ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2i01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full... 167 4e-38
2gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete... 74 5e-10
3gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
6gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 58 3e-05
7dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
8dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
9gb|AY107519.1| Zea mays PCO078033 mRNA sequence 56 1e-04
10gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 54 5e-04
11gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
12gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
13gb|AC121845.3| Mus musculus BAC clone RP24-82B23 from 5, complet... 48 0.029
14gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, co... 42 1.8
15dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 42 1.8
16gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, compl... 42 1.8
17gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D... 42 1.8
18gb|AC168116.3| Mus musculus BAC clone RP24-108N24 from chromosom... 40 7.0
19ref|XM_506587.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 7.0
20gb|AC024777.1| Caenorhabditis elegans cosmid Y42H9AR, complete s... 40 7.0
21gb|AC117648.14| Mus musculus, clone RP23-254P23, complete sequence 40 7.0
22gb|AC121981.3| Mus musculus BAC clone RP24-290K9 from 5, complet... 40 7.0
23emb|AL591622.6| Human DNA sequence from clone RP11-141L16 on chr... 40 7.0
24gb|AC137767.16| Homo sapiens 12 BAC RP13-942N8 (Roswell Park Can... 40 7.0
25gb|AC137631.2| Homo sapiens 12 BAC RP11-1018F11 (Roswell Park Ca... 40 7.0
26dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
27gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complet... 40 7.0
28dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
29dbj|AK108661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.0
30dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.0
31gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Canc... 40 7.0
32gb|AY103669.1| Zea mays PCO073521 mRNA sequence 40 7.0
33gb|AC161367.4| Mus musculus BAC clone RP23-450F3 from chromosome... 40 7.0
34gb|AF033496.1|AF033496 Zea mays herbicide safener binding protei... 40 7.0
35gb|AC153843.6| Mus musculus 10 BAC RP23-273P15 (Roswell Park Can... 40 7.0
36emb|AL840639.3| Mouse DNA sequence from clone RP23-156E17 on chr... 40 7.0

>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score =  167 bits (84), Expect = 4e-38
 Identities = 141/160 (88%)
 Strand = Plus / Minus

                                                                       
Query: 238 cttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgc 297
           ||||||||||||||||||||| |||||||   || |||||||||||||||||||||| ||
Sbjct: 513 cttatggatagacctcgatgacacctcgatggccaagtttcttgacaatcttatagttgc 454

                                                                       
Query: 298 taaatcctgcttttgtaaagattgtgctccagtcattttcatctcgttgccgtccttttg 357
           |||| |||||||| |||||||| |||||||| || |||||||| |||||||||||| | |
Sbjct: 453 taaaccctgctttcgtaaagatcgtgctccactccttttcatcccgttgccgtcctctgg 394

                                                   
Query: 358 tacataccaacatgagcatatccatcaacagttcggtttc 397
           ||||||  ||||| ||||| ||||||| ||||||||||||
Sbjct: 393 tacatatgaacatcagcatgtccatcagcagttcggtttc 354



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 447 tttccccccatttcgcgggacggaatggccttcttgcattgagacaggatattgatgcaa 506
           ||||| |||||||| ||||| || |||||||||||||||||||  ||||| |||||||||
Sbjct: 304 tttcctcccatttctcgggaaggtatggccttcttgcattgagcgaggatcttgatgcaa 245

                   
Query: 507 tcttcgtc 514
           || |||||
Sbjct: 244 tcctcgtc 237



to top

>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                        
Query: 246  tagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatcct 305
            ||||||||||| | |||||| || ||||||||||||||||| || ||||||||||| |||
Sbjct: 1132 tagacctcgataacacctcgtgcacccagtttcttgacaattttgtagtcgctaaaccct 1073

                 
Query: 306  gcttt 310
            |||||
Sbjct: 1072 gcttt 1068



to top

>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0005P21, complete sequence
          Length = 147381

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                         
Query: 244   gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 303
             |||||||||||| || | ||||||| || |||||||| |||||||||||||| || ||||
Sbjct: 64473 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 64414

                  
Query: 304   ctgct 308
             |||||
Sbjct: 64413 ctgct 64409



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                          
Query: 234    caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 293
              |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 123169 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 123110

                               
Query: 294    tcgctaaatcctgcttt 310
              ||  | |||||||||||
Sbjct: 123109 tcattgaatcctgcttt 123093



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                 
Query: 334    tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 384
              |||||||||| ||||| ||| |||||   |||||||| |||||||||||||
Sbjct: 123069 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 123019



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 244      gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 303
                |||||||||||| || | ||||||| || |||||||| |||||||||||||| || ||||
Sbjct: 11549315 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11549374

                     
Query: 304      ctgct 308
                |||||
Sbjct: 11549375 ctgct 11549379



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                            
Query: 234      caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 293
                |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 11490619 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11490678

                                 
Query: 294      tcgctaaatcctgcttt 310
                ||  | |||||||||||
Sbjct: 11490679 tcattgaatcctgcttt 11490695



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                            
Query: 240      tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 299
                ||||| |||||||| | ||  |||||||||||||||||||| ||||| || ||||| || 
Sbjct: 11353886 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11353945

                           
Query: 300      aatcctgcttt 310
                || ||||||||
Sbjct: 11353946 aagcctgcttt 11353956



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                           
Query: 235     aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 294
               ||||| |||||||||||||||  | | |||||||||| || |||||| | ||||||||||
Sbjct: 7137521 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 7137580

                         
Query: 295     cgctaaatcc 304
               | || |||||
Sbjct: 7137581 cactgaatcc 7137590



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                            
Query: 244      gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 303
                |||||||||| |  ||| ||||||||||||||| ||| |||||||||||||| || || |
Sbjct: 11352004 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 11352062

                     
Query: 304      ctgct 308
                |||||
Sbjct: 11352063 ctgct 11352067



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                   
Query: 334      tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 384
                |||||||||| ||||| ||| |||||   |||||||| |||||||||||||
Sbjct: 11490719 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 11490769



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 243      ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 295
                ||||||||||| |||| ||  |||| ||||| |||||| |||||||| |||||
Sbjct: 11294531 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11294583



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 243      ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 294
                ||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 11329598 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 11329649



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 244      gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 303
                |||||||||||| || | ||||||| || |||||||| |||||||||||||| || ||||
Sbjct: 11628504 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11628563

                     
Query: 304      ctgct 308
                |||||
Sbjct: 11628564 ctgct 11628568



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                            
Query: 234      caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 293
                |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 11569808 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11569867

                                 
Query: 294      tcgctaaatcctgcttt 310
                ||  | |||||||||||
Sbjct: 11569868 tcattgaatcctgcttt 11569884



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                            
Query: 240      tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 299
                ||||| |||||||| | ||  |||||||||||||||||||| ||||| || ||||| || 
Sbjct: 11433075 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11433134

                           
Query: 300      aatcctgcttt 310
                || ||||||||
Sbjct: 11433135 aagcctgcttt 11433145



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                           
Query: 235     aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 294
               ||||| |||||||||||||||  | | |||||||||| || |||||| | ||||||||||
Sbjct: 7203492 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 7203551

                         
Query: 295     cgctaaatcc 304
               | || |||||
Sbjct: 7203552 cactgaatcc 7203561



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                            
Query: 244      gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 303
                |||||||||| |  ||| ||||||||||||||| ||| |||||||||||||| || || |
Sbjct: 11431193 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 11431251

                     
Query: 304      ctgct 308
                |||||
Sbjct: 11431252 ctgct 11431256



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                   
Query: 334      tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 384
                |||||||||| ||||| ||| |||||   |||||||| |||||||||||||
Sbjct: 11569908 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 11569958



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 243      ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 295
                ||||||||||| |||| ||  |||| ||||| |||||| |||||||| |||||
Sbjct: 11373720 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11373772



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 243      ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 294
                ||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 11408787 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 11408838



to top

>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 234  caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 293
            |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 8918 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 8859

                             
Query: 294  tcgctaaatcctgcttt 310
            ||  | |||||||||||
Sbjct: 8858 tcattgaatcctgcttt 8842



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 334  tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 384
            |||||||||| ||||| ||| |||||   |||||||| |||||||||||||
Sbjct: 8818 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 8768



to top

>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
            insert sequence
          Length = 1362

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 234  caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 293
            |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 1162 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 1103

                             
Query: 294  tcgctaaatcctgcttt 310
            ||  | |||||||||||
Sbjct: 1102 tcattgaatcctgcttt 1086



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 334  tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 384
            |||||||||| ||||| ||| |||||   |||||||| |||||||||||||
Sbjct: 1062 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 1012



to top

>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
            insert sequence
          Length = 1264

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 234  caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 293
            |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 1167 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 1108

                             
Query: 294  tcgctaaatcctgcttt 310
            ||  | |||||||||||
Sbjct: 1107 tcattgaatcctgcttt 1091



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 334  tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 384
            |||||||||| ||||| ||| |||||   |||||||| |||||||||||||
Sbjct: 1067 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 1017



to top

>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 241  atggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcg 296
            |||| ||||||||||||| ||| |||||||| | ||||||||||| ||| ||||||
Sbjct: 1107 atgggtagacctcgatgacaccacgagctccgattttcttgacaaccttgtagtcg 1052



to top

>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
              map C53961S, complete sequence
          Length = 175121

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                          
Query: 240    tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 299
              ||||| |||||||| | ||  |||||||||||||||||||| ||||| || ||||| || 
Sbjct: 140244 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 140303

                         
Query: 300    aatcctgcttt 310
              || ||||||||
Sbjct: 140304 aagcctgcttt 140314



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                          
Query: 244    gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 303
              |||||||||| |  ||| ||||||||||||||| ||| |||||||||||||| || || |
Sbjct: 138362 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 138420

                   
Query: 304    ctgct 308
              |||||
Sbjct: 138421 ctgct 138425



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 243   ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 295
             ||||||||||| |||| ||  |||| ||||| |||||| |||||||| |||||
Sbjct: 80889 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 80941



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                  
Query: 243    ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 294
              ||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 115956 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 116007



to top

>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                         
Query: 235   aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 294
             ||||| |||||||||||||||  | | |||||||||| || |||||| | ||||||||||
Sbjct: 45034 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 44975

                       
Query: 295   cgctaaatcc 304
             | || |||||
Sbjct: 44974 cactgaatcc 44965



to top

>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                         
Query: 235   aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 294
             ||||| |||||||||||||||  | | |||||||||| || |||||| | ||||||||||
Sbjct: 50741 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 50800

                       
Query: 295   cgctaaatcc 304
             | || |||||
Sbjct: 50801 cactgaatcc 50810



to top

>gb|AC121845.3| Mus musculus BAC clone RP24-82B23 from 5, complete sequence
          Length = 217530

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 7     catacatatacccatacaactcacacca 34
             |||||||||||||||||||| |||||||
Sbjct: 92220 catacatatacccatacaacccacacca 92247



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     catacatatacccatacaac 26
             ||||||||||||||||||||
Sbjct: 92193 catacatatacccatacaac 92212



to top

>gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, complete sequence
          Length = 197907

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 136   ttacaaacttggtcattgccc 156
             |||||||||||||||||||||
Sbjct: 98423 ttacaaacttggtcattgccc 98403



to top

>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 218     cgaggcacttggcacacaatc 238
               |||||||||||||||||||||
Sbjct: 2961124 cgaggcacttggcacacaatc 2961104



to top

>gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, complete sequence
          Length = 133862

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     gacatacatatacccatacaa 25
             |||||||||||||||||||||
Sbjct: 59300 gacatacatatacccatacaa 59280



to top

>gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D23, complete sequence
          Length = 98620

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 5    gacatacatatacccatacaa 25
            |||||||||||||||||||||
Sbjct: 1205 gacatacatatacccatacaa 1185



to top

>gb|AC168116.3| Mus musculus BAC clone RP24-108N24 from chromosome 1, complete sequence
          Length = 158847

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      acatacatatacccatacaa 25
              ||||||||||||||||||||
Sbjct: 115847 acatacatatacccatacaa 115828



to top

>ref|XM_506587.1| PREDICTED Oryza sativa (japonica cultivar-group), P0597G07.108
           patrial mRNA
          Length = 1493

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 agctcccagtttcttgacaa 285
           ||||||||||||||||||||
Sbjct: 441 agctcccagtttcttgacaa 460



to top

>gb|AC024777.1| Caenorhabditis elegans cosmid Y42H9AR, complete sequence
          Length = 15915

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 389  ttcggtttctaatatttctt 408
            ||||||||||||||||||||
Sbjct: 3670 ttcggtttctaatatttctt 3689



to top

>gb|AC117648.14| Mus musculus, clone RP23-254P23, complete sequence
          Length = 228273

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      acatacatatacccatacaa 25
              ||||||||||||||||||||
Sbjct: 228231 acatacatatacccatacaa 228250



to top

>gb|AC121981.3| Mus musculus BAC clone RP24-290K9 from 5, complete sequence
          Length = 184908

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 489   gacaggatattgatgcaatc 508
             ||||||||||||||||||||
Sbjct: 89926 gacaggatattgatgcaatc 89907



to top

>emb|AL591622.6| Human DNA sequence from clone RP11-141L16 on chromosome 9, complete
            sequence
          Length = 89944

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   tattgaaactaaagatacat 70
            ||||||||||||||||||||
Sbjct: 5621 tattgaaactaaagatacat 5602



to top

>gb|AC137767.16| Homo sapiens 12 BAC RP13-942N8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 86027

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     atacatatacccatacaact 27
             ||||||||||||||||||||
Sbjct: 47695 atacatatacccatacaact 47714



to top

>gb|AC137631.2| Homo sapiens 12 BAC RP11-1018F11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 55265

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     atacatatacccatacaact 27
             ||||||||||||||||||||
Sbjct: 16975 atacatatacccatacaact 16994



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 266      agctcccagtttcttgacaa 285
                ||||||||||||||||||||
Sbjct: 29313283 agctcccagtttcttgacaa 29313302



to top

>gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complete sequence
          Length = 151319

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      acatacatatacccatacaa 25
              ||||||||||||||||||||
Sbjct: 140132 acatacatatacccatacaa 140113



to top

>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0597G07
          Length = 152928

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    agctcccagtttcttgacaa 285
              ||||||||||||||||||||
Sbjct: 101972 agctcccagtttcttgacaa 101991



to top

>dbj|AK108661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F02, full
           insert sequence
          Length = 1493

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 agctcccagtttcttgacaa 285
           ||||||||||||||||||||
Sbjct: 441 agctcccagtttcttgacaa 460



to top

>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
            insert sequence
          Length = 1262

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 243  ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 294
            ||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 1167 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 1116



to top

>gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 119034

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   atttctttggatgatgagcc 421
             ||||||||||||||||||||
Sbjct: 43678 atttctttggatgatgagcc 43659



to top

>gb|AY103669.1| Zea mays PCO073521 mRNA sequence
          Length = 1503

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 323  gctccagtcattttcatctcgttgccgtccttttgt 358
            |||||| || ||||||||||  ||||||||||||||
Sbjct: 1040 gctccattctttttcatctctctgccgtccttttgt 1005



to top

>gb|AC161367.4| Mus musculus BAC clone RP23-450F3 from chromosome 1, complete sequence
          Length = 188588

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      acatacatatacccatacaa 25
              ||||||||||||||||||||
Sbjct: 158515 acatacatatacccatacaa 158534



to top

>gb|AF033496.1|AF033496 Zea mays herbicide safener binding protein (SBP1) mRNA, complete cds
          Length = 1438

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 323  gctccagtcattttcatctcgttgccgtccttttgt 358
            |||||| || ||||||||||  ||||||||||||||
Sbjct: 1038 gctccattctttttcatctctctgccgtccttttgt 1003



to top

>gb|AC153843.6| Mus musculus 10 BAC RP23-273P15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 202968

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     acatacatatacccatacaa 25
             ||||||||||||||||||||
Sbjct: 48112 acatacatatacccatacaa 48131



to top

>emb|AL840639.3| Mouse DNA sequence from clone RP23-156E17 on chromosome 2, complete
             sequence
          Length = 192074

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 437   aacaataacctttccccccatttc 460
             |||||||||||||||| |||||||
Sbjct: 17596 aacaataacctttcccaccatttc 17619


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,970,973
Number of Sequences: 3902068
Number of extensions: 4970973
Number of successful extensions: 92490
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92159
Number of HSP's gapped (non-prelim): 328
length of query: 515
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 492
effective length of database: 17,143,297,704
effective search space: 8434502470368
effective search space used: 8434502470368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top