ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ECP_PANTR (P47780) Eosinophil cationic protein precursor (EC 3.1... 30 1.2
2ECP_GORGO (P47778) Eosinophil cationic protein precursor (EC 3.1... 30 2.0
3MSH3_ARATH (O65607) DNA mismatch repair protein MSH3 (AtMsh3) 29 3.4
4THIL_SALTY (P55881) Thiamine-monophosphate kinase (EC 2.7.4.16) ... 28 5.8
5ECP_HUMAN (P12724) Eosinophil cationic protein precursor (EC 3.1... 28 5.8
6PNS1_ASPFU (Q4WYG7) Protein pns1 28 7.6
7AMA1_PLAFG (P50490) Apical membrane antigen 1 precursor (Merozoi... 28 7.6
8RS5_PODCA (Q08364) 40S ribosomal protein S5 27 9.9
9HAS2_XENLA (O57427) Hyaluronan synthase 2 (EC 2.4.1.212) (Hyalur... 27 9.9

>ECP_PANTR (P47780) Eosinophil cationic protein precursor (EC 3.1.27.-) (ECP)|
           (Ribonuclease 3) (RNase 3)
          Length = 160

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = +3

Query: 105 MNHFLQTPPN-----RVCNTSY*M*CKNEMQLKRRYTSNVINLKTKLAHVCAHQKHIQIC 269
           + H    PP      RV N +Y   CKN+    R   +NV+N+    +  C H + +  C
Sbjct: 40  IQHISLNPPRCTIAMRVIN-NYRWRCKNQNTFLRTTFANVVNVCGNQSIRCPHNRTLNNC 98

Query: 270 TDW*YITELIHIDL 311
               +   L+H DL
Sbjct: 99  HQSRFRVPLLHCDL 112



to top

>ECP_GORGO (P47778) Eosinophil cationic protein precursor (EC 3.1.27.-) (ECP)|
           (Ribonuclease 3) (RNase 3)
          Length = 160

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = +3

Query: 105 MNHFLQTPPN-----RVCNTSY*M*CKNEMQLKRRYTSNVINLKTKLAHVCAHQKHIQIC 269
           + H    PP      RV N +Y   CKN+    R   +NV+N+    +  C H + +  C
Sbjct: 40  IQHISLNPPRCTIAMRVIN-NYRWRCKNQNTFLRTTFANVVNVCGNQSIRCLHNRTLNNC 98

Query: 270 TDW*YITELIHIDL 311
               +   L+H DL
Sbjct: 99  HRSRFRVPLLHCDL 112



to top

>MSH3_ARATH (O65607) DNA mismatch repair protein MSH3 (AtMsh3)|
          Length = 1081

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 126 ESEENGSSCCTTHQIKKMVHLAAQPI 49
           E+ E G SC T H I  M HL  Q +
Sbjct: 364 EAAEKGMSCLTVHTIMNMPHLTVQAL 389



to top

>THIL_SALTY (P55881) Thiamine-monophosphate kinase (EC 2.7.4.16)|
           (Thiamine-phosphate kinase)
          Length = 325

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 31  ACILLSDGLCSKMNHFLYLMGCAAR 105
           A I LSDGL S + H +   GC AR
Sbjct: 209 AAIDLSDGLISDLGHIVKASGCGAR 233



to top

>ECP_HUMAN (P12724) Eosinophil cationic protein precursor (EC 3.1.27.-) (ECP)|
           (Ribonuclease 3) (RNase 3)
          Length = 160

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 165 CKNEMQLKRRYTSNVINLKTKLAHVCAHQKHIQICTDW*YITELIHIDL 311
           CKN+    R   +NV+N+    +  C H + +  C    +   L+H DL
Sbjct: 64  CKNQNTFLRTTFANVVNVCGNQSIRCPHNRTLNNCHRSRFRVPLLHCDL 112



to top

>PNS1_ASPFU (Q4WYG7) Protein pns1|
          Length = 537

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 217 KLITLLVYLLFSCISFLHYI**EVLHTLFGGV*RKWFILLHNPSDKENGSS 65
           ++I L+VY+ F+   F  ++    +HT   GV   W+    +P+    GS+
Sbjct: 277 RVIGLVVYVTFAMYWFSEWLK-NTIHTTIAGVYGSWYFWSQSPNGMPRGST 326



to top

>AMA1_PLAFG (P50490) Apical membrane antigen 1 precursor (Merozoite surface|
           antigen)
          Length = 622

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 153 RRCCILYLEESEENGSSCCTTHQIKKMVHLAAQPIR*KYTSN 28
           ++C ILY+   E NG   C   Q K+      +P + K   N
Sbjct: 245 KKCHILYIAAQENNGPRYCNKDQSKRNSMFCFRPAKDKLFEN 286



to top

>RS5_PODCA (Q08364) 40S ribosomal protein S5|
          Length = 210

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 10  PLSGTLIACILLSDGLCSKMNHFLYLMGCAAR 105
           PL G  I+ I L+D +  K NH +YL   AAR
Sbjct: 30  PLEGLNISDISLTDYIAVKDNHAVYLPHTAAR 61



to top

>HAS2_XENLA (O57427) Hyaluronan synthase 2 (EC 2.4.1.212) (Hyaluronate synthase|
           2) (Hyaluronic acid synthase 2) (HA synthase 2) (xHAS2)
          Length = 551

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 170 FTLHLVGGVAYSIWRSLKK 114
           FT+ L+GGV Y+IWR  KK
Sbjct: 485 FTI-LLGGVCYTIWRETKK 502


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,267,113
Number of Sequences: 219361
Number of extensions: 843823
Number of successful extensions: 1677
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top