Clone Name | rbasd2h09 |
---|---|
Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 121 bits (304), Expect(2) = 4e-47 Identities = 59/59 (100%), Positives = 59/59 (100%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 370 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG Sbjct: 369 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427 Score = 86.3 bits (212), Expect(2) = 4e-47 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -2 Query: 322 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 209 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 97.8 bits (242), Expect(2) = 4e-34 Identities = 46/59 (77%), Positives = 53/59 (89%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 370 GP +FEQPKMT++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG Sbjct: 379 GPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437 Score = 66.6 bits (161), Expect(2) = 4e-34 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = -2 Query: 325 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 209 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 94.4 bits (233), Expect(2) = 2e-33 Identities = 44/59 (74%), Positives = 52/59 (88%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 370 GP FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+ G+FYG Sbjct: 379 GPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437 Score = 67.8 bits (164), Expect(2) = 2e-33 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = -2 Query: 322 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 209 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 94.0 bits (232), Expect(2) = 3e-32 Identities = 43/59 (72%), Positives = 53/59 (89%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 370 GP FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+ G+F+G Sbjct: 377 GPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435 Score = 63.9 bits (154), Expect(2) = 3e-32 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = -2 Query: 322 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 215 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 105 bits (262), Expect = 8e-23 Identities = 48/59 (81%), Positives = 55/59 (93%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 370 GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG Sbjct: 366 GPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 105 bits (261), Expect = 1e-22 Identities = 49/59 (83%), Positives = 55/59 (93%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 370 GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG Sbjct: 379 GPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 102 bits (254), Expect = 7e-22 Identities = 47/59 (79%), Positives = 55/59 (93%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 370 GP FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 369 GPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 101 bits (251), Expect = 2e-21 Identities = 46/58 (79%), Positives = 55/58 (94%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 373 GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+ Sbjct: 375 GPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 97.8 bits (242), Expect = 2e-20 Identities = 45/57 (78%), Positives = 54/57 (94%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 376 GP TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F Sbjct: 379 GPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 97.8 bits (242), Expect = 2e-20 Identities = 46/57 (80%), Positives = 53/57 (92%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 376 GP TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F Sbjct: 383 GPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 97.1 bits (240), Expect = 3e-20 Identities = 45/58 (77%), Positives = 52/58 (89%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 373 GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+ GSF+ Sbjct: 383 GPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 94.0 bits (232), Expect = 3e-19 Identities = 44/55 (80%), Positives = 51/55 (92%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 382 GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 378 GPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 93.2 bits (230), Expect = 4e-19 Identities = 41/58 (70%), Positives = 56/58 (96%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 373 GP TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 381 GPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 89.7 bits (221), Expect = 5e-18 Identities = 41/58 (70%), Positives = 53/58 (91%) Frame = -3 Query: 546 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 373 GP TF+QPKMT++KLL Y MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 383 GPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 58.2 bits (139), Expect = 2e-08 Identities = 26/33 (78%), Positives = 31/33 (93%) Frame = -3 Query: 543 PVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 445 P TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L Sbjct: 377 PPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/42 (52%), Positives = 28/42 (66%) Frame = -3 Query: 540 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 415 V + M + L++YG LV EQ+NVKRVQLAD Y+S A L Sbjct: 353 VAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394
>ACSL4_MOUSE (Q9QUJ7) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 4) (LACS 4) (mACS4) Length = 711 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = -2 Query: 130 VNISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLLCCKQN 5 +N+ LN+L+I + P+HLLI +S F+ W L K+N Sbjct: 1 MNLKLNVLTIILL--PVHLLITIYSALIFIPWYFLTNAKKKN 40
>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)| (EF-1AO) (42S p48) Length = 461 Score = 31.6 bits (70), Expect = 1.5 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = -3 Query: 540 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 385 VTF +T E K +E H +QE NVK + + D A N M+ Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337 Query: 384 GSFYG*KILHTHPPSLAA 331 GSF I+ HP ++A Sbjct: 338 GSFTAQVIILNHPGQISA 355
>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor| Length = 1346 Score = 30.0 bits (66), Expect = 4.5 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 437 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 541 + +SC+R TL T CP SS +TVI+ C ++ Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453
>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)| Length = 464 Score = 30.0 bits (66), Expect = 4.5 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Frame = -3 Query: 540 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 385 VTF +T E K +E H +QE NVK + + D A N A +T Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337 Query: 384 GSFYG*KILHTHPPSLAA 331 F I+ HP ++A Sbjct: 338 KMFTAQVIIMNHPGQISA 355
>L2GL2_HUMAN (Q6P1M3) Lethal(2) giant larvae protein homolog 2 (HGL)| Length = 1020 Score = 29.6 bits (65), Expect = 5.9 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2 Query: 94 WQRPIHLLIICHSQYSFLQW 35 WQR LL+ CHS S+ QW Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257
>L2GL2_PONPY (Q5RCX2) Lethal(2) giant larvae protein homolog 2| Length = 1019 Score = 29.6 bits (65), Expect = 5.9 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2 Query: 94 WQRPIHLLIICHSQYSFLQW 35 WQR LL+ CHS S+ QW Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257
>ACSL4_HUMAN (O60488) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 4) (LACS 4) Length = 711 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -2 Query: 130 VNISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLLCCKQN 5 + + LN+L+I + P+HLLI +S F+ W L K+N Sbjct: 1 MKLKLNVLTIILL--PVHLLITIYSALIFIPWYFLTNAKKKN 40
>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)| Length = 462 Score = 29.3 bits (64), Expect = 7.7 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%) Frame = -3 Query: 540 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 385 VTF +T E K +E H + E NVK V + D A N M+ Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337 Query: 384 GSFYG*KILHTHPPSLAA 331 GSF I+ HP + A Sbjct: 338 GSFTAQVIILNHPGQIGA 355
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 28.9 bits (63), Expect = 10.0 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = -2 Query: 382 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 224 F L + N PT S GGG G ++ T P G D N +D DG+ Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80
>OXYR_MACMU (P56494) Oxytocin receptor (OT-R)| Length = 389 Score = 28.9 bits (63), Expect = 10.0 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = -2 Query: 184 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLL 20 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLAACYGLISFKIWQNLRL 233
>OXYR_HUMAN (P30559) Oxytocin receptor (OT-R)| Length = 389 Score = 28.9 bits (63), Expect = 10.0 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = -2 Query: 184 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLL 20 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLATCYGLISFKIWQNLRL 233
>OXYR_PIG (P32306) Oxytocin receptor (OT-R)| Length = 386 Score = 28.9 bits (63), Expect = 10.0 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = -2 Query: 184 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLL 20 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLAACYGLISFKIWQNLRL 233
>OXYR_SHEEP (Q28756) Oxytocin receptor (OT-R)| Length = 391 Score = 28.9 bits (63), Expect = 10.0 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = -2 Query: 184 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLL 20 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLAACYGLISFKIWQNLRL 233
>OXYR_BOVIN (P56449) Oxytocin receptor (OT-R)| Length = 391 Score = 28.9 bits (63), Expect = 10.0 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = -2 Query: 184 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLL 20 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLATCYGLISFKIWQNLRL 233
>EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1)| (EF-1AO1) Length = 461 Score = 28.9 bits (63), Expect = 10.0 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Frame = -3 Query: 540 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 385 VTF +T E K +E H + E NVK + + D A N M+ Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337 Query: 384 GSFYG*KILHTHPPSLAA 331 GSF I+ HP ++A Sbjct: 338 GSFTAQVIILNHPGQISA 355 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,180,592 Number of Sequences: 219361 Number of extensions: 1600146 Number of successful extensions: 4254 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 4094 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4253 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)