ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC151756.2| Ornithorhynchus anatinus chromosome UNK clone OAB... 44 0.27
2gb|AC073095.4| Homo sapiens BAC clone RP11-384A20 from 7, comple... 42 1.1
3emb|AL592504.6| Human DNA sequence from clone RP11-320J16 on chr... 42 1.1
4gb|AC118465.2| Homo sapiens chromosome 5 clone RP11-950K24, comp... 42 1.1
5gb|AC118554.2| Homo sapiens chromosome 1 clone RP11-61E2, comple... 42 1.1
6gb|AC007839.4|AC007839 Drosophila melanogaster, chromosome 2R, r... 42 1.1
7gb|AE003797.3| Drosophila melanogaster chromosome 2R, section 53... 42 1.1
8emb|CT476806.2| Pan troglodytes chromosome X BAC RP43-032D14, co... 42 1.1
9ref|NM_111083.2| Arabidopsis thaliana unknown protein AT3G02160 ... 40 4.2
10gb|BT020172.1| Arabidopsis thaliana At3g02160 mRNA, complete cds 40 4.2
11gb|AC158958.4| Mus musculus chromosome 1, clone RP23-31E12, comp... 40 4.2
12gb|BT015767.1| Arabidopsis thaliana At3g02160 mRNA, complete cds 40 4.2
13gb|DQ480415.1| Gorilla gorilla isolate Gorilla2 CMT1A pseudogene... 40 4.2
14gb|DQ480414.1| Gorilla gorilla isolate Gorilla1 CMT1A pseudogene... 40 4.2
15gb|DQ480413.1| Pan troglodytes isolate Chimp_D2 CMT1A pseudogene... 40 4.2
16gb|DQ480412.1| Pan troglodytes isolate Chimp_D1 CMT1A pseudogene... 40 4.2
17gb|DQ480411.1| Pan troglodytes isolate Chimp_P2 CMT1A pseudogene... 40 4.2
18gb|DQ480410.1| Pan troglodytes isolate Chimp_P1 CMT1A pseudogene... 40 4.2
19gb|DQ480389.1| Homo sapiens isolate AUS2_P2 CMT1A pseudogene, co... 40 4.2
20gb|DQ480388.1| Homo sapiens isolate AUS2_P1 CMT1A pseudogene, co... 40 4.2
21gb|DQ480387.1| Homo sapiens isolate ZUL1_P2 CMT1A pseudogene, co... 40 4.2
22gb|DQ480386.1| Homo sapiens isolate ZUL1_P1 CMT1A pseudogene, co... 40 4.2
23gb|DQ480385.1| Homo sapiens isolate AME1_P2 CMT1A pseudogene, co... 40 4.2
24gb|DQ480384.1| Homo sapiens isolate AME1_P1 CMT1A pseudogene, co... 40 4.2
25gb|DQ480383.1| Homo sapiens isolate JAP_P2 CMT1A pseudogene, com... 40 4.2
26gb|DQ480382.1| Homo sapiens isolate JAP_P1 CMT1A pseudogene, com... 40 4.2
27gb|DQ480381.1| Homo sapiens isolate ZUL2_P2 CMT1A pseudogene, co... 40 4.2
28gb|DQ480380.1| Homo sapiens isolate ZUL2_P1 CMT1A pseudogene, co... 40 4.2
29gb|DQ480379.1| Homo sapiens isolate CAU1_P2 CMT1A pseudogene, co... 40 4.2
30gb|DQ480378.1| Homo sapiens isolate CAU1_P1 CMT1A pseudogene, co... 40 4.2
31gb|DQ480377.1| Homo sapiens isolate CAU2_P2 CMT1A pseudogene, co... 40 4.2
32gb|DQ480376.1| Homo sapiens isolate CAU2_P1 CMT1A pseudogene, co... 40 4.2
33gb|DQ480375.1| Homo sapiens isolate AUS1_P2 CMT1A pseudogene, co... 40 4.2
34gb|DQ480374.1| Homo sapiens isolate AUS1_P1 CMT1A pseudogene, co... 40 4.2
35gb|DQ480373.1| Homo sapiens isolate ITA_P2 CMT1A pseudogene, com... 40 4.2
36gb|DQ480372.1| Homo sapiens isolate ITA_P1 CMT1A pseudogene, com... 40 4.2
37gb|DQ480371.1| Homo sapiens isolate AME2_P2 CMT1A pseudogene, co... 40 4.2
38gb|DQ480370.1| Homo sapiens isolate AME2_P1 CMT1A pseudogene, co... 40 4.2
39gb|AC011664.10|ATAC011664 Arabidopsis thaliana chromosome III BA... 40 4.2
40gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome III BAC... 40 4.2
41emb|CR388124.15| Zebrafish DNA sequence from clone CH211-72C8 in... 40 4.2
42gb|AC124413.2| Mus musculus BAC clone RP24-280K5 from chromosome... 40 4.2
43gb|AC108945.4| Mus musculus BAC clone RP23-119J11 from 15, compl... 40 4.2
44gb|AC121586.3| Mus musculus BAC clone RP23-273A13 from 2, comple... 40 4.2
45gb|AC115755.8| Mus musculus chromosome 15, clone RP23-47L17, com... 40 4.2
46emb|AL591506.24| Human DNA sequence from clone RP11-112N13 on ch... 40 4.2
47emb|AL391704.8| Human DNA sequence from clone RP11-94M14 on chro... 40 4.2
48emb|AL121601.13|HSDJ315G1 Human DNA sequence from clone RP1-315G... 40 4.2
49emb|AL645846.12| Mouse DNA sequence from clone RP23-244C22 on ch... 40 4.2
50emb|BX294445.10| Zebrafish DNA sequence from clone DKEY-265K11 i... 40 4.2
51gb|AC183294.3| Pan troglodytes BAC clone CH251-545A24 from chrom... 40 4.2
52gb|AC010051.9| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell ... 40 4.2
53gb|AC018989.15| Homo sapiens chromosome 17, clone RP11-273K13, c... 40 4.2
54gb|AC005838.2| Homo sapiens chromosome 17, clone RP11-385D13, co... 40 4.2
55gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, comple... 40 4.2
56emb|BX248130.8| Zebrafish DNA sequence from clone CH211-236E5 in... 40 4.2
57emb|BX823224.1|CNS0A5B4 Arabidopsis thaliana Full-length cDNA Co... 40 4.2
58gb|AF250324.1|AF250324 Homo sapiens chromosome 4q35 BAC clones R... 40 4.2
59gb|AC159218.3| Pan troglodytes BAC clone CH251-59O2 from chromos... 40 4.2
60emb|BX276109.11| Mouse DNA sequence from clone RP23-209P8 on chr... 40 4.2
61emb|BX294670.6| Zebrafish DNA sequence from clone CH211-154O6 in... 40 4.2
62gb|AC007429.11|AC007429 Homo sapiens, clone hRPK.70_A_1, complet... 40 4.2
63gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74... 40 4.2
64dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clo... 40 4.2
65dbj|AP005791.2| Homo sapiens genomic DNA, chromosome 8q22, clone... 40 4.2
66gb|U71218.1|HSU71218 Human clone c74F4, 24Kb proximal CMT1A-REP ... 40 4.2
67gb|AC140264.2| Mus musculus BAC clone RP23-316F10 from 10, compl... 40 4.2
68gb|AC101951.11| Mus musculus chromosome 1, clone RP24-153P16, co... 40 4.2
69dbj|AB067619.1| Dimidiochromis compressiceps DNA, SINE sequence,... 40 4.2 
>gb|AC151756.2| Ornithorhynchus anatinus chromosome UNK clone OABb-466P24, complete
              sequence
          Length = 156508

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 61     agcaagatgaaccattttcttt 82
              ||||||||||||||||||||||
Sbjct: 113808 agcaagatgaaccattttcttt 113829



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 99     agcaagatgaaccattttctt 119
              |||||||||||||||||||||
Sbjct: 113808 agcaagatgaaccattttctt 113828
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>gb|AC073095.4| Homo sapiens BAC clone RP11-384A20 from 7, complete sequence
          Length = 70276

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 167   taaaaatgagatgcaactaaa 187
             |||||||||||||||||||||
Sbjct: 59083 taaaaatgagatgcaactaaa 59063
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>emb|AL592504.6| Human DNA sequence from clone RP11-320J16 on chromosome X Contains part
              of a novel gene, complete sequence
          Length = 173828

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 157    aaatgtaatgtaaaaatgagatgca 181
              ||||||||| |||||||||||||||
Sbjct: 120769 aaatgtaatttaaaaatgagatgca 120793
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>gb|AC118465.2| Homo sapiens chromosome 5 clone RP11-950K24, complete sequence
          Length = 153176

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 213   aatttaaaaacaaaattagcacatg 237
             |||||||||||||||||| ||||||
Sbjct: 54993 aatttaaaaacaaaattaccacatg 55017
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>gb|AC118554.2| Homo sapiens chromosome 1 clone RP11-61E2, complete sequence
          Length = 34319

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 213  aatttaaaaacaaaattagca 233
            |||||||||||||||||||||
Sbjct: 6589 aatttaaaaacaaaattagca 6569
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>gb|AC007839.4|AC007839 Drosophila melanogaster, chromosome 2R, region 56B1-56C4, BAC clone
             BACR01N09, complete sequence
          Length = 161172

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   tgtgtgcgcccatcaaaagca 256
             |||||||||||||||||||||
Sbjct: 22068 tgtgtgcgcccatcaaaagca 22088
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>gb|AE003797.3| Drosophila melanogaster chromosome 2R, section 53 of 73 of the complete
              sequence
          Length = 306854

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 236    tgtgtgcgcccatcaaaagca 256
              |||||||||||||||||||||
Sbjct: 204904 tgtgtgcgcccatcaaaagca 204924
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>emb|CT476806.2| Pan troglodytes chromosome X BAC RP43-032D14, complete sequence
          Length = 145919

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 157   aaatgtaatgtaaaaatgagatgca 181
             ||||||||| |||||||||||||||
Sbjct: 63008 aaatgtaatttaaaaatgagatgca 62984
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>ref|NM_111083.2| Arabidopsis thaliana unknown protein AT3G02160 mRNA, complete cds
          Length = 1700

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 64   aagatgaaccattttcttta 83
            ||||||||||||||||||||
Sbjct: 1018 aagatgaaccattttcttta 999
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>gb|BT020172.1| Arabidopsis thaliana At3g02160 mRNA, complete cds
          Length = 1194

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 64  aagatgaaccattttcttta 83
           ||||||||||||||||||||
Sbjct: 688 aagatgaaccattttcttta 669
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>gb|AC158958.4| Mus musculus chromosome 1, clone RP23-31E12, complete sequence
          Length = 213244

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   taatcaatttaaaaacaaaa 227
             ||||||||||||||||||||
Sbjct: 31872 taatcaatttaaaaacaaaa 31853
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>gb|BT015767.1| Arabidopsis thaliana At3g02160 mRNA, complete cds
          Length = 1673

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 64   aagatgaaccattttcttta 83
            ||||||||||||||||||||
Sbjct: 1000 aagatgaaccattttcttta 981
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>gb|DQ480415.1| Gorilla gorilla isolate Gorilla2 CMT1A pseudogene, complete sequence
          Length = 23823

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21659 aatttaaaaacaaaattagc 21678
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>gb|DQ480414.1| Gorilla gorilla isolate Gorilla1 CMT1A pseudogene, complete sequence
          Length = 23823

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21659 aatttaaaaacaaaattagc 21678
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>gb|DQ480413.1| Pan troglodytes isolate Chimp_D2 CMT1A pseudogene, complete sequence
          Length = 25916

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 23756 aatttaaaaacaaaattagc 23775
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>gb|DQ480412.1| Pan troglodytes isolate Chimp_D1 CMT1A pseudogene, complete sequence
          Length = 25905

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 23745 aatttaaaaacaaaattagc 23764
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>gb|DQ480411.1| Pan troglodytes isolate Chimp_P2 CMT1A pseudogene, complete sequence
          Length = 23827

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21657 aatttaaaaacaaaattagc 21676
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>gb|DQ480410.1| Pan troglodytes isolate Chimp_P1 CMT1A pseudogene, complete sequence
          Length = 23848

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21676 aatttaaaaacaaaattagc 21695
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>gb|DQ480389.1| Homo sapiens isolate AUS2_P2 CMT1A pseudogene, complete sequence
          Length = 23810

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21649 aatttaaaaacaaaattagc 21668
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>gb|DQ480388.1| Homo sapiens isolate AUS2_P1 CMT1A pseudogene, complete sequence
          Length = 23812

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21651 aatttaaaaacaaaattagc 21670
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>gb|DQ480387.1| Homo sapiens isolate ZUL1_P2 CMT1A pseudogene, complete sequence
          Length = 23808

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21646 aatttaaaaacaaaattagc 21665
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>gb|DQ480386.1| Homo sapiens isolate ZUL1_P1 CMT1A pseudogene, complete sequence
          Length = 23804

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21642 aatttaaaaacaaaattagc 21661
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>gb|DQ480385.1| Homo sapiens isolate AME1_P2 CMT1A pseudogene, complete sequence
          Length = 23810

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21651 aatttaaaaacaaaattagc 21670
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>gb|DQ480384.1| Homo sapiens isolate AME1_P1 CMT1A pseudogene, complete sequence
          Length = 23808

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21649 aatttaaaaacaaaattagc 21668
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>gb|DQ480383.1| Homo sapiens isolate JAP_P2 CMT1A pseudogene, complete sequence
          Length = 23809

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21652 aatttaaaaacaaaattagc 21671
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>gb|DQ480382.1| Homo sapiens isolate JAP_P1 CMT1A pseudogene, complete sequence
          Length = 23810

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21650 aatttaaaaacaaaattagc 21669
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>gb|DQ480381.1| Homo sapiens isolate ZUL2_P2 CMT1A pseudogene, complete sequence
          Length = 23805

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21647 aatttaaaaacaaaattagc 21666
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>gb|DQ480380.1| Homo sapiens isolate ZUL2_P1 CMT1A pseudogene, complete sequence
          Length = 23804

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21648 aatttaaaaacaaaattagc 21667
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>gb|DQ480379.1| Homo sapiens isolate CAU1_P2 CMT1A pseudogene, complete sequence
          Length = 23809

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21645 aatttaaaaacaaaattagc 21664
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>gb|DQ480378.1| Homo sapiens isolate CAU1_P1 CMT1A pseudogene, complete sequence
          Length = 23800

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21641 aatttaaaaacaaaattagc 21660
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>gb|DQ480377.1| Homo sapiens isolate CAU2_P2 CMT1A pseudogene, complete sequence
          Length = 23807

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21647 aatttaaaaacaaaattagc 21666
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>gb|DQ480376.1| Homo sapiens isolate CAU2_P1 CMT1A pseudogene, complete sequence
          Length = 23804

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21644 aatttaaaaacaaaattagc 21663
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>gb|DQ480375.1| Homo sapiens isolate AUS1_P2 CMT1A pseudogene, complete sequence
          Length = 23810

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21649 aatttaaaaacaaaattagc 21668
to top
>gb|DQ480374.1| Homo sapiens isolate AUS1_P1 CMT1A pseudogene, complete sequence
          Length = 23810

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21649 aatttaaaaacaaaattagc 21668
to top
>gb|DQ480373.1| Homo sapiens isolate ITA_P2 CMT1A pseudogene, complete sequence
          Length = 23804

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21644 aatttaaaaacaaaattagc 21663
to top
>gb|DQ480372.1| Homo sapiens isolate ITA_P1 CMT1A pseudogene, complete sequence
          Length = 23810

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21645 aatttaaaaacaaaattagc 21664
to top
>gb|DQ480371.1| Homo sapiens isolate AME2_P2 CMT1A pseudogene, complete sequence
          Length = 23808

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21646 aatttaaaaacaaaattagc 21665
to top
>gb|DQ480370.1| Homo sapiens isolate AME2_P1 CMT1A pseudogene, complete sequence
          Length = 23806

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21644 aatttaaaaacaaaattagc 21663
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>gb|AC011664.10|ATAC011664 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete
             sequence
          Length = 103960

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    aagatgaaccattttcttta 83
             ||||||||||||||||||||
Sbjct: 14035 aagatgaaccattttcttta 14054
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>gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence,
             complete sequence
          Length = 94369

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    aagatgaaccattttcttta 83
             ||||||||||||||||||||
Sbjct: 79579 aagatgaaccattttcttta 79598
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>emb|CR388124.15| Zebrafish DNA sequence from clone CH211-72C8 in linkage group 15,
             complete sequence
          Length = 173535

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 204   aatgtaatcaatttaaaaacaaaa 227
             |||||||||||||||||| |||||
Sbjct: 66850 aatgtaatcaatttaaaagcaaaa 66873
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>gb|AC124413.2| Mus musculus BAC clone RP24-280K5 from chromosome 10, complete sequence
          Length = 178858

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   aatcaatttaaaaacaaaat 228
             ||||||||||||||||||||
Sbjct: 33260 aatcaatttaaaaacaaaat 33279
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>gb|AC108945.4| Mus musculus BAC clone RP23-119J11 from 15, complete sequence
          Length = 200294

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    taatcaatttaaaaacaaaa 227
              ||||||||||||||||||||
Sbjct: 136968 taatcaatttaaaaacaaaa 136949
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>gb|AC121586.3| Mus musculus BAC clone RP23-273A13 from 2, complete sequence
          Length = 154614

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   ctactaaatgtaatgtaaaa 171
             ||||||||||||||||||||
Sbjct: 67203 ctactaaatgtaatgtaaaa 67222
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>gb|AC115755.8| Mus musculus chromosome 15, clone RP23-47L17, complete sequence
          Length = 123355

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   atgtaatcaatttaaaaaca 224
             ||||||||||||||||||||
Sbjct: 85220 atgtaatcaatttaaaaaca 85239
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>emb|AL591506.24| Human DNA sequence from clone RP11-112N13 on chromosome 9 Contains a
              pseudogene similar to reverse transcriptase proteins,
              complete sequence
          Length = 175831

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    aatttaaaaacaaaattagc 232
              ||||||||||||||||||||
Sbjct: 149556 aatttaaaaacaaaattagc 149537
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>emb|AL391704.8| Human DNA sequence from clone RP11-94M14 on chromosome 10 Contains the 5'
              end of a novel gene and two novel genes, complete sequence
          Length = 180552

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    aatcaatttaaaaacaaaat 228
              ||||||||||||||||||||
Sbjct: 156744 aatcaatttaaaaacaaaat 156725
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>emb|AL121601.13|HSDJ315G1 Human DNA sequence from clone RP1-315G1 on chromosome Xq24-25 Contains
             the 3' end of the BIRC4 gene for baculoviral IAP
             repeat-containing 4, two novel genes, a par-6 partitioning
             defective 6 homolog beta (C. elegans) (PARD6B) pseudogene,
              the 5' end of the STAG2 gene for stromal antigen 2 and a
             CpG island, complete sequence
          Length = 133391

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 78278 aatttaaaaacaaaattagc 78297
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>emb|AL645846.12| Mouse DNA sequence from clone RP23-244C22 on chromosome 11 Contains a
              novel gene, the Tob1 gene for transducer of ErbB-2.1, the
              gene for a novel protein (AY100450) (WFIKKN-like growth and
              differentiation factor-associated serum protein 1) (Gasp1),
              a novel gene, the gene for a novel protein (3300001P08Rik)
              (Luc7a) and one CpG island, complete sequence
          Length = 188962

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 204    aatgtaatcaatttaaaaacaaaa 227
              ||||||| ||||||||||||||||
Sbjct: 135195 aatgtaaacaatttaaaaacaaaa 135172
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>emb|BX294445.10| Zebrafish DNA sequence from clone DKEY-265K11 in linkage group 1,
              complete sequence
          Length = 159780

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    tcaatttaaaaacaaaatta 230
              ||||||||||||||||||||
Sbjct: 132343 tcaatttaaaaacaaaatta 132324
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>gb|AC183294.3| Pan troglodytes BAC clone CH251-545A24 from chromosome 17, complete
              sequence
          Length = 173991

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    aatttaaaaacaaaattagc 232
              ||||||||||||||||||||
Sbjct: 135421 aatttaaaaacaaaattagc 135440
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>gb|AC010051.9| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 184424

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   ctaaatgtaatgtaaaaatg 174
             ||||||||||||||||||||
Sbjct: 63994 ctaaatgtaatgtaaaaatg 63975
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>gb|AC018989.15| Homo sapiens chromosome 17, clone RP11-273K13, complete sequence
          Length = 162066

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 15536 aatttaaaaacaaaattagc 15517
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>gb|AC005838.2| Homo sapiens chromosome 17, clone RP11-385D13, complete sequence
          Length = 67791

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 21741 aatttaaaaacaaaattagc 21760
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>gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, complete sequence
          Length = 171301

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   atcaatttaaaaacaaaatt 229
             ||||||||||||||||||||
Sbjct: 57033 atcaatttaaaaacaaaatt 57052
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>emb|BX248130.8| Zebrafish DNA sequence from clone CH211-236E5 in linkage group 1,
              complete sequence
          Length = 183058

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    tcaatttaaaaacaaaatta 230
              ||||||||||||||||||||
Sbjct: 178092 tcaatttaaaaacaaaatta 178073
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>emb|BX823224.1|CNS0A5B4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS12ZG05 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1702

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 64   aagatgaaccattttcttta 83
            ||||||||||||||||||||
Sbjct: 1018 aagatgaaccattttcttta 999
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>gb|AF250324.1|AF250324 Homo sapiens chromosome 4q35 BAC clones RPCI-11-463J17 and
              RPCI-6-92G13RCB2, complete sequence
          Length = 245708

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    atcaatttaaaaacaaaatt 229
              ||||||||||||||||||||
Sbjct: 195021 atcaatttaaaaacaaaatt 195040
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>gb|AC159218.3| Pan troglodytes BAC clone CH251-59O2 from chromosome unknown, complete
             sequence
          Length = 178970

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 83980 aatttaaaaacaaaattagc 83999
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>emb|BX276109.11| Mouse DNA sequence from clone RP23-209P8 on chromosome 2, complete
             sequence
          Length = 69864

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   ctactaaatgtaatgtaaaa 171
             ||||||||||||||||||||
Sbjct: 29532 ctactaaatgtaatgtaaaa 29513
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>emb|BX294670.6| Zebrafish DNA sequence from clone CH211-154O6 in linkage group 16,
             complete sequence
          Length = 199070

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   taaatgtaatgtaaaaatga 175
             ||||||||||||||||||||
Sbjct: 51802 taaatgtaatgtaaaaatga 51783
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>gb|AC007429.11|AC007429 Homo sapiens, clone hRPK.70_A_1, complete sequence
          Length = 160025

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 208    taatcaatttaaaaacaaaattag 231
              ||||||| ||||||||||||||||
Sbjct: 144748 taatcaagttaaaaacaaaattag 144725
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>gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74 of 83 of the complete
             sequence
          Length = 313157

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   ctaaatgtaatgtaaaaatg 174
             ||||||||||||||||||||
Sbjct: 84687 ctaaatgtaatgtaaaaatg 84706
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>dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clone: KB1573B4, complete
             sequence
          Length = 157927

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   atcaatttaaaaacaaaatt 229
             ||||||||||||||||||||
Sbjct: 13362 atcaatttaaaaacaaaatt 13381
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>dbj|AP005791.2| Homo sapiens genomic DNA, chromosome 8q22, clone: KB1357H4, complete
              sequence
          Length = 160208

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    atcaatttaaaaacaaaatt 229
              ||||||||||||||||||||
Sbjct: 156797 atcaatttaaaaacaaaatt 156816
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>gb|U71218.1|HSU71218 Human clone c74F4, 24Kb proximal CMT1A-REP sequence
          Length = 34240

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aatttaaaaacaaaattagc 232
             ||||||||||||||||||||
Sbjct: 30249 aatttaaaaacaaaattagc 30268
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>gb|AC140264.2| Mus musculus BAC clone RP23-316F10 from 10, complete sequence
          Length = 176292

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   aatcaatttaaaaacaaaat 228
             ||||||||||||||||||||
Sbjct: 35916 aatcaatttaaaaacaaaat 35897
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>gb|AC101951.11| Mus musculus chromosome 1, clone RP24-153P16, complete sequence
          Length = 174693

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    taatcaatttaaaaacaaaa 227
              ||||||||||||||||||||
Sbjct: 153762 taatcaatttaaaaacaaaa 153743
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>dbj|AB067619.1| Dimidiochromis compressiceps DNA, SINE sequence, locus:1269
          Length = 624

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 209 aatcaatttaaaaacaaaat 228
           ||||||||||||||||||||
Sbjct: 526 aatcaatttaaaaacaaaat 545


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,675,425
Number of Sequences: 3902068
Number of extensions: 4675425
Number of successful extensions: 120904
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120782
Number of HSP's gapped (non-prelim): 122
length of query: 316
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 294
effective length of database: 17,147,199,772
effective search space: 5041276732968
effective search space used: 5041276732968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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