Clone Name | rbasd2h14 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_196818.1| Oryza sativa (japonica cultivar-group) putative glutamine synthetase (OSJNBa0018F16.4), mRNA Length = 2739 Score = 252 bits (127), Expect = 1e-63 Identities = 318/382 (83%), Gaps = 6/382 (1%) Strand = Plus / Minus Query: 123 tagtaacggtgaatgagatcgccaaatgccccagggttcttcgagtaatgatcaatctcc 182 ||||||||||||||||||||| | ||||| ||||||||||| ||| ||||| ||||| Sbjct: 2519 tagtaacggtgaatgagatcggcgaatgctgcagggttcttctcgtagtgatcgatctca 2460 Query: 183 gccttgcgtacagcgataacagctgtaataagcttattcccgattagctcatgcaaagtt 242 ||||| |||||||| ||||| || || | ||| |||| ||||| | ||||||| || Sbjct: 2459 gcctttcgtacagcaataacggcagtgacaagtttatcgccgatcaattcatgcatgatt 2400 Query: 243 ttgtctgcagcaagtgattctacagattccagcaagtcctgcggtagccttttgagcttg 302 ||||||||||| |||| ||| |||||||||| |||||||| ||| | ||||||||||||| Sbjct: 2399 ttgtctgcagctagtgcttcgacagattccatcaagtccttcggcatccttttgagcttg 2340 Query: 303 gta------gcataatctgcaggatttgattcaattggttcaggcaactcaaggccgttc 356 | |||||| ||||||| ||||||||| |||||||||||||| ||||| || Sbjct: 2339 gagttggaggcataacctgcagggtttgattcagttggttcaggcaacgtaaggcttctc 2280 Query: 357 ctaagtccatcaatcccagcagcgacaatagcagcaagccccaagtgcggatttgcgcac 416 || |||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||| Sbjct: 2279 ctgagtccatcaatcccagcagcaactatagcagcaaggcccaagtgcgggtttgcgcac 2220 Query: 417 ccatcaaatgatttaatttcgaagttgctgaccatgtcgagaggcacaccaggtgggcat 476 |||| || ||||||||||||||||||||||| | || ||||| | |||||||||||| Sbjct: 2219 gcatcgaaggatttaatttcgaagttgctgacgagatcaagaggtatcccaggtgggcat 2160 Query: 477 gcggttctcaatggagcctccc 498 || ||||||| ||||||||||| Sbjct: 2159 gcagttctcagtggagcctccc 2138
>dbj|AK099882.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111O16, full insert sequence Length = 3106 Score = 252 bits (127), Expect = 1e-63 Identities = 318/382 (83%), Gaps = 6/382 (1%) Strand = Plus / Minus Query: 123 tagtaacggtgaatgagatcgccaaatgccccagggttcttcgagtaatgatcaatctcc 182 ||||||||||||||||||||| | ||||| ||||||||||| ||| ||||| ||||| Sbjct: 2884 tagtaacggtgaatgagatcggcgaatgctgcagggttcttctcgtagtgatcgatctca 2825 Query: 183 gccttgcgtacagcgataacagctgtaataagcttattcccgattagctcatgcaaagtt 242 ||||| |||||||| ||||| || || | ||| |||| ||||| | ||||||| || Sbjct: 2824 gcctttcgtacagcaataacggcagtgacaagtttatcgccgatcaattcatgcatgatt 2765 Query: 243 ttgtctgcagcaagtgattctacagattccagcaagtcctgcggtagccttttgagcttg 302 ||||||||||| |||| ||| |||||||||| |||||||| ||| | ||||||||||||| Sbjct: 2764 ttgtctgcagctagtgcttcgacagattccatcaagtccttcggcatccttttgagcttg 2705 Query: 303 gta------gcataatctgcaggatttgattcaattggttcaggcaactcaaggccgttc 356 | |||||| ||||||| ||||||||| |||||||||||||| ||||| || Sbjct: 2704 gagttggaggcataacctgcagggtttgattcagttggttcaggcaacgtaaggcttctc 2645 Query: 357 ctaagtccatcaatcccagcagcgacaatagcagcaagccccaagtgcggatttgcgcac 416 || |||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||| Sbjct: 2644 ctgagtccatcaatcccagcagcaactatagcagcaaggcccaagtgcgggtttgcgcac 2585 Query: 417 ccatcaaatgatttaatttcgaagttgctgaccatgtcgagaggcacaccaggtgggcat 476 |||| || ||||||||||||||||||||||| | || ||||| | |||||||||||| Sbjct: 2584 gcatcgaaggatttaatttcgaagttgctgacgagatcaagaggtatcccaggtgggcat 2525 Query: 477 gcggttctcaatggagcctccc 498 || ||||||| ||||||||||| Sbjct: 2524 gcagttctcagtggagcctccc 2503
>dbj|AK066867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075P13, full insert sequence Length = 2900 Score = 252 bits (127), Expect = 1e-63 Identities = 318/382 (83%), Gaps = 6/382 (1%) Strand = Plus / Minus Query: 123 tagtaacggtgaatgagatcgccaaatgccccagggttcttcgagtaatgatcaatctcc 182 ||||||||||||||||||||| | ||||| ||||||||||| ||| ||||| ||||| Sbjct: 2678 tagtaacggtgaatgagatcggcgaatgctgcagggttcttctcgtagtgatcgatctca 2619 Query: 183 gccttgcgtacagcgataacagctgtaataagcttattcccgattagctcatgcaaagtt 242 ||||| |||||||| ||||| || || | ||| |||| ||||| | ||||||| || Sbjct: 2618 gcctttcgtacagcaataacggcagtgacaagtttatcgccgatcaattcatgcatgatt 2559 Query: 243 ttgtctgcagcaagtgattctacagattccagcaagtcctgcggtagccttttgagcttg 302 ||||||||||| |||| ||| |||||||||| |||||||| ||| | ||||||||||||| Sbjct: 2558 ttgtctgcagctagtgcttcgacagattccatcaagtccttcggcatccttttgagcttg 2499 Query: 303 gta------gcataatctgcaggatttgattcaattggttcaggcaactcaaggccgttc 356 | |||||| ||||||| ||||||||| |||||||||||||| ||||| || Sbjct: 2498 gagttggaggcataacctgcagggtttgattcagttggttcaggcaacgtaaggcttctc 2439 Query: 357 ctaagtccatcaatcccagcagcgacaatagcagcaagccccaagtgcggatttgcgcac 416 || |||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||| Sbjct: 2438 ctgagtccatcaatcccagcagcaactatagcagcaaggcccaagtgcgggtttgcgcac 2379 Query: 417 ccatcaaatgatttaatttcgaagttgctgaccatgtcgagaggcacaccaggtgggcat 476 |||| || ||||||||||||||||||||||| | || ||||| | |||||||||||| Sbjct: 2378 gcatcgaaggatttaatttcgaagttgctgacgagatcaagaggtatcccaggtgggcat 2319 Query: 477 gcggttctcaatggagcctccc 498 || ||||||| ||||||||||| Sbjct: 2318 gcagttctcagtggagcctccc 2297
>gb|AY835457.1| Saccharum officinarum glutamine synthetase (GSI) mRNA, partial cds Length = 2038 Score = 226 bits (114), Expect = 6e-56 Identities = 291/350 (83%) Strand = Plus / Minus Query: 159 ttcttcgagtaatgatcaatctccgccttgcgtacagcgataacagctgtaataagctta 218 ||||||||| ||||||| ||||| ||||| |||| ||| || ||||||| | ||| ||| Sbjct: 1737 ttcttcgagaaatgatcgatctcagccttccgtatagctatcgcagctgtgacaagttta 1678 Query: 219 ttcccgattagctcatgcaaagttttgtctgcagcaagtgattctacagattccagcaag 278 | || |||| ||||||||| || ||||||| ||||| ||||||||||||| ||| | Sbjct: 1677 tcaccaattaattcatgcaaaaccttatctgcagaaagtgcttctacagattcctgcagg 1618 Query: 279 tcctgcggtagccttttgagcttggtagcataatctgcaggatttgattcaattggttca 338 | |||||||||||| || || |||| ||| | ||| | ||| |||||||||||||||||| Sbjct: 1617 ttctgcggtagcctcttcagtttggaagcgtgatcagaagggtttgattcaattggttca 1558 Query: 339 ggcaactcaaggccgttcctaagtccatcaatcccagcagcgacaatagcagcaagcccc 398 ||||||| |||| | | || || ||||| || || ||||| || ||||||||||| ||| Sbjct: 1557 ggcaacttaaggtctcttcttagcccatcgatgccggcagcaacgatagcagcaagaccc 1498 Query: 399 aagtgcggatttgcgcacccatcaaatgatttaatttcgaagttgctgaccatgtcgaga 458 ||||||||||||||||| ||||| || ||||| || |||||||||||||| | || ||| Sbjct: 1497 aagtgcggatttgcgcagccatcgaaggatttgatctcgaagttgctgactaaatcaaga 1438 Query: 459 ggcacaccaggtgggcatgcggttctcaatggagcctcccggttttcttt 508 |||||||||||||||||||||||||| ||||||||||||| ||| ||||| Sbjct: 1437 ggcacaccaggtgggcatgcggttcttaatggagcctccctgttctcttt 1388
>gb|AY109282.1| Zea mays PCO137630 mRNA sequence Length = 794 Score = 190 bits (96), Expect = 3e-45 Identities = 237/284 (83%) Strand = Plus / Minus Query: 225 attagctcatgcaaagttttgtctgcagcaagtgattctacagattccagcaagtcctgc 284 |||| |||||||||| || ||||||| ||| ||||||||||||||| ||| || |||| Sbjct: 447 attaactcatgcaaaaccttatctgcagaaagcgattctacagattcctgcaggttctgc 388 Query: 285 ggtagccttttgagcttggtagcataatctgcaggatttgattcaattggttcaggcaac 344 ||||||||||| || || | || | ||| | ||| |||||||||||||| ||||| ||| Sbjct: 387 ggtagccttttcagttttgaagagtgatcagaagggtttgattcaattggctcaggtaac 328 Query: 345 tcaaggccgttcctaagtccatcaatcccagcagcgacaatagcagcaagccccaagtgc 404 | |||| | || || ||||| || |||||||| || ||||||||||| ||||||||| Sbjct: 327 ttaaggtgtcttcttagcccatcgatgccagcagctacgatagcagcaagacccaagtgc 268 Query: 405 ggatttgcgcacccatcaaatgatttaatttcgaagttgctgaccatgtcgagaggcaca 464 ||||||||||| ||||| || ||||| || |||||||||||||| | || ||||||||| Sbjct: 267 ggatttgcgcaaccatcgaaggatttgatctcgaagttgctgactaaatcaagaggcaca 208 Query: 465 ccaggtgggcatgcggttctcaatggagcctcccggttttcttt 508 |||||||||||||||||||| ||||||||||||| ||| ||||| Sbjct: 207 ccaggtgggcatgcggttcttaatggagcctccctgttctcttt 164
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 159 bits (80), Expect = 1e-35 Identities = 146/168 (86%) Strand = Plus / Minus Query: 331 ttggttcaggcaactcaaggccgttcctaagtccatcaatcccagcagcgacaatagcag 390 |||||||||||||| ||||| |||| |||||||||||||||||||| || ||||||| Sbjct: 57435 ttggttcaggcaacgtaaggcttctcctgagtccatcaatcccagcagcaactatagcag 57376 Query: 391 caagccccaagtgcggatttgcgcacccatcaaatgatttaatttcgaagttgctgacca 450 |||| ||||||||||| ||||||||| |||| || ||||||||||||||||||||||| | Sbjct: 57375 caaggcccaagtgcgggtttgcgcacgcatcgaaggatttaatttcgaagttgctgacga 57316 Query: 451 tgtcgagaggcacaccaggtgggcatgcggttctcaatggagcctccc 498 || ||||| | |||||||||||||| ||||||| ||||||||||| Sbjct: 57315 gatcaagaggtatcccaggtgggcatgcagttctcagtggagcctccc 57268 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 241 ttttgtctgcagcaagtgattctacagattccagcaagtcctgcggtagccttttgagct 300 ||||||||||||| |||| ||| |||||||||| |||||||| ||| | ||||||||||| Sbjct: 57765 ttttgtctgcagctagtgcttcgacagattccatcaagtccttcggcatccttttgagct 57706 Query: 301 tgg 303 ||| Sbjct: 57705 tgg 57703 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 123 tagtaacggtgaatgagatcgccaaatgccccagggttcttcgagtaatgatcaatctcc 182 ||||||||||||||||||||| | ||||| ||||||||||| ||| ||||| ||||| Sbjct: 57992 tagtaacggtgaatgagatcggcgaatgctgcagggttcttctcgtagtgatcgatctca 57933 Query: 183 gcct 186 |||| Sbjct: 57932 gcct 57929
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 159 bits (80), Expect = 1e-35 Identities = 146/168 (86%) Strand = Plus / Minus Query: 331 ttggttcaggcaactcaaggccgttcctaagtccatcaatcccagcagcgacaatagcag 390 |||||||||||||| ||||| |||| |||||||||||||||||||| || ||||||| Sbjct: 16178546 ttggttcaggcaacgtaaggcttctcctgagtccatcaatcccagcagcaactatagcag 16178487 Query: 391 caagccccaagtgcggatttgcgcacccatcaaatgatttaatttcgaagttgctgacca 450 |||| ||||||||||| ||||||||| |||| || ||||||||||||||||||||||| | Sbjct: 16178486 caaggcccaagtgcgggtttgcgcacgcatcgaaggatttaatttcgaagttgctgacga 16178427 Query: 451 tgtcgagaggcacaccaggtgggcatgcggttctcaatggagcctccc 498 || ||||| | |||||||||||||| ||||||| ||||||||||| Sbjct: 16178426 gatcaagaggtatcccaggtgggcatgcagttctcagtggagcctccc 16178379 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 241 ttttgtctgcagcaagtgattctacagattccagcaagtcctgcggtagccttttgagct 300 ||||||||||||| |||| ||| |||||||||| |||||||| ||| | ||||||||||| Sbjct: 16178876 ttttgtctgcagctagtgcttcgacagattccatcaagtccttcggcatccttttgagct 16178817 Query: 301 tgg 303 ||| Sbjct: 16178816 tgg 16178814 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 123 tagtaacggtgaatgagatcgccaaatgccccagggttcttcgagtaatgatcaatctcc 182 ||||||||||||||||||||| | ||||| ||||||||||| ||| ||||| ||||| Sbjct: 16179103 tagtaacggtgaatgagatcggcgaatgctgcagggttcttctcgtagtgatcgatctca 16179044 Query: 183 gcct 186 |||| Sbjct: 16179043 gcct 16179040
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 159 bits (80), Expect = 1e-35 Identities = 146/168 (86%) Strand = Plus / Minus Query: 331 ttggttcaggcaactcaaggccgttcctaagtccatcaatcccagcagcgacaatagcag 390 |||||||||||||| ||||| |||| |||||||||||||||||||| || ||||||| Sbjct: 16186787 ttggttcaggcaacgtaaggcttctcctgagtccatcaatcccagcagcaactatagcag 16186728 Query: 391 caagccccaagtgcggatttgcgcacccatcaaatgatttaatttcgaagttgctgacca 450 |||| ||||||||||| ||||||||| |||| || ||||||||||||||||||||||| | Sbjct: 16186727 caaggcccaagtgcgggtttgcgcacgcatcgaaggatttaatttcgaagttgctgacga 16186668 Query: 451 tgtcgagaggcacaccaggtgggcatgcggttctcaatggagcctccc 498 || ||||| | |||||||||||||| ||||||| ||||||||||| Sbjct: 16186667 gatcaagaggtatcccaggtgggcatgcagttctcagtggagcctccc 16186620 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 241 ttttgtctgcagcaagtgattctacagattccagcaagtcctgcggtagccttttgagct 300 ||||||||||||| |||| ||| |||||||||| |||||||| ||| | ||||||||||| Sbjct: 16187117 ttttgtctgcagctagtgcttcgacagattccatcaagtccttcggcatccttttgagct 16187058 Query: 301 tgg 303 ||| Sbjct: 16187057 tgg 16187055 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 123 tagtaacggtgaatgagatcgccaaatgccccagggttcttcgagtaatgatcaatctcc 182 ||||||||||||||||||||| | ||||| ||||||||||| ||| ||||| ||||| Sbjct: 16187344 tagtaacggtgaatgagatcggcgaatgctgcagggttcttctcgtagtgatcgatctca 16187285 Query: 183 gcct 186 |||| Sbjct: 16187284 gcct 16187281
>emb|AJ238212.1|MTR238212 Medicago truncatula mRNA for glutamine synthetase I Length = 1734 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 158 gttcttcgagtaatgatcaatctccgcctt 187 ||||||||||||||||||||| || ||||| Sbjct: 1371 gttcttcgagtaatgatcaatttcagcctt 1342
>gb|DQ059188.1| Neriacanthus purdieanus ribosomal protein S16 (rps16) gene, intron; chloroplast Length = 747 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 aaatgatttaatttcgaagtt 442 ||||||||||||||||||||| Sbjct: 706 aaatgatttaatttcgaagtt 686
>gb|AC074032.24| Homo sapiens 12 BAC RP4-605O3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 40346 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctttattattaactgaaaaac 21 ||||||||||||||||||||| Sbjct: 18152 ctttattattaactgaaaaac 18132
>emb|BX000468.5| Zebrafish DNA sequence from clone DKEY-1J5 in linkage group 20, complete sequence Length = 208583 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 gttcttcgagtaatgatcaat 178 ||||||||||||||||||||| Sbjct: 41288 gttcttcgagtaatgatcaat 41268
>emb|CR956368.6| M.truncatula DNA sequence from clone MTH2-64D19 on chromosome 3, complete sequence Length = 139040 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 gttcttcgagtaatgatcaat 178 ||||||||||||||||||||| Sbjct: 115886 gttcttcgagtaatgatcaat 115866 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 158 gttcttcgagtaatgatcaatctccgccttgc 189 |||||||||||| |||||||| || ||||||| Sbjct: 49453 gttcttcgagtattgatcaatttcagccttgc 49484
>ref|NM_189656.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1800 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 taatctgcaggatttgattcaatt 332 |||||||||||||||||| ||||| Sbjct: 1483 taatctgcaggatttgatgcaatt 1460
>gb|BC077527.1| Xenopus laevis MGC83232 protein, mRNA (cDNA clone MGC:83232 IMAGE:6635692), complete cds Length = 2151 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ttttgagcttggtagcataa 311 |||||||||||||||||||| Sbjct: 1354 ttttgagcttggtagcataa 1373
>gb|BC077521.1| Xenopus laevis MGC83098 protein, mRNA (cDNA clone MGC:83098 IMAGE:6317431), complete cds Length = 2083 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ttttgagcttggtagcataa 311 |||||||||||||||||||| Sbjct: 1295 ttttgagcttggtagcataa 1314
>gb|BC042872.1| Homo sapiens transmembrane protein 26, mRNA (cDNA clone MGC:35010 IMAGE:5164050), complete cds Length = 2581 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tttgagcttggtagcataat 312 |||||||||||||||||||| Sbjct: 1541 tttgagcttggtagcataat 1522
>ref|XM_590478.2| PREDICTED: Bos taurus similar to RIKEN cDNA 6430402H13 gene (LOC512879), mRNA Length = 1630 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 cagcagcgacaatagcagca 392 |||||||||||||||||||| Sbjct: 42 cagcagcgacaatagcagca 23
>dbj|AK124367.1| Homo sapiens cDNA FLJ42376 fis, clone UTERU2035323 Length = 2342 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tttgagcttggtagcataat 312 |||||||||||||||||||| Sbjct: 169 tttgagcttggtagcataat 150
>gb|AC068892.7| Homo sapiens chromosome 10 clone RP11-116D21, complete sequence Length = 161178 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tttgagcttggtagcataat 312 |||||||||||||||||||| Sbjct: 24057 tttgagcttggtagcataat 24038
>gb|AC080166.6| Homo sapiens BAC clone RP11-813C7 from 2, complete sequence Length = 179961 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 gacaatagcagcaagcccca 399 |||||||||||||||||||| Sbjct: 139154 gacaatagcagcaagcccca 139135
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 367 caatcccagcagcgacaatagcagcaag 394 ||||| |||||||| ||||||||||||| Sbjct: 637612 caatcacagcagcggcaatagcagcaag 637639
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cagcagcgacaatagcagca 392 |||||||||||||||||||| Sbjct: 745791 cagcagcgacaatagcagca 745810
>emb|AL732317.13| Mouse DNA sequence from clone RP23-139F8 on chromosome 2, complete sequence Length = 222471 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 gaaaaacacgcaaattagtcatga 38 |||||||||||||||||| ||||| Sbjct: 93874 gaaaaacacgcaaattagccatga 93851 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,092,738 Number of Sequences: 3902068 Number of extensions: 4092738 Number of successful extensions: 66126 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66017 Number of HSP's gapped (non-prelim): 98 length of query: 510 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 488 effective length of database: 17,147,199,772 effective search space: 8367833488736 effective search space used: 8367833488736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)