>AER_ECOLI (P50466) Aerotaxis receptor|
          Length = 506

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 495 ELMDQFGNVWHHTRVRKYLTADDWSPIEAKGRPWYGLLGLLRKYPEHFVINTKS 334
           EL  Q  N+  H  + K   AD W  ++ KG PW G++   RK  +H+ +   +
Sbjct: 47  ELQGQPHNMVRHPDMPKAAFADMWFTLK-KGEPWSGIVKNRRKNGDHYWVRANA 99

>RRN5_YEAST (Q02983) RNA polymerase I-specific transcription initiation factor|
           RRN5
          Length = 363

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 389 PYHGLPLASMGDQS---SAVRYFRTLVWCHTLPNWSISSV 499
           P H LPL+    Q+      RY RTL+WC  L   +  SV
Sbjct: 188 PRHALPLSRSATQTLERCVSRYTRTLLWCTALAGMASRSV 227

>MED7_YEAST (Q08278) RNA polymerase II mediator complex subunit 7 (RNA|
           polymerase II transcriptional regulation mediator 7)
          Length = 222

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 604 PSHSSNGRERSRVICCDCVI*PLWPRRMDAYENTPYRAYGPVWQ 473
           P++S+ G E       D +I P  P+      N  YRA+G +WQ
Sbjct: 47  PNNSNGGSEEEITCALDYLIPPPMPK------NQQYRAFGSIWQ 84

>ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1424

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 163 SGHHSTFQTRTNRPTDG-SRMRNKTQARL*RQPRLAGP*SSLGEQGNQRDELRD 321
           SGHH  F    +  +DG S  ++ T +R    PR   P    GEQ ++RDE RD
Sbjct: 422 SGHHHHFFHSAHHESDGKSNSKSHTSSRS-HTPRNLTP-QVTGEQPHERDEKRD 473

>SYV_STAS1 (Q49Y96) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 876

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 449 RTLVWCHTLPNWSISSVWSVFIGIHSPGPQRSDNTVATDDT--TSFSS 586
           R L W H +P W       +F+G H   P+  +N V  +D   T FSS
Sbjct: 405 RQLWWGHQIPAWYHKETGEIFVGEHE--PEDIENWVQDEDVLDTWFSS 450


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,494,691
Number of Sequences: 219361
Number of extensions: 1847654
Number of successful extensions: 5320
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5320
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)