ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2g21 |
|---|---|
| Clone Library Name | barley_pub |
>CY561_MOUSE (Q60720) Cytochrome b561 (Cytochrome b-561)| Length = 250 Score = 73.6 bits (179), Expect = 4e-13 Identities = 36/88 (40%), Positives = 49/88 (55%) Frame = -3 Query: 588 ANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALPWHVLLGIFVYILALAT 409 A+LYSLHSW GI LY +QW+ GF F FP A+ ++R P H+ G +++ ++ T Sbjct: 114 ADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLFSVGT 173 Query: 408 AELGFLEKLTFLQSSGIDKYGPESFLVN 325 A LG E L F S + PE L N Sbjct: 174 ALLGLKEALLFKLGSKYSTFEPEGVLAN 201
>CY561_SHEEP (Q95204) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 73.6 bits (179), Expect = 4e-13 Identities = 37/88 (42%), Positives = 51/88 (57%) Frame = -3 Query: 588 ANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALPWHVLLGIFVYILALAT 409 A+LYSLHSW GI +L+ QW+ GF F FP A+ ++R P HV G +++L++AT Sbjct: 116 ADLYSLHSWCGILVFALFFAQWLVGFSFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVAT 175 Query: 408 AELGFLEKLTFLQSSGIDKYGPESFLVN 325 A LG E L F + + PE L N Sbjct: 176 ALLGLKEALLFELGTKYSTFEPEGVLAN 203
>CY561_BOVIN (P10897) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 73.6 bits (179), Expect = 4e-13 Identities = 37/88 (42%), Positives = 51/88 (57%) Frame = -3 Query: 588 ANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALPWHVLLGIFVYILALAT 409 A+LYSLHSW GI +L+ QW+ GF F FP A+ ++R P HV G +++L++AT Sbjct: 116 ADLYSLHSWCGILVFALFFAQWLVGFSFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVAT 175 Query: 408 AELGFLEKLTFLQSSGIDKYGPESFLVN 325 A LG E L F + + PE L N Sbjct: 176 ALLGLKEALLFELGTKYSMFEPEGVLAN 203
>CY561_PONPY (Q5RCZ2) Cytochrome b561 (Cytochrome b-561)| Length = 251 Score = 73.2 bits (178), Expect = 6e-13 Identities = 36/88 (40%), Positives = 49/88 (55%) Frame = -3 Query: 588 ANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALPWHVLLGIFVYILALAT 409 A+LYSLHSW GI LY +QW+ GF F FP A+ ++R P H+ G +++L++ T Sbjct: 115 ADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGT 174 Query: 408 AELGFLEKLTFLQSSGIDKYGPESFLVN 325 A LG E L F + PE L N Sbjct: 175 ALLGLKEALLFKLRDKYSAFEPEGVLAN 202
>CY561_HUMAN (P49447) Cytochrome b561 (Cytochrome b-561)| Length = 251 Score = 73.2 bits (178), Expect = 6e-13 Identities = 36/88 (40%), Positives = 49/88 (55%) Frame = -3 Query: 588 ANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALPWHVLLGIFVYILALAT 409 A+LYSLHSW GI LY +QW+ GF F FP A+ ++R P H+ G +++L++ T Sbjct: 115 ADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGT 174 Query: 408 AELGFLEKLTFLQSSGIDKYGPESFLVN 325 A LG E L F + PE L N Sbjct: 175 ALLGLKEALLFNLGGKYSAFEPEGVLAN 202
>CY561_PIG (Q95245) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 66.6 bits (161), Expect = 5e-11 Identities = 36/92 (39%), Positives = 49/92 (53%) Frame = -3 Query: 600 KLEIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALPWHVLLGIFVYIL 421 K IA+LYSLHSW GI L+ QW+ G F FP A+ ++R P HV G +++L Sbjct: 112 KKGIADLYSLHSWCGILVFVLFLAQWLVGLGFFLFPGASFSLRSRYRPQHVFFGAAIFLL 171 Query: 420 ALATAELGFLEKLTFLQSSGIDKYGPESFLVN 325 ++ TA LG E L F + + E L N Sbjct: 172 SVGTALLGLKEALLFQLGTKYSAFESEGVLAN 203
>CY561_CAEEL (P34465) Putative cytochrome b561 (Cytochrome b-561)| Length = 266 Score = 66.2 bits (160), Expect = 7e-11 Identities = 27/69 (39%), Positives = 43/69 (62%) Frame = -3 Query: 591 IANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALPWHVLLGIFVYILALA 412 I NL SLHSW+G+ + LY Q+I GF+T+FFP +R+ +P+H + G+ ++I Sbjct: 132 IVNLVSLHSWIGLSVVILYFAQYIVGFITYFFPGMPIPIRQLVMPFHQMFGVLIFIFVSI 191 Query: 411 TAELGFLEK 385 T +G E+ Sbjct: 192 TVAMGISER 200
>CY561_XENLA (Q91577) Cytochrome b561 (Cytochrome b-561)| Length = 247 Score = 64.7 bits (156), Expect = 2e-10 Identities = 36/87 (41%), Positives = 48/87 (55%) Frame = -3 Query: 585 NLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALPWHVLLGIFVYILALATA 406 ++YSLHSW GI T +LY +QWI GF FF P A R P H G +++ ++AT+ Sbjct: 116 DMYSLHSWCGIVTFTLYILQWIIGFSLFFIPGVAFTYRSQFKPLHEFFGRALFLSSIATS 175 Query: 405 ELGFLEKLTFLQSSGIDKYGPESFLVN 325 LG EK+ SS + E LVN Sbjct: 176 LLGLTEKMFSEYSS----HPAEGILVN 198
>CP4CU_BLAGE (Q964T1) Cytochrome P450 4c21 (EC 1.14.14.1) (CYPIVC21)| Length = 501 Score = 32.0 bits (71), Expect = 1.5 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 16/64 (25%) Frame = -3 Query: 612 RITMKLEIANLYSL-HSWLGIGTISLYGIQW---------------IFGFLTFFFPKAAP 481 R T ++ A LY L HSWLG G ++ G +W + GF+T F K+ Sbjct: 95 RNTQLIDKAFLYDLFHSWLGTGLLTSSGAKWHQHRKIITPTFHFSILEGFITIFAEKSEI 154 Query: 480 NVRK 469 VRK Sbjct: 155 LVRK 158
>EX7L_ZYMMO (Q9FDL4) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 544 Score = 30.8 bits (68), Expect = 3.3 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 6/81 (7%) Frame = -2 Query: 586 ELVQSAFLAWNRNNFSIWYSVDIWILDLLLPQGCAKCEEGCSSL------ARTSWNLRLH 425 ELV + W +N +W + D +L +G A+ E+ S + A+T L L Sbjct: 453 ELVTARLNIWQKNIDQLWRVAEQAHPDKILAKGYARVEDSHSHVVSNAHDAKTHKRLNLI 512 Query: 424 FSPGNGRTWVSGEAHLPPKLR 362 F +G WV+ E PPK R Sbjct: 513 FH--DGSVWVAPET--PPKSR 529
>MATK_LATCL (Q9TIR8) Maturase K (Intron maturase)| Length = 511 Score = 30.0 bits (66), Expect = 5.7 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%) Frame = +1 Query: 187 FLFMQ-YTSHILVFWDWSVTLWFF 255 FLF++ + ++++FW W +LWF+ Sbjct: 294 FLFVKKWKCYLIIFWQWHFSLWFY 317
>ASPM_BOVIN (P62285) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3371 Score = 29.6 bits (65), Expect = 7.4 Identities = 17/71 (23%), Positives = 33/71 (46%) Frame = +3 Query: 351 ICRCLSFGGR*ASPETQVLPLPGLKCKRRFQEVRAKEEHPSSHLAQPWGRRRSRIQISTE 530 IC +F G A + + +RRF+ + + S W +R+ R ++ T Sbjct: 2160 ICIQAAFRGMRARRRLKAMHSAAAVIQRRFRTLGMRRRFLSLRKTAVWVQRKYRAKVCTR 2219 Query: 531 YHIEKLFLFQA 563 +H+++L L +A Sbjct: 2220 HHVQQLRLQKA 2230
>MATK_EPIVI (P30071) Maturase K (Intron maturase)| Length = 439 Score = 29.3 bits (64), Expect = 9.7 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = +1 Query: 199 QYTSHILVFWDWSVTLWFFKAS 264 ++ +++ FW W +LWFF S Sbjct: 232 KWKCYVITFWQWYFSLWFFSRS 253
>TLR5_HUMAN (O60602) Toll-like receptor 5 precursor (Toll/interleukin-1| receptor-like protein 3) Length = 858 Score = 29.3 bits (64), Expect = 9.7 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +2 Query: 32 CLIIHDTSKNNMCLYVFTYTQGRCMT 109 CL+ ++ CL F+Y QGRC++ Sbjct: 756 CLVSRHFLRDGWCLEAFSYAQGRCLS 781
>SFT2_YEAST (P38166) Protein SFT2| Length = 215 Score = 29.3 bits (64), Expect = 9.7 Identities = 18/54 (33%), Positives = 23/54 (42%) Frame = -3 Query: 540 LYGIQWIFGFLTFFFPKAAPNVRKGALPWHVLLGIFVYILALATAELGFLEKLT 379 L G F TF FP A RK L W + +FV + L +L+ LT Sbjct: 88 LLGATACFTLCTFLFPVLAAKPRKFGLLWTMGSLLFVLAFGVLMGPLAYLKHLT 141 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,732,137 Number of Sequences: 219361 Number of extensions: 1852158 Number of successful extensions: 4869 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4699 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4868 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
