ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2h18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK122146.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 6e-25
2dbj|AK063787.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 6e-25
3ref|XM_479340.1| Oryza sativa (japonica cultivar-group), mRNA 113 6e-22
4gb|BT016940.1| Zea mays clone E04912704F04.c mRNA sequence 111 2e-21
5dbj|AK058954.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
6gb|AY111015.1| Zea mays CL4951_1 mRNA sequence 103 5e-19
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
8dbj|AP003822.2| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
9dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
11dbj|AP004126.4| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
12gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
13gb|BC037460.1| Mus musculus disrupted in renal carcinoma 2 (huma... 42 1.7
14gb|AC129574.8| Mus musculus chromosome 16, clone RP23-78C2, comp... 42 1.7
15gb|AC136149.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
16emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.7
17gb|AC155294.2| Mus musculus BAC clone RP24-328F24 from chromosom... 42 1.7
18dbj|AK172331.1| Mus musculus activated spleen cDNA, RIKEN full-l... 42 1.7
19dbj|AK034214.1| Mus musculus adult male diencephalon cDNA, RIKEN... 42 1.7
20dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
21dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
22dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
23gb|AC154541.2| Mus musculus BAC clone RP23-458N20 from chromosom... 42 1.7
24gb|AF269239.1|AF269239 Mus musculus plasmid rescue fragment sequ... 42 1.7
25dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 42 1.7
26dbj|AP004465.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
27dbj|AK073940.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
28gb|AC127225.5| Mus musculus BAC clone RP24-499N1 from 3, complet... 42 1.7
29gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
30emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 42 1.7
31ref|NM_153550.2| Mus musculus disrupted in renal carcinoma 2 (hu... 42 1.7
32ref|XM_482705.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.8
33gb|AY731532.1| Arachis hypogaea clone PM714 microsatellite sequence 40 6.8
34gb|AC158586.8| Mus musculus chromosome 5, clone RP24-372A2, comp... 40 6.8
35emb|AL135908.13| Human DNA sequence from clone RP1-28O17 on chro... 40 6.8
36gb|AC123518.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
37gb|AF451895.1| Zea mays LIGULELESS1 (lg1) gene, complete cds 40 6.8
38gb|AC009532.9| Homo sapiens chromosome , clone RP11-58H20, compl... 40 6.8
39dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
40gb|AE004490.1| Pseudomonas aeruginosa PAO1, section 51 of 529 of... 40 6.8
41gb|AC116535.9| Homo sapiens chromosome 11, clone RP11-685M7, com... 40 6.8
42dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
43dbj|AK069964.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.8
44dbj|AK065326.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.8
45gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
46emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.8
47emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.8
48gb|U89496.1|ZMU89496 Zea mays liguleless1 protein (liguleless1) ... 40 6.8
49gb|J05100.1|SRAAFPG Sea raven (H.americanus) antifreeze protein ... 40 6.8 
>dbj|AK122146.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138B10, full
           insert sequence
          Length = 534

 Score =  123 bits (62), Expect = 6e-25
 Identities = 137/162 (84%)
 Strand = Plus / Minus

                                                                       
Query: 197 ttcactcctttttcccgatcccgttagacatgttgtagatcccacgaccaatcatgaaca 256
           ||||||||||||||||||  || | |||||||||||| | |||||| || ||||| ||||
Sbjct: 341 ttcactcctttttcccgactccatgagacatgttgtacaccccacggcctatcataaaca 282

                                                                       
Query: 257 agctggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcgtaacggcctt 316
           |||||||| | ||||| || |||||||||||||||||| ||||| |||| ||||| ||||
Sbjct: 281 agctggaggcggcaagagcgaggggaatggcaacggaggtgaccacatcataacgccctt 222

                                                     
Query: 317 taaggtggatatgcttgctcaagttctggaaatactgctgct 358
           | || |   | |||||| |||||||||| |||||||||||||
Sbjct: 221 tcagatacgtgtgcttggtcaagttctgaaaatactgctgct 180
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>dbj|AK063787.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-E01, full
           insert sequence
          Length = 622

 Score =  123 bits (62), Expect = 6e-25
 Identities = 137/162 (84%)
 Strand = Plus / Minus

                                                                       
Query: 197 ttcactcctttttcccgatcccgttagacatgttgtagatcccacgaccaatcatgaaca 256
           ||||||||||||||||||  || | |||||||||||| | |||||| || ||||| ||||
Sbjct: 257 ttcactcctttttcccgactccatgagacatgttgtacaccccacggcctatcataaaca 198

                                                                       
Query: 257 agctggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcgtaacggcctt 316
           |||||||| | ||||| || |||||||||||||||||| ||||| |||| ||||| ||||
Sbjct: 197 agctggaggcggcaagagcgaggggaatggcaacggaggtgaccacatcataacgccctt 138

                                                     
Query: 317 taaggtggatatgcttgctcaagttctggaaatactgctgct 358
           | || |   | |||||| |||||||||| |||||||||||||
Sbjct: 137 tcagatacgtgtgcttggtcaagttctgaaaatactgctgct 96
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>ref|XM_479340.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 483

 Score =  113 bits (57), Expect = 6e-22
 Identities = 162/197 (82%)
 Strand = Plus / Minus

                                                                       
Query: 200 actcctttttcccgatcccgttagacatgttgtagatcccacgaccaatcatgaacaagc 259
           |||| |||||||| || ||||  ||||||||||| |  ||||| ||||||||||||||||
Sbjct: 294 actcttttttcccaataccgtgggacatgttgtaaactccacggccaatcatgaacaagc 235

                                                                       
Query: 260 tggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcgtaacggcctttaa 319
           ||| |||||| |||||||||||||||||||| ||  ||| | |||||||||| || || |
Sbjct: 234 tggtgccagccagcgcaaggggaatggcaacagatgtgatcacatcgtaacgccccttca 175

                                                                       
Query: 320 ggtggatatgcttgctcaagttctggaaatactgctgcttctgaacaagcttctcacgtg 379
           ||| | | |||||| | || ||||| ||||| ||||| | || ||  |||||||||||||
Sbjct: 174 ggtaggtgtgcttggttaaattctgaaaatattgctgttgcttaaacagcttctcacgtg 115

                            
Query: 380 ggtaaaatggtgcctct 396
           |   |||||||||||||
Sbjct: 114 gcacaaatggtgcctct 98



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 31  ttagcatcaatttgctgacatcaaatat 58
           ||||||||||||||||||||||| ||||
Sbjct: 441 ttagcatcaatttgctgacatcagatat 414
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>gb|BT016940.1| Zea mays clone E04912704F04.c mRNA sequence
          Length = 462

 Score =  111 bits (56), Expect = 2e-21
 Identities = 128/152 (84%)
 Strand = Plus / Plus

                                                                       
Query: 198 tcactcctttttcccgatcccgttagacatgttgtagatcccacgaccaatcatgaacaa 257
           ||||||||||||||| || || | |||||||||||| |  ||||| ||||||||||||| 
Sbjct: 165 tcactcctttttcccaattccatgagacatgttgtaaactccacgcccaatcatgaacat 224

                                                                       
Query: 258 gctggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcgtaacggccttt 317
           ||||||| ||||||| ||||| || |||||||||||| ||| | ||||||| || |||||
Sbjct: 225 gctggaggcagcaagtgcaagagggatggcaacggaggtgatcacatcgtagcgcccttt 284

                                           
Query: 318 aaggtggatatgcttgctcaagttctggaaat 349
            |||| | | |||||| ||| |||||||||||
Sbjct: 285 caggtaggtgtgcttggtcatgttctggaaat 316
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>dbj|AK058954.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-B01, full
           insert sequence
          Length = 483

 Score =  105 bits (53), Expect = 1e-19
 Identities = 149/181 (82%)
 Strand = Plus / Minus

                                                                       
Query: 200 actcctttttcccgatcccgttagacatgttgtagatcccacgaccaatcatgaacaagc 259
           |||| |||||||| || ||||  ||||||||||| |  ||||| ||||||||||||||||
Sbjct: 294 actcttttttcccaataccgtgggacatgttgtaaactccacggccaatcatgaacaagc 235

                                                                       
Query: 260 tggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcgtaacggcctttaa 319
           ||| |||||| |||||||||||||||||||| ||  ||| | |||||||||| || || |
Sbjct: 234 tggtgccagccagcgcaaggggaatggcaacagatgtgatcacatcgtaacgccccttca 175

                                                                       
Query: 320 ggtggatatgcttgctcaagttctggaaatactgctgcttctgaacaagcttctcacgtg 379
           ||| | | |||||| | || ||||| ||||| ||||| | || ||  |||||||||||||
Sbjct: 174 ggtaggtgtgcttggttaaattctgaaaatattgctgttgcttaaacagcttctcacgtg 115

            
Query: 380 g 380
           |
Sbjct: 114 g 114



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 31  ttagcatcaatttgctgacatcaaatat 58
           ||||||||||||||||||||||| ||||
Sbjct: 441 ttagcatcaatttgctgacatcagatat 414
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>gb|AY111015.1| Zea mays CL4951_1 mRNA sequence
          Length = 656

 Score =  103 bits (52), Expect = 5e-19
 Identities = 127/152 (83%)
 Strand = Plus / Minus

                                                                       
Query: 198 tcactcctttttcccgatcccgttagacatgttgtagatcccacgaccaatcatgaacaa 257
           ||||||||| ||||| || || | |||||||||||| |  ||||| ||||||||||||| 
Sbjct: 284 tcactccttcttcccaattccatgagacatgttgtaaactccacgcccaatcatgaacat 225

                                                                       
Query: 258 gctggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcgtaacggccttt 317
           ||||||| ||||||| ||||| || |||||||||||| ||| | ||||||| || |||||
Sbjct: 224 gctggaggcagcaagtgcaagagggatggcaacggaggtgatcacatcgtagcgcccttt 165

                                           
Query: 318 aaggtggatatgcttgctcaagttctggaaat 349
            |||| | | |||||| ||| |||||||||||
Sbjct: 164 caggtaggtgtgcttggtcatgttctggaaat 133
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 126/152 (82%)
 Strand = Plus / Minus

                                                                            
Query: 245      caatcatgaacaagctggagccagcaagcgcaaggggaatggcaacggagatgaccgcat 304
                |||||||||||||||||| |||||| |||||||||||||||||||| ||  ||| | |||
Sbjct: 26987914 caatcatgaacaagctggtgccagccagcgcaaggggaatggcaacagatgtgatcacat 26987855

                                                                            
Query: 305      cgtaacggcctttaaggtggatatgcttgctcaagttctggaaatactgctgcttctgaa 364
                ||||||| || || |||| | | |||||| | || ||||| ||||| ||||| | || ||
Sbjct: 26987854 cgtaacgccccttcaggtaggtgtgcttggttaaattctgaaaatattgctgttgcttaa 26987795

                                                
Query: 365      caagcttctcacgtgggtaaaatggtgcctct 396
                  ||||||||||||||   |||||||||||||
Sbjct: 26987794 acagcttctcacgtggcacaaatggtgcctct 26987763



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 31       ttagcatcaatttgctgacatcaaatat 58
                ||||||||||||||||||||||| ||||
Sbjct: 26988200 ttagcatcaatttgctgacatcagatat 26988173
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>dbj|AP003822.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1316_A04
          Length = 87144

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 126/152 (82%)
 Strand = Plus / Minus

                                                                         
Query: 245   caatcatgaacaagctggagccagcaagcgcaaggggaatggcaacggagatgaccgcat 304
             |||||||||||||||||| |||||| |||||||||||||||||||| ||  ||| | |||
Sbjct: 52392 caatcatgaacaagctggtgccagccagcgcaaggggaatggcaacagatgtgatcacat 52333

                                                                         
Query: 305   cgtaacggcctttaaggtggatatgcttgctcaagttctggaaatactgctgcttctgaa 364
             ||||||| || || |||| | | |||||| | || ||||| ||||| ||||| | || ||
Sbjct: 52332 cgtaacgccccttcaggtaggtgtgcttggttaaattctgaaaatattgctgttgcttaa 52273

                                             
Query: 365   caagcttctcacgtgggtaaaatggtgcctct 396
               ||||||||||||||   |||||||||||||
Sbjct: 52272 acagcttctcacgtggcacaaatggtgcctct 52241



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 31    ttagcatcaatttgctgacatcaaatat 58
             ||||||||||||||||||||||| ||||
Sbjct: 52678 ttagcatcaatttgctgacatcagatat 52651
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>dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0503D09
          Length = 144443

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 126/152 (82%)
 Strand = Plus / Minus

                                                                          
Query: 245    caatcatgaacaagctggagccagcaagcgcaaggggaatggcaacggagatgaccgcat 304
              |||||||||||||||||| |||||| |||||||||||||||||||| ||  ||| | |||
Sbjct: 136505 caatcatgaacaagctggtgccagccagcgcaaggggaatggcaacagatgtgatcacat 136446

                                                                          
Query: 305    cgtaacggcctttaaggtggatatgcttgctcaagttctggaaatactgctgcttctgaa 364
              ||||||| || || |||| | | |||||| | || ||||| ||||| ||||| | || ||
Sbjct: 136445 cgtaacgccccttcaggtaggtgtgcttggttaaattctgaaaatattgctgttgcttaa 136386

                                              
Query: 365    caagcttctcacgtgggtaaaatggtgcctct 396
                ||||||||||||||   |||||||||||||
Sbjct: 136385 acagcttctcacgtggcacaaatggtgcctct 136354



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 31     ttagcatcaatttgctgacatcaaatat 58
              ||||||||||||||||||||||| ||||
Sbjct: 136791 ttagcatcaatttgctgacatcagatat 136764
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 95/112 (84%)
 Strand = Plus / Plus

                                                                           
Query: 247     atcatgaacaagctggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcg 306
               ||||| |||||||||||| | ||||| || |||||||||||||||||| ||||| |||| 
Sbjct: 3345296 atcataaacaagctggaggcggcaagagcgaggggaatggcaacggaggtgaccacatca 3345355

                                                                   
Query: 307     taacggcctttaaggtggatatgcttgctcaagttctggaaatactgctgct 358
               ||||| ||||| || |   | |||||| |||||||||| |||||||||||||
Sbjct: 3345356 taacgccctttcagatacgtgtgcttggtcaagttctgaaaatactgctgct 3345407



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                             
Query: 197     ttcactcctttttcccgatcccgttagacatgttgtagatcccacg 242
               ||||||||||||||||||  || | |||||||||||| | ||||||
Sbjct: 3345150 ttcactcctttttcccgactccatgagacatgttgtacaccccacg 3345195
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>dbj|AP004126.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ9003_G05
          Length = 141860

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 95/112 (84%)
 Strand = Plus / Plus

                                                                         
Query: 247   atcatgaacaagctggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcg 306
             ||||| |||||||||||| | ||||| || |||||||||||||||||| ||||| |||| 
Sbjct: 94156 atcataaacaagctggaggcggcaagagcgaggggaatggcaacggaggtgaccacatca 94215

                                                                 
Query: 307   taacggcctttaaggtggatatgcttgctcaagttctggaaatactgctgct 358
             ||||| ||||| || |   | |||||| |||||||||| |||||||||||||
Sbjct: 94216 taacgccctttcagatacgtgtgcttggtcaagttctgaaaatactgctgct 94267



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 197   ttcactcctttttcccgatcccgttagacatgttgtagatcccacg 242
             ||||||||||||||||||  || | |||||||||||| | ||||||
Sbjct: 94010 ttcactcctttttcccgactccatgagacatgttgtacaccccacg 94055
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>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0052H02, complete sequence
          Length = 159632

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 443    acggggttgccggcggcggcg 463
              |||||||||||||||||||||
Sbjct: 116582 acggggttgccggcggcggcg 116562
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>gb|BC037460.1| Mus musculus disrupted in renal carcinoma 2 (human), mRNA (cDNA
           clone MGC:47126 IMAGE:4190539), complete cds
          Length = 2073

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 422 gcgcgcaggggccgggaagcgacgg 446
           ||||||||||||||||| |||||||
Sbjct: 168 gcgcgcaggggccgggaggcgacgg 192
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>gb|AC129574.8| Mus musculus chromosome 16, clone RP23-78C2, complete sequence
          Length = 214649

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 422    gcgcgcaggggccgggaagcgacgg 446
              ||||||||||||||||| |||||||
Sbjct: 161067 gcgcgcaggggccgggaggcgacgg 161091
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>gb|AC136149.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0060B06, complete sequence
          Length = 162568

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 453    cggcggcggcgggtggatctg 473
              |||||||||||||||||||||
Sbjct: 102710 cggcggcggcgggtggatctg 102730
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 456   cggcggcgggtggatctggag 476
             |||||||||||||||||||||
Sbjct: 26267 cggcggcgggtggatctggag 26287
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>gb|AC155294.2| Mus musculus BAC clone RP24-328F24 from chromosome 13, complete sequence
          Length = 174186

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 59     cccaaataccaacaaaagagaactg 83
              ||||||||||| |||||||||||||
Sbjct: 162002 cccaaataccagcaaaagagaactg 161978
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>dbj|AK172331.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830201N18 product:disrupted in renal
           carcinoma 2 (human), full insert sequence
          Length = 2090

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 422 gcgcgcaggggccgggaagcgacgg 446
           ||||||||||||||||| |||||||
Sbjct: 209 gcgcgcaggggccgggaggcgacgg 233
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>dbj|AK034214.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length
           enriched library, clone:9330164E21 product:hypothetical
           Trypsin-like serine proteases structure containing
           protein, full insert sequence
          Length = 4555

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 422 gcgcgcaggggccgggaagcgacgg 446
           ||||||||||||||||| |||||||
Sbjct: 194 gcgcgcaggggccgggaggcgacgg 218
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 456      cggcggcgggtggatctggag 476
                |||||||||||||||||||||
Sbjct: 24905682 cggcggcgggtggatctggag 24905702
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 453      cggcggcggcgggtggatctg 473
                |||||||||||||||||||||
Sbjct: 20559916 cggcggcggcgggtggatctg 20559936



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 443     acggggttgccggcggcggcg 463
               |||||||||||||||||||||
Sbjct: 2836775 acggggttgccggcggcggcg 2836755



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 454     ggcggcggcgggtggatctggagg 477
               |||||||| |||||||||||||||
Sbjct: 5305986 ggcggcggagggtggatctggagg 5306009
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 456      cggcggcgggtggatctggag 476
                |||||||||||||||||||||
Sbjct: 17516273 cggcggcgggtggatctggag 17516253



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 450      tgccggcggcggcgggtgga 469
                ||||||||||||||||||||
Sbjct: 22026975 tgccggcggcggcgggtgga 22026956
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>gb|AC154541.2| Mus musculus BAC clone RP23-458N20 from chromosome 13, complete sequence
          Length = 174991

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 59     cccaaataccaacaaaagagaactg 83
              ||||||||||| |||||||||||||
Sbjct: 163733 cccaaataccagcaaaagagaactg 163757
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>gb|AF269239.1|AF269239 Mus musculus plasmid rescue fragment sequence
          Length = 875

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 92  ctcagtctttctctgacaata 112
           |||||||||||||||||||||
Sbjct: 667 ctcagtctttctctgacaata 647
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 444     cggggttgccggcggcggcgg 464
               |||||||||||||||||||||
Sbjct: 1839010 cggggttgccggcggcggcgg 1839030
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>dbj|AP004465.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0690C12
          Length = 139693

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 456    cggcggcgggtggatctggag 476
              |||||||||||||||||||||
Sbjct: 127118 cggcggcgggtggatctggag 127098
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>dbj|AK073940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076E07, full
           insert sequence
          Length = 1865

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 453 cggcggcggcgggtggatctg 473
           |||||||||||||||||||||
Sbjct: 352 cggcggcggcgggtggatctg 372
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>gb|AC127225.5| Mus musculus BAC clone RP24-499N1 from 3, complete sequence
          Length = 190949

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 69     aacaaaagagaactggaaatgaact 93
              ||||||||||| |||||||||||||
Sbjct: 173932 aacaaaagagagctggaaatgaact 173908
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 453      cggcggcggcgggtggatctg 473
                |||||||||||||||||||||
Sbjct: 20870151 cggcggcggcgggtggatctg 20870171



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 443     acggggttgccggcggcggcg 463
               |||||||||||||||||||||
Sbjct: 2845806 acggggttgccggcggcggcg 2845786



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 454     ggcggcggcgggtggatctggagg 477
               |||||||| |||||||||||||||
Sbjct: 5372463 ggcggcggagggtggatctggagg 5372486
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
              complete sequence
          Length = 170765

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 456    cggcggcgggtggatctggag 476
              |||||||||||||||||||||
Sbjct: 167398 cggcggcgggtggatctggag 167418
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>ref|NM_153550.2| Mus musculus disrupted in renal carcinoma 2 (human) (Dirc2), mRNA
          Length = 4555

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 422 gcgcgcaggggccgggaagcgacgg 446
           ||||||||||||||||| |||||||
Sbjct: 194 gcgcgcaggggccgggaggcgacgg 218
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>ref|XM_482705.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 579

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 450 tgccggcggcggcgggtgga 469
           ||||||||||||||||||||
Sbjct: 541 tgccggcggcggcgggtgga 560
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>gb|AY731532.1| Arachis hypogaea clone PM714 microsatellite sequence
          Length = 299

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 ggggttgccggcggcggcgg 464
           ||||||||||||||||||||
Sbjct: 184 ggggttgccggcggcggcgg 165
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>gb|AC158586.8| Mus musculus chromosome 5, clone RP24-372A2, complete sequence
          Length = 196167

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 70     acaaaagagaactggaaatgaact 93
              ||||| ||||||||||||||||||
Sbjct: 139773 acaaatgagaactggaaatgaact 139750
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>emb|AL135908.13| Human DNA sequence from clone RP1-28O17 on chromosome 6 Contains a
            novel gene, complete sequence
          Length = 148503

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   ctcagtctttctctgacaat 111
            ||||||||||||||||||||
Sbjct: 3911 ctcagtctttctctgacaat 3930
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>gb|AC123518.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0088N01, complete sequence
          Length = 123954

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 454   ggcggcggcgggtggatctggagg 477
             |||||||| |||||||||||||||
Sbjct: 44229 ggcggcggagggtggatctggagg 44206
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>gb|AF451895.1| Zea mays LIGULELESS1 (lg1) gene, complete cds
          Length = 7142

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 445  ggggttgccggcggcggcgg 464
            ||||||||||||||||||||
Sbjct: 3761 ggggttgccggcggcggcgg 3742
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>gb|AC009532.9| Homo sapiens chromosome , clone RP11-58H20, complete sequence
          Length = 165698

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 96     gtctttctctgacaatattatttg 119
              ||||||||||||||| ||||||||
Sbjct: 127234 gtctttctctgacaaaattatttg 127257
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 390    tgcctcttcgtgcgccatcc 409
              ||||||||||||||||||||
Sbjct: 416128 tgcctcttcgtgcgccatcc 416147
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>gb|AE004490.1| Pseudomonas aeruginosa PAO1, section 51 of 529 of the complete genome
          Length = 11445

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 437   gaagcgacggggttgccggcggcg 460
             |||||| |||||||||||||||||
Sbjct: 10105 gaagcgccggggttgccggcggcg 10128
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>gb|AC116535.9| Homo sapiens chromosome 11, clone RP11-685M7, complete sequence
          Length = 192490

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 96   gtctttctctgacaatattatttg 119
            ||||||||||||||| ||||||||
Sbjct: 7946 gtctttctctgacaaaattatttg 7969
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>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1005_H01
          Length = 128124

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 450    tgccggcggcggcgggtgga 469
              ||||||||||||||||||||
Sbjct: 112724 tgccggcggcggcgggtgga 112705
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>dbj|AK069964.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039G05, full
           insert sequence
          Length = 3272

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 454 ggcggcggcgggtggatctggagg 477
           |||||||| |||||||||||||||
Sbjct: 74  ggcggcggagggtggatctggagg 51
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>dbj|AK065326.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F03, full
            insert sequence
          Length = 3579

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 450  tgccggcggcggcgggtgga 469
            ||||||||||||||||||||
Sbjct: 2886 tgccggcggcggcgggtgga 2867
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 390    tgcctcttcgtgcgccatcc 409
              ||||||||||||||||||||
Sbjct: 416128 tgcctcttcgtgcgccatcc 416147
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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 390    tgcctcttcgtgcgccatcc 409
              ||||||||||||||||||||
Sbjct: 149179 tgcctcttcgtgcgccatcc 149198
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>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141089

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 390    tgcctcttcgtgcgccatcc 409
              ||||||||||||||||||||
Sbjct: 130644 tgcctcttcgtgcgccatcc 130625
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>gb|U89496.1|ZMU89496 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds
          Length = 1411

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 ggggttgccggcggcggcgg 464
           ||||||||||||||||||||
Sbjct: 368 ggggttgccggcggcggcgg 349
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>gb|J05100.1|SRAAFPG Sea raven (H.americanus) antifreeze protein type II gene, complete
           cds
          Length = 2420

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 191 cagaaattcactcctttttc 210
           ||||||||||||||||||||
Sbjct: 7   cagaaattcactcctttttc 26


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,078,415
Number of Sequences: 3902068
Number of extensions: 5078415
Number of successful extensions: 104599
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103399
Number of HSP's gapped (non-prelim): 1196
length of query: 503
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 481
effective length of database: 17,147,199,772
effective search space: 8247803090332
effective search space used: 8247803090332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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