ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2i04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COX10_YARLI (Q6C0L2) Protoheme IX farnesyltransferase, mitochond... 28 7.9
2ALEUL_ARATH (Q8RWQ9) Thiol protease aleurain-like precursor (EC ... 28 7.9

>COX10_YARLI (Q6C0L2) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 471

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 48  NPNIGSLAGLNMRGLSFQLCI-IQFASI--YWFLFNSFANN*LID*WAF 185
           NP + +  GL    L F LC+ + + ++  +WF+ +S   N  +  WAF
Sbjct: 355 NPGLNARVGLRYALLMFPLCVGLSYYNVTDWWFVLDSSVLNAWMAWWAF 403



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>ALEUL_ARATH (Q8RWQ9) Thiol protease aleurain-like precursor (EC 3.4.22.16)|
          Length = 358

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 54  NIGSLAGLNMRGLSFQLCIIQFASIYWFLFNSF 152
           N+  +   N +GLS++L + QFA + W  F  +
Sbjct: 86  NLDLIRSTNKKGLSYKLSLNQFADLTWQEFQRY 118


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,582,991
Number of Sequences: 219361
Number of extensions: 639294
Number of successful extensions: 1300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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