ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2h08 |
|---|---|
| Clone Library Name | barley_pub |
>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 287 Score = 119 bits (297), Expect(2) = 7e-31 Identities = 62/92 (67%), Positives = 68/92 (73%) Frame = -2 Query: 413 FFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQAXXXXXXXX 234 FFAVGLFRLLEL+NATEPT+LDKLCAALNINK+SVDRDLDVYRN+LSKLVQA Sbjct: 196 FFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYV 255 Query: 233 XXXXXXXXXXXETPKPNEAVAKFDGSTYPLKH 138 ETPK NEAV KFDGS ++H Sbjct: 256 EREKKKREERSETPKSNEAVTKFDGSLNSMRH 287 Score = 33.9 bits (76), Expect(2) = 7e-31 Identities = 15/17 (88%), Positives = 17/17 (100%) Frame = -3 Query: 478 ESILKDISERAQGKGNF 428 E+ILKDISERAQGKG+F Sbjct: 175 EAILKDISERAQGKGSF 191
>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 300 Score = 101 bits (251), Expect = 1e-21 Identities = 54/87 (62%), Positives = 62/87 (71%) Frame = -2 Query: 413 FFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQAXXXXXXXX 234 FFAVGLFRLLEL++AT+PTVLDKLCA+LNINKKSVDRDLDVYRNLLSKLVQA Sbjct: 202 FFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYV 261 Query: 233 XXXXXXXXXXXETPKPNEAVAKFDGST 153 ++ K NE ++K G T Sbjct: 262 EREKKKQGERAQSQKANETISKCLGDT 288
>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 293 Score = 94.4 bits (233), Expect = 1e-19 Identities = 45/51 (88%), Positives = 50/51 (98%) Frame = -2 Query: 410 FAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 258 FAVGLFRLLEL+N T+PT+L+KLCAALN+NKKSVDRDLDVYRNLLSKLVQA Sbjct: 204 FAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQA 254
>THF1_ANAVT (Q3M4B2) Protein thf1| Length = 233 Score = 38.1 bits (87), Expect = 0.012 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%) Frame = -2 Query: 410 FAVGLFRLLELSNAT-------EPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 258 FA+GLF LLE SN L + A L+++ + +DL++YR+ L K+ QA Sbjct: 145 FAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLSDDKLSKDLELYRSNLDKMTQA 202
>THF1_ANASP (Q8YZ41) Protein thf1| Length = 233 Score = 37.7 bits (86), Expect = 0.016 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 7/58 (12%) Frame = -2 Query: 410 FAVGLFRLLELSNAT-------EPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 258 FA+GLF LLE SN L + A L+++ +DL++YR+ L K+ QA Sbjct: 145 FAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLSDDKFSKDLELYRSNLDKMTQA 202
>THF1_SYNP7 (Q31MY4) Protein thf1| Length = 254 Score = 32.0 bits (71), Expect = 0.87 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 7/58 (12%) Frame = -2 Query: 410 FAVGLFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNLLSKLVQA 258 FA+GLF LLE + +P L A+ ++ + +DLD+YR+ L K+ QA Sbjct: 146 FAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSNLEKMEQA 203
>THF1_SYNP6 (Q5N664) Protein thf1| Length = 254 Score = 32.0 bits (71), Expect = 0.87 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 7/58 (12%) Frame = -2 Query: 410 FAVGLFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNLLSKLVQA 258 FA+GLF LLE + +P L A+ ++ + +DLD+YR+ L K+ QA Sbjct: 146 FAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSNLEKMEQA 203
>THF1_SYNEL (Q8DJT8) Protein thf1| Length = 222 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 5/55 (9%) Frame = -2 Query: 407 AVGLFRLLELSNATEPTV-----LDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 258 AVGL+ L+ A E T+ LD+L + + + V RDL++YR+ L K+ QA Sbjct: 136 AVGLYAFLQ-ELAGEVTIHLNETLDQLAPVIPLPIEKVKRDLELYRSNLDKINQA 189
>GFAP_HUMAN (P14136) Glial fibrillary acidic protein, astrocyte (GFAP)| Length = 432 Score = 30.4 bits (67), Expect = 2.5 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = -1 Query: 369 DGANRTGQALRCSKHQ*K--KRG*RP*RLPQLTVEIGSSQGTS*GIRREGKEEESREIGD 196 D A R + LR +KH+ +R +L LT ++ S +GT+ + R+ +E+E R + + Sbjct: 266 DAAARNAELLRQAKHEANDYRR-----QLQSLTCDLESLRGTNESLERQMREQEERHVRE 320 Query: 195 A 193 A Sbjct: 321 A 321
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 3.3 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -2 Query: 98 QILTVIH-LDSVENYRGHLWLLLAWCSTR 15 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 3.3 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -2 Query: 98 QILTVIH-LDSVENYRGHLWLLLAWCSTR 15 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 3.3 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -2 Query: 98 QILTVIH-LDSVENYRGHLWLLLAWCSTR 15 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>VNUC_MABVM (P27588) Nucleoprotein (Nucleocapsid protein)| Length = 692 Score = 28.9 bits (63), Expect = 7.3 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -2 Query: 134 LNLSPEESLSG*QILTVIHLDSVENYRGHLWLLLAWCS 21 L++SP E IL + L+S E+ RG + L L++CS Sbjct: 100 LDVSPNEPHYSPLILALKTLESTESQRGRIGLFLSFCS 137
>THF1_SYNY3 (P73956) Protein thf1| Length = 240 Score = 28.9 bits (63), Expect = 7.3 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%) Frame = -2 Query: 410 FAVGLFRLL-----ELSNATEPT--VLDKLCAALNINKKSVDRDLDVYRNLLSKLVQ 261 FA+GL+ LL E+ + E L +L L+++ V +DLD+YR+ L K+ Q Sbjct: 144 FAIGLYTLLADQDPEVKDNDEKRQDYLTRLSELLDLSLDKVVKDLDLYRSNLEKVDQ 200
>GFAP_MOUSE (P03995) Glial fibrillary acidic protein, astrocyte (GFAP)| Length = 430 Score = 28.5 bits (62), Expect = 9.6 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Frame = -1 Query: 369 DGANRTGQALRCSKHQ*K--KRG*RP*RLPQLTVEIGSSQGTS*GIRREGKEEESR 208 D A+R + LR +KH+ +R +L LT ++ S +GT+ + R+ +E+E R Sbjct: 263 DAASRNAELLRQAKHEANDYRR-----QLQALTCDLESLRGTNESLERQMREQEER 313
>ATM_SCHPO (O74630) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase tel1) (Telomere length regulation protein 1) (ATM homolog) Length = 2812 Score = 28.5 bits (62), Expect = 9.6 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Frame = -1 Query: 234 REGKEEESREIGDAQAERGCCKIRWK---HLSLEALTQPFPRGELVRITDINSY 82 R+ K + + G+++AER K+R K LS+EA GEL+RI SY Sbjct: 2752 RDPKIQRNNVSGESEAERAILKVRQKLSSTLSVEASV-----GELIRIAQDPSY 2800 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,093,693 Number of Sequences: 219361 Number of extensions: 1067214 Number of successful extensions: 2788 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2754 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2783 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
