Clone Name | rbasd2h01 |
---|---|
Clone Library Name | barley_pub |
>ECP_PANTR (P47780) Eosinophil cationic protein precursor (EC 3.1.27.-) (ECP)| (Ribonuclease 3) (RNase 3) Length = 160 Score = 30.4 bits (67), Expect = 1.2 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Frame = +3 Query: 105 MNHFLQTPPN-----RVCNTSY*M*CKNEMQLKRRYTSNVINLKTKLAHVCAHQKHIQIC 269 + H PP RV N +Y CKN+ R +NV+N+ + C H + + C Sbjct: 40 IQHISLNPPRCTIAMRVIN-NYRWRCKNQNTFLRTTFANVVNVCGNQSIRCPHNRTLNNC 98 Query: 270 TDW*YITELIHIDL 311 + L+H DL Sbjct: 99 HQSRFRVPLLHCDL 112
>ECP_GORGO (P47778) Eosinophil cationic protein precursor (EC 3.1.27.-) (ECP)| (Ribonuclease 3) (RNase 3) Length = 160 Score = 29.6 bits (65), Expect = 2.0 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Frame = +3 Query: 105 MNHFLQTPPN-----RVCNTSY*M*CKNEMQLKRRYTSNVINLKTKLAHVCAHQKHIQIC 269 + H PP RV N +Y CKN+ R +NV+N+ + C H + + C Sbjct: 40 IQHISLNPPRCTIAMRVIN-NYRWRCKNQNTFLRTTFANVVNVCGNQSIRCLHNRTLNNC 98 Query: 270 TDW*YITELIHIDL 311 + L+H DL Sbjct: 99 HRSRFRVPLLHCDL 112
>MSH3_ARATH (O65607) DNA mismatch repair protein MSH3 (AtMsh3)| Length = 1081 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -2 Query: 126 ESEENGSSCCTTHQIKKMVHLAAQPI 49 E+ E G SC T H I M HL Q + Sbjct: 364 EAAEKGMSCLTVHTIMNMPHLTVQAL 389
>THIL_SALTY (P55881) Thiamine-monophosphate kinase (EC 2.7.4.16)| (Thiamine-phosphate kinase) Length = 325 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 31 ACILLSDGLCSKMNHFLYLMGCAAR 105 A I LSDGL S + H + GC AR Sbjct: 209 AAIDLSDGLISDLGHIVKASGCGAR 233
>ECP_HUMAN (P12724) Eosinophil cationic protein precursor (EC 3.1.27.-) (ECP)| (Ribonuclease 3) (RNase 3) Length = 160 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/49 (28%), Positives = 23/49 (46%) Frame = +3 Query: 165 CKNEMQLKRRYTSNVINLKTKLAHVCAHQKHIQICTDW*YITELIHIDL 311 CKN+ R +NV+N+ + C H + + C + L+H DL Sbjct: 64 CKNQNTFLRTTFANVVNVCGNQSIRCPHNRTLNNCHRSRFRVPLLHCDL 112
>PNS1_ASPFU (Q4WYG7) Protein pns1| Length = 537 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/51 (27%), Positives = 26/51 (50%) Frame = -1 Query: 217 KLITLLVYLLFSCISFLHYI**EVLHTLFGGV*RKWFILLHNPSDKENGSS 65 ++I L+VY+ F+ F ++ +HT GV W+ +P+ GS+ Sbjct: 277 RVIGLVVYVTFAMYWFSEWLK-NTIHTTIAGVYGSWYFWSQSPNGMPRGST 326
>AMA1_PLAFG (P50490) Apical membrane antigen 1 precursor (Merozoite surface| antigen) Length = 622 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = -2 Query: 153 RRCCILYLEESEENGSSCCTTHQIKKMVHLAAQPIR*KYTSN 28 ++C ILY+ E NG C Q K+ +P + K N Sbjct: 245 KKCHILYIAAQENNGPRYCNKDQSKRNSMFCFRPAKDKLFEN 286
>RS5_PODCA (Q08364) 40S ribosomal protein S5| Length = 210 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +1 Query: 10 PLSGTLIACILLSDGLCSKMNHFLYLMGCAAR 105 PL G I+ I L+D + K NH +YL AAR Sbjct: 30 PLEGLNISDISLTDYIAVKDNHAVYLPHTAAR 61
>HAS2_XENLA (O57427) Hyaluronan synthase 2 (EC 2.4.1.212) (Hyaluronate synthase| 2) (Hyaluronic acid synthase 2) (HA synthase 2) (xHAS2) Length = 551 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -3 Query: 170 FTLHLVGGVAYSIWRSLKK 114 FT+ L+GGV Y+IWR KK Sbjct: 485 FTI-LLGGVCYTIWRETKK 502 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,267,113 Number of Sequences: 219361 Number of extensions: 843823 Number of successful extensions: 1677 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1619 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1671 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)