No.
Definition
Score (bits)
E Value
1 gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full...
167
4e-38
2 gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete...
74
5e-10
3 gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome...
66
1e-07
4 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
66
1e-07
5 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
66
1e-07
6 gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1...
58
3e-05
7 dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon...
58
3e-05
8 dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon...
58
3e-05
9 gb|AY107519.1| Zea mays PCO078033 mRNA sequence
56
1e-04
10 gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome...
54
5e-04
11 gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome...
52
0.002
12 gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome...
52
0.002
13 gb|AC121845.3| Mus musculus BAC clone RP24-82B23 from 5, complet...
48
0.029
14 gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, co...
42
1.8
15 dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
42
1.8
16 gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, compl...
42
1.8
17 gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D...
42
1.8
18 gb|AC168116.3| Mus musculus BAC clone RP24-108N24 from chromosom...
40
7.0
19 ref|XM_506587.1| PREDICTED Oryza sativa (japonica cultivar-group...
40
7.0
20 gb|AC024777.1| Caenorhabditis elegans cosmid Y42H9AR, complete s...
40
7.0
21 gb|AC117648.14| Mus musculus, clone RP23-254P23, complete sequence
40
7.0
22 gb|AC121981.3| Mus musculus BAC clone RP24-290K9 from 5, complet...
40
7.0
23 emb|AL591622.6| Human DNA sequence from clone RP11-141L16 on chr...
40
7.0
24 gb|AC137767.16| Homo sapiens 12 BAC RP13-942N8 (Roswell Park Can...
40
7.0
25 gb|AC137631.2| Homo sapiens 12 BAC RP11-1018F11 (Roswell Park Ca...
40
7.0
26 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
40
7.0
27 gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complet...
40
7.0
28 dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic D...
40
7.0
29 dbj|AK108661.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
7.0
30 dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
7.0
31 gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Canc...
40
7.0
32 gb|AY103669.1| Zea mays PCO073521 mRNA sequence
40
7.0
33 gb|AC161367.4| Mus musculus BAC clone RP23-450F3 from chromosome...
40
7.0
34 gb|AF033496.1|AF033496 Zea mays herbicide safener binding protei...
40
7.0
35 gb|AC153843.6| Mus musculus 10 BAC RP23-273P15 (Roswell Park Can...
40
7.0
36 emb|AL840639.3| Mouse DNA sequence from clone RP23-156E17 on chr...
40
7.0
>dbj|AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 65.9 bits (33), Expect = 1e-07
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 244 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 303
|||||||||||| || | ||||||| || |||||||| |||||||||||||| || ||||
Sbjct: 11549315 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11549374
Query: 304 ctgct 308
|||||
Sbjct: 11549375 ctgct 11549379
Score = 58.0 bits (29), Expect = 3e-05
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 234 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 293
|||||||| ||||||||||||| | ||||||||||| || |||| ||||||||||||
Sbjct: 11490619 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11490678
Query: 294 tcgctaaatcctgcttt 310
|| | |||||||||||
Sbjct: 11490679 tcattgaatcctgcttt 11490695
Score = 54.0 bits (27), Expect = 5e-04
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 240 tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 299
||||| |||||||| | || |||||||||||||||||||| ||||| || ||||| ||
Sbjct: 11353886 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11353945
Query: 300 aatcctgcttt 310
|| ||||||||
Sbjct: 11353946 aagcctgcttt 11353956
Score = 52.0 bits (26), Expect = 0.002
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 235 aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 294
||||| ||||||||||||||| | | |||||||||| || |||||| | ||||||||||
Sbjct: 7137521 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 7137580
Query: 295 cgctaaatcc 304
| || |||||
Sbjct: 7137581 cactgaatcc 7137590
Score = 50.1 bits (25), Expect = 0.007
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 244 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 303
|||||||||| | ||| ||||||||||||||| ||| |||||||||||||| || || |
Sbjct: 11352004 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 11352062
Query: 304 ctgct 308
|||||
Sbjct: 11352063 ctgct 11352067
Score = 46.1 bits (23), Expect = 0.11
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 334 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 384
|||||||||| ||||| ||| ||||| |||||||| |||||||||||||
Sbjct: 11490719 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 11490769
Score = 42.1 bits (21), Expect = 1.8
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 243 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 295
||||||||||| |||| || |||| ||||| |||||| |||||||| |||||
Sbjct: 11294531 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11294583
Score = 40.1 bits (20), Expect = 7.0
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 243 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 294
||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 11329598 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 11329649
>gb|DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 65.9 bits (33), Expect = 1e-07
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 244 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 303
|||||||||||| || | ||||||| || |||||||| |||||||||||||| || ||||
Sbjct: 11628504 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11628563
Query: 304 ctgct 308
|||||
Sbjct: 11628564 ctgct 11628568
Score = 58.0 bits (29), Expect = 3e-05
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 234 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 293
|||||||| ||||||||||||| | ||||||||||| || |||| ||||||||||||
Sbjct: 11569808 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11569867
Query: 294 tcgctaaatcctgcttt 310
|| | |||||||||||
Sbjct: 11569868 tcattgaatcctgcttt 11569884
Score = 54.0 bits (27), Expect = 5e-04
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 240 tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 299
||||| |||||||| | || |||||||||||||||||||| ||||| || ||||| ||
Sbjct: 11433075 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11433134
Query: 300 aatcctgcttt 310
|| ||||||||
Sbjct: 11433135 aagcctgcttt 11433145
Score = 52.0 bits (26), Expect = 0.002
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 235 aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 294
||||| ||||||||||||||| | | |||||||||| || |||||| | ||||||||||
Sbjct: 7203492 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 7203551
Query: 295 cgctaaatcc 304
| || |||||
Sbjct: 7203552 cactgaatcc 7203561
Score = 50.1 bits (25), Expect = 0.007
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 244 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 303
|||||||||| | ||| ||||||||||||||| ||| |||||||||||||| || || |
Sbjct: 11431193 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 11431251
Query: 304 ctgct 308
|||||
Sbjct: 11431252 ctgct 11431256
Score = 46.1 bits (23), Expect = 0.11
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 334 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 384
|||||||||| ||||| ||| ||||| |||||||| |||||||||||||
Sbjct: 11569908 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 11569958
Score = 42.1 bits (21), Expect = 1.8
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 243 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 295
||||||||||| |||| || |||| ||||| |||||| |||||||| |||||
Sbjct: 11373720 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11373772
Score = 40.1 bits (20), Expect = 7.0
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 243 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 294
||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 11408787 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 11408838
>gb|AC112208.3 | Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
map C53961S, complete sequence
Length = 175121
Score = 54.0 bits (27), Expect = 5e-04
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 240 tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 299
||||| |||||||| | || |||||||||||||||||||| ||||| || ||||| ||
Sbjct: 140244 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 140303
Query: 300 aatcctgcttt 310
|| ||||||||
Sbjct: 140304 aagcctgcttt 140314
Score = 50.1 bits (25), Expect = 0.007
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 244 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 303
|||||||||| | ||| ||||||||||||||| ||| |||||||||||||| || || |
Sbjct: 138362 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 138420
Query: 304 ctgct 308
|||||
Sbjct: 138421 ctgct 138425
Score = 42.1 bits (21), Expect = 1.8
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 243 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 295
||||||||||| |||| || |||| ||||| |||||| |||||||| |||||
Sbjct: 80889 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 80941
Score = 40.1 bits (20), Expect = 7.0
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 243 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 294
||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 115956 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 116007
>emb|AL840639.3 | Mouse DNA sequence from clone RP23-156E17 on chromosome 2, complete
sequence
Length = 192074
Score = 40.1 bits (20), Expect = 7.0
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 437 aacaataacctttccccccatttc 460
|||||||||||||||| |||||||
Sbjct: 17596 aacaataacctttcccaccatttc 17619
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,970,973
Number of Sequences: 3902068
Number of extensions: 4970973
Number of successful extensions: 92490
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92159
Number of HSP's gapped (non-prelim): 328
length of query: 515
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 492
effective length of database: 17,143,297,704
effective search space: 8434502470368
effective search space used: 8434502470368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)