ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2i04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467507.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.060
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.060
3dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.060
4dbj|AK108806.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.060
5gb|AC183269.3| Pan troglodytes BAC clone CH251-685E7 from chromo... 42 0.93
6gb|AF228730.8| Homo sapiens chromosome 8 clones SCb-332a23, CTB-... 42 0.93
7gb|AC092902.10| Homo sapiens 3 BAC RP11-379B18 (Roswell Park Can... 42 0.93
8gb|AC073886.4| Homo sapiens BAC clone RP11-101N13 from 7, comple... 42 0.93
9emb|AL691517.20| Human DNA sequence from clone XXyac-12DB5 on ch... 42 0.93
10emb|AL513533.15| Human DNA sequence from clone RP11-341B24 on ch... 42 0.93
11emb|AL359972.10| Human DNA sequence from clone RP1-105K17 on chr... 42 0.93
12gb|AC130888.2| Homo sapiens 3 BAC RP11-77P16 (Roswell Park Cance... 42 0.93
13gb|AC116562.6| Homo sapiens BAC clone RP11-489M13 from 4, comple... 42 0.93
14dbj|AK124624.1| Homo sapiens cDNA FLJ42633 fis, clone BRACE30205... 42 0.93
15gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cance... 42 0.93
16gb|AC105271.2| Homo sapiens chromosome 1 clone RP4-650F12, compl... 42 0.93
17gb|AC034203.7| Homo sapiens chromosome 3 clone CTB-182H21, compl... 42 0.93
18gb|AC091856.3| Homo sapiens chromosome 5 clone CTD-2315B5, compl... 42 0.93
19gb|AC025887.4|AC025887 Homo sapiens chromosome , clone RP11-386P... 42 0.93
20gb|AC133041.3| Homo sapiens 3 BAC CTD-2026G6 (Cal Tech Human BAC... 42 0.93
21gb|AC099740.2| Takifugu rubripes clone 216J3, complete sequence 42 0.93
22gb|AC098806.3| Takifugu rubripes clone 208D11, complete sequence 42 0.93
23gb|AC104648.2| Homo sapiens BAC clone RP11-45D4 from 2, complete... 42 0.93
24gb|AC106809.2| Homo sapiens chromosome 5 clone RP11-53K6, comple... 42 0.93
25emb|CR352232.20| Zebrafish DNA sequence from clone DKEY-3L8 in l... 42 0.93
26dbj|AP003498.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 0.93
27gb|AC113989.6| Mus musculus chromosome 3, clone RP24-130I14, com... 40 3.7
28gb|AC139060.5| Mus musculus chromosome 16, clone RP23-58G17, com... 40 3.7
29gb|AC140189.3| Mus musculus BAC clone RP24-370G18 from chromosom... 40 3.7
30gb|AC121833.3| Mus musculus BAC clone RP24-69C16 from chromosome... 40 3.7
31gb|AC007035.3| Homo sapiens BAC clone RP11-104I19 from 7, comple... 40 3.7
32emb|AL356113.8| Human DNA sequence from clone RP11-429A24 on chr... 40 3.7
33emb|AL355794.5| Human DNA sequence from clone RP4-781D12 on chro... 40 3.7
34emb|AL049732.11|HSDA14C6 Human DNA sequence from clone RP6-14C6 ... 40 3.7
35emb|AL627411.21| Mouse DNA sequence from clone RP23-346H6 on chr... 40 3.7
36gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, comple... 40 3.7
37gb|AC109928.4| Homo sapiens BAC clone RP11-755F21 from 4, comple... 40 3.7
38gb|AC093694.4| Homo sapiens BAC clone RP11-769N3 from 4, complet... 40 3.7
39gb|AC073648.7| Homo sapiens BAC clone RP11-747H12 from 4, comple... 40 3.7
40ref|XM_679317.1| PREDICTED: Danio rerio similar to putative prot... 40 3.7
41gb|AC005815.1| Homo sapiens chromosome 22 clone 239d10 map 22q11... 40 3.7
42emb|BX284619.11| Zebrafish DNA sequence from clone DKEY-251E24 i... 40 3.7
43gb|AC155910.6| Mus musculus 10 BAC RP24-492P8 (Roswell Park Canc... 40 3.7
44emb|AL935264.12| Mouse DNA sequence from clone RP23-118A9 on chr... 40 3.7
45gb|AC151922.2| Phaeodactylum tricornutum clone JGIAHOK-5A1, comp... 40 3.7 
>ref|XM_467507.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2595

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 194  gcagaaaagaacatccccttggagaaa 220
            ||||||||||||||||||| |||||||
Sbjct: 2411 gcagaaaagaacatcccctgggagaaa 2437
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 194      gcagaaaagaacatccccttggagaaa 220
                ||||||||||||||||||| |||||||
Sbjct: 29892614 gcagaaaagaacatcccctgggagaaa 29892640
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>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_D06
          Length = 112768

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 194   gcagaaaagaacatccccttggagaaa 220
             ||||||||||||||||||| |||||||
Sbjct: 49579 gcagaaaagaacatcccctgggagaaa 49605
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>dbj|AK108806.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-D02, full
           insert sequence
          Length = 1407

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 194 gcagaaaagaacatccccttggagaaa 220
           ||||||||||||||||||| |||||||
Sbjct: 842 gcagaaaagaacatcccctgggagaaa 868
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>gb|AC183269.3| Pan troglodytes BAC clone CH251-685E7 from chromosome 3, complete
              sequence
          Length = 220398

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 165    ctaattgattgatgggcattt 185
              |||||||||||||||||||||
Sbjct: 199006 ctaattgattgatgggcattt 199026
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>gb|AF228730.8| Homo sapiens chromosome 8 clones SCb-332a23, CTB-415D8 map p23.1,
             complete sequences
          Length = 295854

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   ctaattgattgatgggcattt 185
             |||||||||||||||||||||
Sbjct: 90959 ctaattgattgatgggcattt 90939
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>gb|AC092902.10| Homo sapiens 3 BAC RP11-379B18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 124071

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   ctaattgattgatgggcattt 185
             |||||||||||||||||||||
Sbjct: 43754 ctaattgattgatgggcattt 43734
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>gb|AC073886.4| Homo sapiens BAC clone RP11-101N13 from 7, complete sequence
          Length = 112568

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 165   ctaattgattgatgggcattt 185
             |||||||||||||||||||||
Sbjct: 20171 ctaattgattgatgggcattt 20191
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>emb|AL691517.20| Human DNA sequence from clone XXyac-12DB5 on chromosome X Contains a
             pyruvate dehydrogenase kinase, isoenzyme 1 (PDK1)
             pseudogene, complete sequence
          Length = 174181

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 165   ctaattgattgatgggcattt 185
             |||||||||||||||||||||
Sbjct: 17141 ctaattgattgatgggcattt 17161
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>emb|AL513533.15| Human DNA sequence from clone RP11-341B24 on chromosome 10 Contains the
              3' end of the LIPA gene for lipase A lysosomal acid
              cholesterol esterase (Wolman disease), a novel zinc finger
              pseudogene and the CH25 gene for cholesterol
              25-hydroxylase, complete sequence
          Length = 148151

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 165    ctaattgattgatgggcattt 185
              |||||||||||||||||||||
Sbjct: 115072 ctaattgattgatgggcattt 115092
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>emb|AL359972.10| Human DNA sequence from clone RP1-105K17 on chromosome Xq13.2-21.1,
             complete sequence
          Length = 80630

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   ctaattgattgatgggcattt 185
             |||||||||||||||||||||
Sbjct: 48327 ctaattgattgatgggcattt 48307
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>gb|AC130888.2| Homo sapiens 3 BAC RP11-77P16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 114687

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 165    ctaattgattgatgggcattt 185
              |||||||||||||||||||||
Sbjct: 103000 ctaattgattgatgggcattt 103020
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>gb|AC116562.6| Homo sapiens BAC clone RP11-489M13 from 4, complete sequence
          Length = 174826

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 165    ctaattgattgatgggcattt 185
              |||||||||||||||||||||
Sbjct: 121154 ctaattgattgatgggcattt 121174
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>dbj|AK124624.1| Homo sapiens cDNA FLJ42633 fis, clone BRACE3020594, moderately
           similar to Homo sapiens cytokine receptor-like factor 2
           (CRLF2)
          Length = 4161

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 165 ctaattgattgatgggcattt 185
           |||||||||||||||||||||
Sbjct: 56  ctaattgattgatgggcattt 76
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>gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152599

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 165    ctaattgattgatgggcattt 185
              |||||||||||||||||||||
Sbjct: 149350 ctaattgattgatgggcattt 149370
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>gb|AC105271.2| Homo sapiens chromosome 1 clone RP4-650F12, complete sequence
          Length = 112358

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 140   ttttaattcatttgccaacaa 160
             |||||||||||||||||||||
Sbjct: 83158 ttttaattcatttgccaacaa 83178
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>gb|AC034203.7| Homo sapiens chromosome 3 clone CTB-182H21, complete sequence
          Length = 105702

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 165   ctaattgattgatgggcattt 185
             |||||||||||||||||||||
Sbjct: 81948 ctaattgattgatgggcattt 81968
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>gb|AC091856.3| Homo sapiens chromosome 5 clone CTD-2315B5, complete sequence
          Length = 175220

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 165    ctaattgattgatgggcattt 185
              |||||||||||||||||||||
Sbjct: 104069 ctaattgattgatgggcattt 104089
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>gb|AC025887.4|AC025887 Homo sapiens chromosome , clone RP11-386P4, complete sequence
          Length = 150655

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   ctaattgattgatgggcattt 185
             |||||||||||||||||||||
Sbjct: 31582 ctaattgattgatgggcattt 31562
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>gb|AC133041.3| Homo sapiens 3 BAC CTD-2026G6 (Cal Tech Human BAC Library D) complete
             sequence
          Length = 59699

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 165   ctaattgattgatgggcattt 185
             |||||||||||||||||||||
Sbjct: 25398 ctaattgattgatgggcattt 25418
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>gb|AC099740.2| Takifugu rubripes clone 216J3, complete sequence
          Length = 64132

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   catttatacatttgcagaaaa 201
             |||||||||||||||||||||
Sbjct: 57375 catttatacatttgcagaaaa 57355
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>gb|AC098806.3| Takifugu rubripes clone 208D11, complete sequence
          Length = 130460

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   catttatacatttgcagaaaa 201
             |||||||||||||||||||||
Sbjct: 33145 catttatacatttgcagaaaa 33125
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>gb|AC104648.2| Homo sapiens BAC clone RP11-45D4 from 2, complete sequence
          Length = 112084

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   ctaattgattgatgggcattt 185
             |||||||||||||||||||||
Sbjct: 85254 ctaattgattgatgggcattt 85234
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>gb|AC106809.2| Homo sapiens chromosome 5 clone RP11-53K6, complete sequence
          Length = 113848

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   ctaattgattgatgggcattt 185
             |||||||||||||||||||||
Sbjct: 64764 ctaattgattgatgggcattt 64744
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>emb|CR352232.20| Zebrafish DNA sequence from clone DKEY-3L8 in linkage group 23,
             complete sequence
          Length = 206478

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 96    tttcagttgtgcattattcagtttgcttc 124
             ||||| |||||| ||||||||||||||||
Sbjct: 78454 tttcacttgtgctttattcagtttgcttc 78426
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>dbj|AP003498.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-167J8, complete
             sequence
          Length = 120199

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   ctaattgattgatgggcattt 185
             |||||||||||||||||||||
Sbjct: 25309 ctaattgattgatgggcattt 25289
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>gb|AC113989.6| Mus musculus chromosome 3, clone RP24-130I14, complete sequence
          Length = 159841

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   ccttggagaaaagatgagga 229
             ||||||||||||||||||||
Sbjct: 89487 ccttggagaaaagatgagga 89468
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>gb|AC139060.5| Mus musculus chromosome 16, clone RP23-58G17, complete sequence
          Length = 196065

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    agaacatccccttggagaaa 220
              ||||||||||||||||||||
Sbjct: 132775 agaacatccccttggagaaa 132756
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>gb|AC140189.3| Mus musculus BAC clone RP24-370G18 from chromosome 1, complete sequence
          Length = 182590

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   tataaattctcaggagaaaa 253
             ||||||||||||||||||||
Sbjct: 59841 tataaattctcaggagaaaa 59860
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>gb|AC121833.3| Mus musculus BAC clone RP24-69C16 from chromosome 3, complete sequence
          Length = 224456

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 27     taaatngacaaatagagagcaaa 49
              ||||| |||||||||||||||||
Sbjct: 149881 taaatagacaaatagagagcaaa 149859
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>gb|AC007035.3| Homo sapiens BAC clone RP11-104I19 from 7, complete sequence
          Length = 180397

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    gaaaagaacatccccttgga 216
              ||||||||||||||||||||
Sbjct: 140649 gaaaagaacatccccttgga 140668
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>emb|AL356113.8| Human DNA sequence from clone RP11-429A24 on chromosome 10 Contains part
              of a novel gene (DKFZp761L0424) (KIAA1217) and three novel
              genes (FLJ11983 FLJ14139), complete sequence
          Length = 190429

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    attgattgatgggcatttat 187
              ||||||||||||||||||||
Sbjct: 172898 attgattgatgggcatttat 172917
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>emb|AL355794.5| Human DNA sequence from clone RP4-781D12 on chromosome 1 Contains the
             5' end of a nucleosome assembly protein 1-like 4 (NAP1L4)
             pseudogene, the 5' end of the CD58  gene for CD58 antigen,
             (lymphocyte function-associated antigen 3), the 3' end of
             the IGSF3 gene for immunoglobulin superfamily member 3 and
             a CpG island, complete sequence
          Length = 88484

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   attgattgatgggcatttat 187
             ||||||||||||||||||||
Sbjct: 13786 attgattgatgggcatttat 13805
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>emb|AL049732.11|HSDA14C6 Human DNA sequence from clone RP6-14C6 on chromosome Xp11.21-11.23
             Contains  the 3' end of the PFKFB1 gene for
             6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1, and
             the TRO gene for trophinin, complete sequence
          Length = 103115

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   ttgattgatgggcatttata 188
             ||||||||||||||||||||
Sbjct: 82039 ttgattgatgggcatttata 82058
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>emb|AL627411.21| Mouse DNA sequence from clone RP23-346H6 on chromosome X, complete
             sequence
          Length = 185184

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   gaaaagaaccatggcatttg 268
             ||||||||||||||||||||
Sbjct: 39866 gaaaagaaccatggcatttg 39847
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>gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, complete sequence
          Length = 214250

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  aatttactggttccttttta 144
            ||||||||||||||||||||
Sbjct: 9275 aatttactggttccttttta 9294
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>gb|AC109928.4| Homo sapiens BAC clone RP11-755F21 from 4, complete sequence
          Length = 112353

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   attgattgatgggcatttat 187
             ||||||||||||||||||||
Sbjct: 21898 attgattgatgggcatttat 21879
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>gb|AC093694.4| Homo sapiens BAC clone RP11-769N3 from 4, complete sequence
          Length = 158566

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   attgattgatgggcatttat 187
             ||||||||||||||||||||
Sbjct: 93922 attgattgatgggcatttat 93903
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>gb|AC073648.7| Homo sapiens BAC clone RP11-747H12 from 4, complete sequence
          Length = 180659

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   taattgattgatgggcattt 185
             ||||||||||||||||||||
Sbjct: 63882 taattgattgatgggcattt 63901
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>ref|XM_679317.1| PREDICTED: Danio rerio similar to putative protein, with 2 coiled
           coil-4 domains, of eukaryotic origin, HoloCentric
           chromosome binding Protein HCP-6 (195.1 kD) (hcp-6)
           (LOC556493), mRNA
          Length = 4450

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 tgcagaaaagaacatcccct 212
           ||||||||||||||||||||
Sbjct: 635 tgcagaaaagaacatcccct 616
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>gb|AC005815.1| Homo sapiens chromosome 22 clone 239d10 map 22q11, complete sequence
          Length = 183085

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   attgattgatgggcatttat 187
             ||||||||||||||||||||
Sbjct: 16108 attgattgatgggcatttat 16127
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>emb|BX284619.11| Zebrafish DNA sequence from clone DKEY-251E24 in linkage group 1,
              complete sequence
          Length = 196931

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    tgcagaaaagaacatcccct 212
              ||||||||||||||||||||
Sbjct: 129282 tgcagaaaagaacatcccct 129301
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>gb|AC155910.6| Mus musculus 10 BAC RP24-492P8 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 156641

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    aatagagagcaaaccccaac 56
             ||||||||||||||||||||
Sbjct: 80243 aatagagagcaaaccccaac 80262
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>emb|AL935264.12| Mouse DNA sequence from clone RP23-118A9 on chromosome 4, complete
             sequence
          Length = 230886

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   ttctcaggagaaaagaacca 259
             ||||||||||||||||||||
Sbjct: 97878 ttctcaggagaaaagaacca 97859
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>gb|AC151922.2| Phaeodactylum tricornutum clone JGIAHOK-5A1, complete sequence
          Length = 38598

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   atggcatttgattcatctca 278
             ||||||||||||||||||||
Sbjct: 27030 atggcatttgattcatctca 27011


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,182,043
Number of Sequences: 3902068
Number of extensions: 3182043
Number of successful extensions: 102545
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102434
Number of HSP's gapped (non-prelim): 111
length of query: 283
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 261
effective length of database: 17,147,199,772
effective search space: 4475419140492
effective search space used: 4475419140492
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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