac 505 ||||||||||||||||||||| Sbjct: 87284 tgtctttccagaaagaaaaac 87304
>ref|XM_503361.1| Yarrowia lipolytica CLIB122, YALI0E00154g predicted mRNA Length = 2382 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 acagcaacaataacatcacca 326 ||||||||||||||||||||| Sbjct: 263 acagcaacaataacatcacca 283
>emb|AL359821.11| Human DNA sequence from clone RP11-175G14 on chromosome 1 Contains part of the NEGR1 gene for neuronal growth regulator 1 and part of a novel gene, complete sequence Length = 117951 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 474 gaaagaaatattgtctttccagaaa 498 |||||||||||||||||| |||||| Sbjct: 43956 gaaagaaatattgtctttacagaaa 43980
>emb|AL355355.25| Human DNA sequence from clone RP11-730A19 on chromosome 10 Contains the 5' end of a novel gene (DKFZP761F241) (FLJ20925 FLJ38473), a ribosomal protein L5 (RPL5) pseudogene, the OPTN gene for optineurin, a small nuclear ribonucleoprotein polypeptide G (SNRPG) pseudogene, a pseudogene similar to part of COX10 homolog, cytochrome c oxidase assembly protein heme A: farnesyltransferase (yeast) (COX10), a novel pseudogene (FLJ10648 KIAA1525), a ribosomal protein L36A (RPL36A) pseudogene, the 5' end of the MCM10 gene for MCM10 minichromosome maintenance deficient 10 (S. cerevisiae), a pseudogene similar to part of chromodomain protein Y chromosome 1 (CDY1) and two CpG islands, complete sequence Length = 196203 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 atttcaatttgttatttcaat 463 ||||||||||||||||||||| Sbjct: 148025 atttcaatttgttatttcaat 148045
>emb|AL122003.17|HSJ659I19 Human DNA sequence from clone RP4-659I19 on chromosome 1q42.11-42.3 Contains a chromosome 9 open reading frame 78 (C9orf78) pseudogene, a novel gene (MGC13186), the 3' end of a novel gene (FLJ11383) and a CpG island, complete sequence Length = 155065 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 aatgaaactattttggtaaaa 101 ||||||||||||||||||||| Sbjct: 66463 aatgaaactattttggtaaaa 66483
>emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 1/7 Length = 340806 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 62 ttataatacttcaggagctaatgaaactatttt 94 ||||||||||||||| || |||||||| ||||| Sbjct: 109779 ttataatacttcaggtgccaatgaaacgatttt 109811
>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04, complete sequence Length = 136713 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 444 tttcaatttgttatttcaatgcaaa 468 ||||||||||| ||||||||||||| Sbjct: 83648 tttcaatttgtaatttcaatgcaaa 83672
>gb|AY835431.1| Pseudendoclonium akinetum chloroplast, complete genome Length = 195867 Score = 42.1 bits (21), Expect = 2.3 Identities = 57/69 (82%) Strand = Plus / Minus Query: 366 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 425 ||||| |||||||||||| || || ||||| || ||||||||||||| || |||||| Sbjct: 31433 cgaatgcacatcaatttttttgcaccgctattatcagctacatttaaaatagtttgaggt 31374 Query: 426 tgaatcata 434 |||||||| Sbjct: 31373 cgaatcata 31365
>gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complete sequence Length = 178378 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 467 aaaggatgaaagaaatattgt 487 ||||||||||||||||||||| Sbjct: 10896 aaaggatgaaagaaatattgt 10876
>dbj|AK034773.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430035O09 product:RAD17 homolog (S. pombe), full insert sequence Length = 2615 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 435 ttattttgatttcaatttgtt 455 ||||||||||||||||||||| Sbjct: 1994 ttattttgatttcaatttgtt 2014
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 62 ttataatacttcaggagctaatgaaactatttt 94 ||||||||||||||| || |||||||| ||||| Sbjct: 156967 ttataatacttcaggtgccaatgaaacgatttt 156935 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 436 tattttgatttcaatttgttattt 459 ||||||||||| |||||||||||| Sbjct: 1406237 tattttgattttaatttgttattt 1406214
>gb|AC109358.3| Homo sapiens BAC clone RP11-648D16 from 2, complete sequence Length = 49153 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 attttggtaaaattcaattct 110 ||||||||||||||||||||| Sbjct: 27739 attttggtaaaattcaattct 27719
>gb|AC073885.5| Homo sapiens BAC clone RP11-70L16 from 2, complete sequence Length = 120379 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 taaaattcaattctctcaatt 117 ||||||||||||||||||||| Sbjct: 93691 taaaattcaattctctcaatt 93671
>gb|AF283525.1|AF283519S7 Homo sapiens FIP2 gene, exons 11, 12 and 13 Length = 5047 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 atttcaatttgttatttcaat 463 ||||||||||||||||||||| Sbjct: 151 atttcaatttgttatttcaat 171
>dbj|AK120872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026M09, full insert sequence Length = 5675 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 444 tttcaatttgttatttcaatgcaaa 468 ||||||||||| ||||||||||||| Sbjct: 2487 tttcaatttgtaatttcaatgcaaa 2511
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 62 ttataatacttcaggagctaatgaaactatttt 94 ||||||||||||||| || |||||||| ||||| Sbjct: 1801391 ttataatacttcaggtgccaatgaaacgatttt 1801423
>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence Length = 240928 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 atgaaactattttggtaaaat 102 ||||||||||||||||||||| Sbjct: 106739 atgaaactattttggtaaaat 106759
>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome Length = 191028 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 366 cgaatacacatcaattttcgagctccactattgtctgctac 406 ||||||||||| | ||||| ||| |||||||| |||||||| Sbjct: 100999 cgaatacacattatttttctagcgccactattatctgctac 101039
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 acagcaacaataacatcacca 326 ||||||||||||||||||||| Sbjct: 6095 acagcaacaataacatcacca 6075
>gb|AC165159.2| Mus musculus BAC clone RP23-234N1 from chromosome 13, complete sequence Length = 215158 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 435 ttattttgatttcaatttgtt 455 ||||||||||||||||||||| Sbjct: 79695 ttattttgatttcaatttgtt 79675
>ref|XM_639569.1| Dictyostelium discoideum histidine kinase (DDB0185039), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 cagcaacaataacatcacca 326 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_639498.1| Dictyostelium discoideum histidine kinase DhkI (DDB0217151), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 cagcaacaataacatcacca 326 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_634860.1| Dictyostelium discoideum hypothetical protein (DDB0186277), partial mRNA Length = 4602 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 436 tattttgatttcaatttgttattt 459 ||||||||||||||||| |||||| Sbjct: 413 tattttgatttcaattttttattt 390
>gb|AC167973.4| Mus musculus BAC clone RP23-453B4 from chromosome 9, complete sequence Length = 182190 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 tctttccagaaagaaaaacc 506 |||||||||||||||||||| Sbjct: 127972 tctttccagaaagaaaaacc 127953
>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188027 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tactagtatttataatactt 72 |||||||||||||||||||| Sbjct: 140243 tactagtatttataatactt 140224
>gb|AY681321.1| Agelena orientalis toxin-like structure Agel_24 precursor, mRNA, complete cds Length = 378 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 attttgatttcaatttgtta 456 |||||||||||||||||||| Sbjct: 245 attttgatttcaatttgtta 264
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 tctttgattacagcaacaat 316 |||||||||||||||||||| Sbjct: 129128 tctttgattacagcaacaat 129147
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 tattgtctgctacatttaaa 413 |||||||||||||||||||| Sbjct: 112737 tattgtctgctacatttaaa 112756
>emb|CT025560.9| Mouse DNA sequence from clone RP23-432N22 on chromosome 16, complete sequence Length = 212903 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 tctgctacatttaaaagggt 418 |||||||||||||||||||| Sbjct: 68129 tctgctacatttaaaagggt 68148
>emb|CR450788.7| Zebrafish DNA sequence from clone DKEY-15P23 in linkage group 12, complete sequence Length = 115480 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 gtcttcgcatttgaattctt 231 |||||||||||||||||||| Sbjct: 71969 gtcttcgcatttgaattctt 71950
>emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in linkage group 6, complete sequence Length = 168549 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tgattacagcaacaataaca 320 |||||||||||||||||||| Sbjct: 82901 tgattacagcaacaataaca 82920
>emb|Z76735.1|HS246O8 Human DNA sequence from clone RP1-246O8 on chromosome X, complete sequence Length = 175745 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 attaattctttgatctaaat 46 |||||||||||||||||||| Sbjct: 99502 attaattctttgatctaaat 99521
>emb|AL603882.13| Human DNA sequence from clone RP11-630I5 on chromosome 1 Contains the 5' end of the gene for microtubule associated testis specific serine/threonine protein kinase (MAST205), a ribosomal protein L6 (RPL6) pseudogene and a CpG island, complete sequence Length = 78745 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 aaatattgtctttccagaaa 498 |||||||||||||||||||| Sbjct: 30144 aaatattgtctttccagaaa 30163
>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence Length = 204620 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 tctttccagaaagaaaaacc 506 |||||||||||||||||||| Sbjct: 21328 tctttccagaaagaaaaacc 21309
>emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome; segment 7/7 Length = 318136 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tcaatgcaaaaggatgaaag 478 |||||||||||||||||||| Sbjct: 72832 tcaatgcaaaaggatgaaag 72851
>gb|AC159379.14| Mus musculus 10 BAC RP23-210F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226172 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 462 atgcaaaaggatgaaagaaatatt 485 ||||||||||| |||||||||||| Sbjct: 40830 atgcaaaaggaagaaagaaatatt 40853
>emb|AL627283.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 19/20 Length = 249050 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ttcctcggcaatcgcgccaa 135 |||||||||||||||||||| Sbjct: 190554 ttcctcggcaatcgcgccaa 190535
>gb|AC156991.9| Mus musculus chromosome 8, clone RP23-297F23, complete sequence Length = 164343 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 aagaaatattgtctttccag 495 |||||||||||||||||||| Sbjct: 135640 aagaaatattgtctttccag 135659
>emb|BX510930.15| Zebrafish DNA sequence from clone DKEY-91L18 in linkage group 14, complete sequence Length = 95848 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 aatcatattattttgatttc 447 |||||||||||||||||||| Sbjct: 64510 aatcatattattttgatttc 64491
>gb|CP000268.1| Rhodoferax ferrireducens DSM 15236 plasmid1, complete sequence Length = 257447 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 accaatacgagcatatcgct 342 |||||||||||||||||||| Sbjct: 204840 accaatacgagcatatcgct 204859
>gb|AC108100.2| Homo sapiens chromosome 5 clone RP11-125A21, complete sequence Length = 85231 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 atttcaatttgttatttcaa 462 |||||||||||||||||||| Sbjct: 32554 atttcaatttgttatttcaa 32573
>gb|AC010406.7| Homo sapiens chromosome 5 clone CTD-2154H6, complete sequence Length = 95089 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 catttgaattctttacatgt 238 |||||||||||||||||||| Sbjct: 65739 catttgaattctttacatgt 65720
>emb|BX664600.7| Zebrafish DNA sequence from clone CH211-112M13, complete sequence Length = 167489 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 attaattctttgatctaaat 46 |||||||||||||||||||| Sbjct: 80174 attaattctttgatctaaat 80193
>gb|AC159542.8| Mus musculus 10 BAC RP23-137B10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198525 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 462 atgcaaaaggatgaaagaaatatt 485 ||||||||||| |||||||||||| Sbjct: 197474 atgcaaaaggaagaaagaaatatt 197497
>gb|AC136037.2| Rattus norvegicus X BAC CH230-378N18 (Children's Hospital Oakland Research Institute) complete sequence Length = 98442 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 169 caattataaccgcagcattgtcat 192 ||||||||||| |||||||||||| Sbjct: 22762 caattataacctcagcattgtcat 22785
>gb|AC087254.2| Danio rerio clone 91J1, complete sequence Length = 77731 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 attaattctttgatctaaat 46 |||||||||||||||||||| Sbjct: 59268 attaattctttgatctaaat 59249
>gb|AF362371.1|AF362371 Dictyostelium discoideum histidine kinase DhkI (dhkI) gene, complete cds Length = 6074 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 cagcaacaataacatcacca 326 |||||||||||||||||||| Sbjct: 1666 cagcaacaataacatcacca 1685
>gb|AC103567.2| Caenorhabditis elegans cosmid Y51F10, complete sequence Length = 89249 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 taatgaaactattttggtaaaatt 103 |||||||||| ||||||||||||| Sbjct: 60315 taatgaaacttttttggtaaaatt 60338
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 40.1 bits (20), Expect = 8.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 366 cgaatacacatcaattttcgagctccactattgtctgctacatt 409 ||||||||||| | |||| ||| |||||||| ||||||||||| Sbjct: 15771 cgaatacacattatttttttagcgccactattatctgctacatt 15814
>dbj|AB199893.1| Angelica acutiloba var. iwatensis chloroplast rpl16 gene for ribosomal protein large subunit 16, partial cds, and rpl16-rpl14 spacer Length = 463 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 278 tactccacccatttcataaagtat 255
>dbj|AB199892.1| Angelica acutiloba var. sugiyamae chloroplast rpl16 gene for ribosomal protein large subunit 16, partial cds, and rpl16-rpl14 spacer Length = 463 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 278 tactccacccatttcataaagtat 255
>dbj|AB199891.1| Angelica acutiloba chloroplast rpl16 gene for ribosomal protein large subunit 16, partial cds, and rpl16-rpl14 spacer Length = 463 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 626 tactccccccatttcataaagtat 649 |||||| ||||||||||||||||| Sbjct: 278 tactccacccatttcataaagtat 255
>gb|AC116330.2| Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence Length = 132254 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cagcaacaataacatcacca 326 |||||||||||||||||||| Sbjct: 42174 cagcaacaataacatcacca 42155
>gb|AC010423.8| Homo sapiens chromosome 5 clone CTD-2193G5, complete sequence Length = 183787 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 catttgaattctttacatgt 238 |||||||||||||||||||| Sbjct: 143582 catttgaattctttacatgt 143601
>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695H10 Length = 136883 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 acaatctactaatattaatt 33 |||||||||||||||||||| Sbjct: 34655 acaatctactaatattaatt 34674
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 acaatctactaatattaatt 33 |||||||||||||||||||| Sbjct: 159381 acaatctactaatattaatt 159400
>gb|AE016754.1| Mus musculus chromosome 10 high-growth region, section 2 of 2 of the complete sequence Length = 303688 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 atgcaaaaggatgaaagaaatatt 485 ||||||||||| |||||||||||| Sbjct: 256147 atgcaaaaggaagaaagaaatatt 256124 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,945,393 Number of Sequences: 3902068 Number of extensions: 6945393 Number of successful extensions: 145005 Number of sequences better than 10.0: 260 Number of HSP's better than 10.0 without gapping: 279 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 141732 Number of HSP's gapped (non-prelim): 3133 length of query: 652 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 629 effective length of database: 17,143,297,704 effective search space: 10783134255816 effective search space used: 10783134255816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)