Clone Name | rbasd2g21 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_466997.1| Oryza sativa (japonica cultivar-group), mRNA Length = 750 Score = 276 bits (139), Expect = 8e-71 Identities = 326/387 (84%), Gaps = 1/387 (0%) Strand = Plus / Minus Query: 222 tttctgggattggagcgtaaccctgtggttcttcaaggcgagctggggcaacagcagcta 281 |||| ||||||||||| || | || |||||||||| |||||| || | ||||||||| | Sbjct: 745 tttcagggattggagcatactcatgcggttcttcaacgcgagcaggagaaacagcagcaa 686 Query: 282 caacaactgaggcaccaaatagcacaacaaccaacgccgtgaagttcaccagaaatgact 341 | || || || ||||| ||||||||||||| ||| |||||||||||||||| ||||| || Sbjct: 685 ccacgacggaagcaccgaatagcacaacaatcaaagccgtgaagttcaccaaaaatgcct 626 Query: 342 ctggcccatatttgtcgatgcctgagctttggaggaaggtgagcttctccagaaacccaa 401 ||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||| || | Sbjct: 625 ctgcgccatatttgtcgagccctgagctttggaggaaagtgagcttctcaagaaatccga 566 Query: 402 gttctgccgttgccagggctaaaatgtaaacgaagattccaagaagtacgtgccaaggaa 461 ||||||| || ||||||||||||||||| ||||||| |||| |||| |||||||||| Sbjct: 565 gttctgcggtggccagggctaaaatgtagacgaagagcccaaacagtatatgccaaggaa 506 Query: 462 gagcacccttcctcacatttggcgcagccttggggaagaagaaggtcaagaatccaaata 521 || ||||||||||||| |||||| ||| |||||||||||| | | || || |||| Sbjct: 505 gaacacccttcctcacgcttggcgaagcacgggggaagaagaaagcaacaaacccgaata 446 Query: 522 tccactgaataccatatagagaaattgttcctattccaagccaagaatgcagactgtaca 581 |||||||||||||||| | | |||||||||| || ||||||||||||||||||||||| | Sbjct: 445 tccactgaataccatacaaacaaattgttccaatcccaagccaagaatgcagactgtaga 386 Query: 582 agttcgcaatttccagtttcattgtga 608 ||| |||| ||||| ||||||||||| Sbjct: 385 ggttggcaa-ttccactttcattgtga 360
>dbj|AB182641.1| Zea mays zcyb mRNA for cytochrome b561, complete cds Length = 958 Score = 270 bits (136), Expect = 5e-69 Identities = 307/364 (84%) Strand = Plus / Minus Query: 216 actagttttctgggattggagcgtaaccctgtggttcttcaaggcgagctggggcaacag 275 ||||||||||||| |||||| | |||||||||||||||||||||||| |||| || | || Sbjct: 751 actagttttctggaattggatcataaccctgtggttcttcaaggcgaactggagctatag 692 Query: 276 cagctacaacaactgaggcaccaaatagcacaacaaccaacgccgtgaagttcaccagaa 335 |||| || ||||| ||||||||||||| ||| |||||||| || ||||||||||| | | Sbjct: 691 cagccaccacaacagaggcaccaaataacacgacaaccaatgctgtgaagttcactaaga 632 Query: 336 atgactctggcccatatttgtcgatgcctgagctttggaggaaggtgagcttctccagaa 395 ||| ||||| ||||||||||||| |||||||| | |||||| ||||||||||| |||| Sbjct: 631 atgcctctgtgccatatttgtcgagacctgagctctcgaggaaagtgagcttctcaagaa 572 Query: 396 acccaagttctgccgttgccagggctaaaatgtaaacgaagattccaagaagtacgtgcc 455 | || |||||||| | ||||| ||||| ||||| || |||| |||| |||||||||| Sbjct: 571 agccgagttctgcattagccagtgctaagatgtagacaaagagcccaaagagtacgtgcc 512 Query: 456 aaggaagagcacccttcctcacatttggcgcagccttggggaagaagaaggtcaagaatc 515 |||||||| |||||||| |||| ||||||||||| ||||||||||| || | ||||| Sbjct: 511 aaggaagaacacccttcttcacgtttggcgcagcaccagggaagaagaacgtgacgaatc 452 Query: 516 caaatatccactgaataccatatagagaaattgttcctattccaagccaagaatgcagac 575 ||| |||||||||||||||||| | || |||||||||||| |||| |||||| ||||| | Sbjct: 451 caattatccactgaataccatacaaagtaattgttcctatcccaatccaagagtgcaggc 392 Query: 576 tgta 579 |||| Sbjct: 391 tgta 388
>gb|AY104321.1| Zea mays PCO083972 mRNA sequence Length = 1138 Score = 268 bits (135), Expect = 2e-68 Identities = 306/363 (84%) Strand = Plus / Minus Query: 217 ctagttttctgggattggagcgtaaccctgtggttcttcaaggcgagctggggcaacagc 276 |||||||||||| |||||| | |||||||||||||||||||||||| |||| || | ||| Sbjct: 926 ctagttttctggaattggatcataaccctgtggttcttcaaggcgaactggagctatagc 867 Query: 277 agctacaacaactgaggcaccaaatagcacaacaaccaacgccgtgaagttcaccagaaa 336 ||| || ||||| ||||||||||||| ||| |||||||| || ||||||||||| | || Sbjct: 866 agccaccacaacagaggcaccaaataacacgacaaccaatgctgtgaagttcactaagaa 807 Query: 337 tgactctggcccatatttgtcgatgcctgagctttggaggaaggtgagcttctccagaaa 396 || ||||| ||||||||||||| |||||||| | |||||| ||||||||||| ||||| Sbjct: 806 tgcctctgtgccatatttgtcgagacctgagctctcgaggaaagtgagcttctcaagaaa 747 Query: 397 cccaagttctgccgttgccagggctaaaatgtaaacgaagattccaagaagtacgtgcca 456 || |||||||| | ||||| ||||| ||||| || |||| |||| ||||||||||| Sbjct: 746 gccgagttctgcattagccagtgctaagatgtagacaaagagcccaaagagtacgtgcca 687 Query: 457 aggaagagcacccttcctcacatttggcgcagccttggggaagaagaaggtcaagaatcc 516 ||||||| |||||||| |||| ||||||||||| ||||||||||| || | |||||| Sbjct: 686 aggaagaacacccttcttcacgtttggcgcagcaccagggaagaagaacgtgacgaatcc 627 Query: 517 aaatatccactgaataccatatagagaaattgttcctattccaagccaagaatgcagact 576 || |||||||||||||||||| | || |||||||||||| |||| |||||| ||||| || Sbjct: 626 aattatccactgaataccatacaaagtaattgttcctatcccaatccaagagtgcaggct 567 Query: 577 gta 579 ||| Sbjct: 566 gta 564
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 212 bits (107), Expect = 1e-51 Identities = 239/283 (84%) Strand = Plus / Plus Query: 222 tttctgggattggagcgtaaccctgtggttcttcaaggcgagctggggcaacagcagcta 281 |||| ||||||||||| || | || |||||||||| |||||| || | ||||||||| | Sbjct: 25816034 tttcagggattggagcatactcatgcggttcttcaacgcgagcaggagaaacagcagcaa 25816093 Query: 282 caacaactgaggcaccaaatagcacaacaaccaacgccgtgaagttcaccagaaatgact 341 | || || || ||||| ||||||||||||| ||| |||||||||||||||| ||||| || Sbjct: 25816094 ccacgacggaagcaccgaatagcacaacaatcaaagccgtgaagttcaccaaaaatgcct 25816153 Query: 342 ctggcccatatttgtcgatgcctgagctttggaggaaggtgagcttctccagaaacccaa 401 ||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||| || | Sbjct: 25816154 ctgcgccatatttgtcgagccctgagctttggaggaaagtgagcttctcaagaaatccga 25816213 Query: 402 gttctgccgttgccagggctaaaatgtaaacgaagattccaagaagtacgtgccaaggaa 461 ||||||| || ||||||||||||||||| ||||||| |||| |||| |||||||||| Sbjct: 25816214 gttctgcggtggccagggctaaaatgtagacgaagagcccaaacagtatatgccaaggaa 25816273 Query: 462 gagcacccttcctcacatttggcgcagccttggggaagaagaa 504 || ||||||||||||| |||||| ||| |||||||||||| Sbjct: 25816274 gaacacccttcctcacgcttggcgaagcacgggggaagaagaa 25816316 Score = 77.8 bits (39), Expect = 4e-11 Identities = 73/83 (87%), Gaps = 1/83 (1%) Strand = Plus / Plus Query: 526 ctgaataccatatagagaaattgttcctattccaagccaagaatgcagactgtacaagtt 585 |||||||||||| | | |||||||||| || ||||||||||||||||||||||| | ||| Sbjct: 25816825 ctgaataccatacaaacaaattgttccaatcccaagccaagaatgcagactgtagaggtt 25816884 Query: 586 cgcaatttccagtttcattgtga 608 |||| ||||| ||||||||||| Sbjct: 25816885 ggcaa-ttccactttcattgtga 25816906
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G03 Length = 106401 Score = 212 bits (107), Expect = 1e-51 Identities = 239/283 (84%) Strand = Plus / Plus Query: 222 tttctgggattggagcgtaaccctgtggttcttcaaggcgagctggggcaacagcagcta 281 |||| ||||||||||| || | || |||||||||| |||||| || | ||||||||| | Sbjct: 62640 tttcagggattggagcatactcatgcggttcttcaacgcgagcaggagaaacagcagcaa 62699 Query: 282 caacaactgaggcaccaaatagcacaacaaccaacgccgtgaagttcaccagaaatgact 341 | || || || ||||| ||||||||||||| ||| |||||||||||||||| ||||| || Sbjct: 62700 ccacgacggaagcaccgaatagcacaacaatcaaagccgtgaagttcaccaaaaatgcct 62759 Query: 342 ctggcccatatttgtcgatgcctgagctttggaggaaggtgagcttctccagaaacccaa 401 ||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||| || | Sbjct: 62760 ctgcgccatatttgtcgagccctgagctttggaggaaagtgagcttctcaagaaatccga 62819 Query: 402 gttctgccgttgccagggctaaaatgtaaacgaagattccaagaagtacgtgccaaggaa 461 ||||||| || ||||||||||||||||| ||||||| |||| |||| |||||||||| Sbjct: 62820 gttctgcggtggccagggctaaaatgtagacgaagagcccaaacagtatatgccaaggaa 62879 Query: 462 gagcacccttcctcacatttggcgcagccttggggaagaagaa 504 || ||||||||||||| |||||| ||| |||||||||||| Sbjct: 62880 gaacacccttcctcacgcttggcgaagcacgggggaagaagaa 62922 Score = 77.8 bits (39), Expect = 4e-11 Identities = 73/83 (87%), Gaps = 1/83 (1%) Strand = Plus / Plus Query: 526 ctgaataccatatagagaaattgttcctattccaagccaagaatgcagactgtacaagtt 585 |||||||||||| | | |||||||||| || ||||||||||||||||||||||| | ||| Sbjct: 63431 ctgaataccatacaaacaaattgttccaatcccaagccaagaatgcagactgtagaggtt 63490 Query: 586 cgcaatttccagtttcattgtga 608 |||| ||||| ||||||||||| Sbjct: 63491 ggcaa-ttccactttcattgtga 63512
>dbj|AK062638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D05, full insert sequence Length = 553 Score = 212 bits (107), Expect = 1e-51 Identities = 239/283 (84%) Strand = Plus / Minus Query: 222 tttctgggattggagcgtaaccctgtggttcttcaaggcgagctggggcaacagcagcta 281 |||| ||||||||||| || | || |||||||||| |||||| || | ||||||||| | Sbjct: 309 tttcagggattggagcatactcatgcggttcttcaacgcgagcaggagaaacagcagcaa 250 Query: 282 caacaactgaggcaccaaatagcacaacaaccaacgccgtgaagttcaccagaaatgact 341 | || || || ||||| ||||||||||||| ||| |||||||||||||||| ||||| || Sbjct: 249 ccacgacggaagcaccgaatagcacaacaatcaaagccgtgaagttcaccaaaaatgcct 190 Query: 342 ctggcccatatttgtcgatgcctgagctttggaggaaggtgagcttctccagaaacccaa 401 ||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||| || | Sbjct: 189 ctgcgccatatttgtcgagccctgagctttggaggaaagtgagcttctcaagaaatccga 130 Query: 402 gttctgccgttgccagggctaaaatgtaaacgaagattccaagaagtacgtgccaaggaa 461 ||||||| || ||||||||||||||||| ||||||| |||| |||| |||||||||| Sbjct: 129 gttctgcggtggccagggctaaaatgtagacgaagagcccaaacagtatatgccaaggaa 70 Query: 462 gagcacccttcctcacatttggcgcagccttggggaagaagaa 504 || ||||||||||||| |||||| ||| |||||||||||| Sbjct: 69 gaacacccttcctcacgcttggcgaagcacgggggaagaagaa 27
>gb|AY108215.1| Zea mays PCO083971 mRNA sequence Length = 706 Score = 91.7 bits (46), Expect = 3e-15 Identities = 106/126 (84%) Strand = Plus / Minus Query: 454 ccaaggaagagcacccttcctcacatttggcgcagccttggggaagaagaaggtcaagaa 513 |||||||||| |||||||| |||| ||||||||||| ||||||||||| || | ||| Sbjct: 674 ccaaggaagaacacccttcttcacgtttggcgcagcaccagggaagaagaatgtaacgaa 615 Query: 514 tccaaatatccactgaataccatatagagaaattgttcctattccaagccaagaatgcag 573 ||||| |||||||||||||||||| | || ||| || ||||| |||| |||||| |||| Sbjct: 614 tccaactatccactgaataccatacaaagtaatcgtccctatcccaatccaagagtgcaa 555 Query: 574 actgta 579 |||||| Sbjct: 554 actgta 549
>ref|NM_197235.1| Oryza sativa (japonica cultivar-group) putative cytochrome b-561 (OSJNBb0073N24.15), mRNA Length = 693 Score = 63.9 bits (32), Expect = 6e-07 Identities = 96/116 (82%), Gaps = 1/116 (0%) Strand = Plus / Minus Query: 493 ggggaagaagaaggtcaagaatccaaatatccactgaataccatatagagaaattgttcc 552 ||||||||||||||| | ||| |||||||||||||| | |||||||| | | || ||||| Sbjct: 417 ggggaagaagaaggtgacgaagccaaatatccactgtacaccatataaacagatagttcc 358 Query: 553 tattccaagccaagaatgcagactgtacaagttcgcaatttccagtttcattgtga 608 | ||||| ||| || ||||| ||||| | ||| |||| ||||| ||||||||||| Sbjct: 357 aagtccaacccaggagtgcaggctgtagaggttagcaa-ttccactttcattgtga 303 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 374 aggaaggtgagcttctccagaaaccc 399 |||||||||||||||||||| ||||| Sbjct: 536 aggaaggtgagcttctccaggaaccc 511
>ref|XM_473298.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 711 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 493 ggggaagaagaaggtcaagaatccaaatatccactgaataccatatagagaaattgttcc 552 |||| ||||||| | || ||||||||||||||||||||| || || || || |||||||| Sbjct: 435 ggggtagaagaacgccacgaatccaaatatccactgaatgccgtacagcgagattgttcc 376 Query: 553 tattccaagccaagaatgcagactgta 579 || || ||||| |||||||| ||||| Sbjct: 375 gatgccgagccaggaatgcaggctgta 349 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 318 ccgtgaagttcaccagaaatgactctggcccatatttgtcgatgcctgagctttggagga 377 |||||||||||||||| || | ||| | || || ||||||| ||| ||||| ||||||| Sbjct: 610 ccgtgaagttcaccaggaacgcctccgcgccgtacttgtcgaggccggagctctggagga 551 Query: 378 aggtgagcttctccag 393 |||| ||||||||||| Sbjct: 550 aggtcagcttctccag 535
>dbj|AK069219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012J01, full insert sequence Length = 1046 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 493 ggggaagaagaaggtcaagaatccaaatatccactgaataccatatagagaaattgttcc 552 |||| ||||||| | || ||||||||||||||||||||| || || || || |||||||| Sbjct: 618 ggggtagaagaacgccacgaatccaaatatccactgaatgccgtacagcgagattgttcc 559 Query: 553 tattccaagccaagaatgcagactgta 579 || || ||||| |||||||| ||||| Sbjct: 558 gatgccgagccaggaatgcaggctgta 532 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 318 ccgtgaagttcaccagaaatgactctggcccatatttgtcgatgcctgagctttggagga 377 |||||||||||||||| || | ||| | || || ||||||| ||| ||||| ||||||| Sbjct: 793 ccgtgaagttcaccaggaacgcctccgcgccgtacttgtcgaggccggagctctggagga 734 Query: 378 aggtgagcttctccag 393 |||| ||||||||||| Sbjct: 733 aggtcagcttctccag 718
>dbj|AK061426.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G12, full insert sequence Length = 1078 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 493 ggggaagaagaaggtcaagaatccaaatatccactgaataccatatagagaaattgttcc 552 |||| ||||||| | || ||||||||||||||||||||| || || || || |||||||| Sbjct: 616 ggggtagaagaacgccacgaatccaaatatccactgaatgccgtacagcgagattgttcc 557 Query: 553 tattccaagccaagaatgcagactgta 579 || || ||||| |||||||| ||||| Sbjct: 556 gatgccgagccaggaatgcaggctgta 530 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 318 ccgtgaagttcaccagaaatgactctggcccatatttgtcgatgcctgagctttggagga 377 |||||||||||||||| || | ||| | || || ||||||| ||| ||||| ||||||| Sbjct: 791 ccgtgaagttcaccaggaacgcctccgcgccgtacttgtcgaggccggagctctggagga 732 Query: 378 aggtgagcttctccag 393 |||| ||||||||||| Sbjct: 731 aggtcagcttctccag 716
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24, complete sequence Length = 121056 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 318 ccgtgaagttcaccagaaatgactctggcccatatttgtcgatgcctgagctttggagga 377 |||||||||||||||| || | ||| | || || ||||||| ||| ||||| ||||||| Sbjct: 87625 ccgtgaagttcaccaggaacgcctccgcgccgtacttgtcgaggccggagctctggagga 87684 Query: 378 aggtgagcttctccag 393 |||| ||||||||||| Sbjct: 87685 aggtcagcttctccag 87700 Score = 40.1 bits (20), Expect = 8.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 493 ggggaagaagaaggtcaagaatccaaatatccactg 528 |||| ||||||| | || |||||||||||||||||| Sbjct: 87800 ggggtagaagaacgccacgaatccaaatatccactg 87835
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 318 ccgtgaagttcaccagaaatgactctggcccatatttgtcgatgcctgagctttggagga 377 |||||||||||||||| || | ||| | || || ||||||| ||| ||||| ||||||| Sbjct: 26648067 ccgtgaagttcaccaggaacgcctccgcgccgtacttgtcgaggccggagctctggagga 26648126 Query: 378 aggtgagcttctccag 393 |||| ||||||||||| Sbjct: 26648127 aggtcagcttctccag 26648142 Score = 40.1 bits (20), Expect = 8.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 493 ggggaagaagaaggtcaagaatccaaatatccactg 528 |||| ||||||| | || |||||||||||||||||| Sbjct: 26648242 ggggtagaagaacgccacgaatccaaatatccactg 26648277
>dbj|AK111107.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A03, full insert sequence Length = 946 Score = 56.0 bits (28), Expect = 1e-04 Identities = 95/116 (81%), Gaps = 1/116 (0%) Strand = Plus / Minus Query: 493 ggggaagaagaaggtcaagaatccaaatatccactgaataccatatagagaaattgttcc 552 ||||||||||||||| | ||| |||||||| ||||| | |||||||| | | || ||||| Sbjct: 496 ggggaagaagaaggtgacgaagccaaatattcactgtacaccatataaacagatagttcc 437 Query: 553 tattccaagccaagaatgcagactgtacaagttcgcaatttccagtttcattgtga 608 | ||||| ||| || ||||| ||||| | ||| |||| ||||| ||||||||||| Sbjct: 436 aagtccaacccaggagtgcaggctgtagaggttagcaa-ttccactttcattgtga 382 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 374 aggaaggtgagcttctccagaaaccc 399 |||||||||||||||||||| ||||| Sbjct: 615 aggaaggtgagcttctccaggaaccc 590
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 48.1 bits (24), Expect = 0.034 Identities = 33/36 (91%) Strand = Plus / Plus Query: 493 ggggaagaagaaggtcaagaatccaaatatccactg 528 ||||||||||||||| | ||| |||||||||||||| Sbjct: 34787 ggggaagaagaaggtgacgaagccaaatatccactg 34822 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 374 aggaaggtgagcttctccagaaaccc 399 |||||||||||||||||||| ||||| Sbjct: 34668 aggaaggtgagcttctccaggaaccc 34693
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 48.1 bits (24), Expect = 0.034 Identities = 33/36 (91%) Strand = Plus / Plus Query: 493 ggggaagaagaaggtcaagaatccaaatatccactg 528 ||||||||||||||| | ||| |||||||||||||| Sbjct: 100645 ggggaagaagaaggtgacgaagccaaatatccactg 100680 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 374 aggaaggtgagcttctccagaaaccc 399 |||||||||||||||||||| ||||| Sbjct: 100526 aggaaggtgagcttctccaggaaccc 100551
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.034 Identities = 33/36 (91%) Strand = Plus / Plus Query: 493 ggggaagaagaaggtcaagaatccaaatatccactg 528 ||||||||||||||| | ||| |||||||||||||| Sbjct: 18739367 ggggaagaagaaggtgacgaagccaaatatccactg 18739402 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 374 aggaaggtgagcttctccagaaaccc 399 |||||||||||||||||||| ||||| Sbjct: 18739248 aggaaggtgagcttctccaggaaccc 18739273 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tatgtatttacatatacaca 93 |||||||||||||||||||| Sbjct: 14177035 tatgtatttacatatacaca 14177054
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.034 Identities = 33/36 (91%) Strand = Plus / Plus Query: 493 ggggaagaagaaggtcaagaatccaaatatccactg 528 ||||||||||||||| | ||| |||||||||||||| Sbjct: 18750220 ggggaagaagaaggtgacgaagccaaatatccactg 18750255 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 374 aggaaggtgagcttctccagaaaccc 399 |||||||||||||||||||| ||||| Sbjct: 18750101 aggaaggtgagcttctccaggaaccc 18750126 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tatgtatttacatatacaca 93 |||||||||||||||||||| Sbjct: 14185277 tatgtatttacatatacaca 14185296
>gb|AC155947.8| Mus musculus 6 BAC RP24-417N21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 156871 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 63 atatgtgcttgtatgtatttacatatacaca 93 |||||||| ||||||||| |||||||||||| Sbjct: 38830 atatgtgcatgtatgtatatacatatacaca 38800
>gb|AC153374.5| Mus musculus 6 BAC RP23-281H4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204379 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 63 atatgtgcttgtatgtatttacatatacaca 93 |||||||| ||||||||| |||||||||||| Sbjct: 177021 atatgtgcatgtatgtatatacatatacaca 176991
>gb|AC117630.11| Mus musculus chromosome 9, clone RP23-181A16, complete sequence Length = 245165 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 262 agctggggcaacagcagctaca 283 |||||||||||||||||||||| Sbjct: 76645 agctggggcaacagcagctaca 76624
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 312 ccaacgccgtgaagttcaccag 333 |||||||||||||||||||||| Sbjct: 320126 ccaacgccgtgaagttcaccag 320105
>emb|BX511062.12| Zebrafish DNA sequence from clone CH211-266M11 in linkage group 17, complete sequence Length = 131970 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 66 tgtgcttgtatgtatttacata 87 |||||||||||||||||||||| Sbjct: 116780 tgtgcttgtatgtatttacata 116759
>gb|AC068953.9| Homo sapiens chromosome 8, clone CTD1-2019D9, complete sequence Length = 176997 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 72 tgtatgtatttacatatacaca 93 |||||||||||||||||||||| Sbjct: 89379 tgtatgtatttacatatacaca 89400
>gb|AC080166.6| Homo sapiens BAC clone RP11-813C7 from 2, complete sequence Length = 179961 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 72 tgtatgtatttacatatacaca 93 |||||||||||||||||||||| Sbjct: 130488 tgtatgtatttacatatacaca 130509
>dbj|AP003468.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1205B2, complete sequence Length = 177515 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 tgtatgtatttacatatacaca 93 |||||||||||||||||||||| Sbjct: 113733 tgtatgtatttacatatacaca 113712
>gb|AC005358.1|AC005358 Homo sapiens chromosome 17, clone hRPK.746_E_8, complete sequence Length = 184886 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 tgtatgtatttacatatacaca 93 |||||||||||||||||||||| Sbjct: 61303 tgtatgtatttacatatacaca 61282
>dbj|AP004970.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT30P03, TM0148, complete sequence Length = 106000 Score = 44.1 bits (22), Expect = 0.54 Identities = 28/30 (93%) Strand = Plus / Minus Query: 374 aggaaggtgagcttctccagaaacccaagt 403 ||||| ||||||||||| |||||||||||| Sbjct: 98383 aggaatgtgagcttctctagaaacccaagt 98354
>ref|NM_103970.2| Arabidopsis thaliana unknown protein AT1G50900 mRNA, complete cds Length = 784 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 gcagccttggggaagaagaag 505 ||||||||||||||||||||| Sbjct: 151 gcagccttggggaagaagaag 131
>gb|AC119951.12| Mus musculus chromosome 9, clone RP24-448C4, complete sequence Length = 215131 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 455 caaggaagagcacccttcctc 475 ||||||||||||||||||||| Sbjct: 52464 caaggaagagcacccttcctc 52444
>ref|NM_001014957.1| Bos taurus pyrroline-5-carboxylate reductase family, member 2 (PYCR2), mRNA Length = 1698 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 362 cctgagctttggaggaaggtg 382 ||||||||||||||||||||| Sbjct: 1345 cctgagctttggaggaaggtg 1325
>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of 11 of the complete sequence Length = 613322 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 160 cactatggtgacagctaactttgtg 184 |||||||||||||| |||||||||| Sbjct: 399182 cactatggtgacagttaactttgtg 399158
>emb|AL354763.17| Human DNA sequence from clone RP11-357L1 on chromosome 13 Contains an ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G variant 1 (ATP6V1G1) pseudogene, complete sequence Length = 192963 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 160 cactatggtgacagctaactttgtg 184 |||||||||||||| |||||||||| Sbjct: 125720 cactatggtgacagttaactttgtg 125696
>emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 56 Length = 196247 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 atgatacatcgaagaacaata 65 ||||||||||||||||||||| Sbjct: 50083 atgatacatcgaagaacaata 50103
>emb|AL021890.1|ATT8O5 Arabidopsis thaliana DNA chromosome 4, BAC clone T8O5 (ESSAII project) Length = 83029 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 atgatacatcgaagaacaata 65 ||||||||||||||||||||| Sbjct: 48595 atgatacatcgaagaacaata 48615
>gb|AY114573.1| Arabidopsis thaliana unknown protein (At1g50910) mRNA, complete cds Length = 624 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 gcagccttggggaagaagaag 505 ||||||||||||||||||||| Sbjct: 85 gcagccttggggaagaagaag 65
>gb|AY072348.1| Arabidopsis thaliana unknown protein (At1g50910) mRNA, complete cds Length = 681 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 gcagccttggggaagaagaag 505 ||||||||||||||||||||| Sbjct: 110 gcagccttggggaagaagaag 90
>gb|AC084732.1|AC084732 Homo sapiens BAC clone RP11-368G2 from 4, complete sequence Length = 181576 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 178 ctttgtgaatttctgtttatgcagt 202 ||||||||||||||||| ||||||| Sbjct: 64099 ctttgtgaatttctgttgatgcagt 64123
>emb|BX818673.1|CNS0AAWR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL91ZA02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 699 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 gcagccttggggaagaagaag 505 ||||||||||||||||||||| Sbjct: 123 gcagccttggggaagaagaag 103
>gb|AC097484.3| Homo sapiens BAC clone RP11-147K6 from 4, complete sequence Length = 170217 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 ctttgtgaatttctgtttatgcagt 202 ||||||||||||||||| ||||||| Sbjct: 21976 ctttgtgaatttctgttgatgcagt 21952
>gb|AC079284.4|AC079284 Arabidopsis thaliana chromosome 1 BAC F8A12 genomic sequence, complete sequence Length = 105445 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 gcagccttggggaagaagaag 505 ||||||||||||||||||||| Sbjct: 55562 gcagccttggggaagaagaag 55542
>gb|AY085852.1| Arabidopsis thaliana clone 19056 mRNA, complete sequence Length = 723 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 gcagccttggggaagaagaag 505 ||||||||||||||||||||| Sbjct: 151 gcagccttggggaagaagaag 131
>gb|AC156160.4| Monodelphis domestica, clone XX-23H4, complete sequence Length = 143400 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 486 cagccttggggaagaagaaggtcaa 510 |||||||||||||| |||||||||| Sbjct: 76678 cagccttggggaaggagaaggtcaa 76702
>gb|BT021513.1| Bos taurus pyrroline-5-carboxylate reductase 1 (PYCR1), mRNA, complete cds Length = 1698 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 362 cctgagctttggaggaaggtg 382 ||||||||||||||||||||| Sbjct: 1345 cctgagctttggaggaaggtg 1325
>gb|AC163702.3| Gallus gallus BAC clone CH261-124A8 from chromosome ul, complete sequence Length = 179537 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 65 atgtgcttgtatgtatttacatatacaca 93 ||||| |||||||||| |||||||||||| Sbjct: 157732 atgtgattgtatgtatgtacatatacaca 157760
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 aaggcgagctggggcaacagc 276 ||||||||||||||||||||| Sbjct: 889202 aaggcgagctggggcaacagc 889222
>gb|L39071.1|MSGINT Mycobacterium paratuberculosis integrase gene, partial cds Length = 575 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 aaggcgagctggggcaacagc 276 ||||||||||||||||||||| Sbjct: 485 aaggcgagctggggcaacagc 505
>ref|NM_121336.2| Arabidopsis thaliana DNA binding / transcription factor AT5G13330 mRNA, complete cds Length = 927 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gcaacagcagctacaacaac 288 |||||||||||||||||||| Sbjct: 641 gcaacagcagctacaacaac 660
>gb|AC113538.14| Mus musculus chromosome 8, clone RP23-118F24, complete sequence Length = 206380 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 aacagcagctacaacaactg 290 |||||||||||||||||||| Sbjct: 171678 aacagcagctacaacaactg 171697
>ref|XM_636130.1| Dictyostelium discoideum hypothetical protein (DDB0206355), partial mRNA Length = 4209 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gcaacagcagctacaacaac 288 |||||||||||||||||||| Sbjct: 3156 gcaacagcagctacaacaac 3175
>ref|XM_516126.1| PREDICTED: Pan troglodytes dedicator of cytokinesis 10 (LOC459984), mRNA Length = 6467 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tcagatcattcattttcaat 137 |||||||||||||||||||| Sbjct: 825 tcagatcattcattttcaat 806
>gb|AC161505.4| Mus musculus chromosome 8, clone RP24-307K17, complete sequence Length = 215514 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 aacagcagctacaacaactg 290 |||||||||||||||||||| Sbjct: 201072 aacagcagctacaacaactg 201053
>gb|AC150554.1| Drosophila melanogaster clone BACR21O10, complete sequence Length = 193926 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ctttgtgaatttctgtttat 197 |||||||||||||||||||| Sbjct: 36279 ctttgtgaatttctgtttat 36298
>gb|AC124027.2| Mus musculus chromosome X clone RP21-282L18 map qA7.2, complete sequence Length = 147432 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 aagaaggtcaagaatccaaa 519 |||||||||||||||||||| Sbjct: 134663 aagaaggtcaagaatccaaa 134644
>gb|AC124026.2| Mus musculus chromosome X clone RP21-564N13 map qA7.2, complete sequence Length = 178239 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 aagaaggtcaagaatccaaa 519 |||||||||||||||||||| Sbjct: 108035 aagaaggtcaagaatccaaa 108016
>gb|AC124022.2| Mus musculus chromosome X clone RP21-566N22 map qA7.2, complete sequence Length = 163107 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 aagaaggtcaagaatccaaa 519 |||||||||||||||||||| Sbjct: 9856 aagaaggtcaagaatccaaa 9837
>gb|AC124021.2| Mus musculus chromosome X clone RP21-566N22 map qA7.2, complete sequence Length = 152943 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 aagaaggtcaagaatccaaa 519 |||||||||||||||||||| Sbjct: 4015 aagaaggtcaagaatccaaa 3996
>gb|AC124020.2| Mus musculus chromosome X clone RP21-564N13 map qA7.2, complete sequence Length = 155466 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 aagaaggtcaagaatccaaa 519 |||||||||||||||||||| Sbjct: 100091 aagaaggtcaagaatccaaa 100072
>gb|AY514485.1| Avian infectious bronchitis virus strain Cal99, complete genome Length = 27693 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 aagattccaagaagtacgtg 453 |||||||||||||||||||| Sbjct: 12492 aagattccaagaagtacgtg 12511
>gb|AY560861.1| Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g13330) mRNA, complete cds Length = 639 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gcaacagcagctacaacaac 288 |||||||||||||||||||| Sbjct: 552 gcaacagcagctacaacaac 571
>ref|XM_718498.1| Candida albicans SC5314 putative protein kinase (CaO19_4909), mRNA Length = 2199 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gcaacagcagctacaacaac 288 |||||||||||||||||||| Sbjct: 84 gcaacagcagctacaacaac 103
>ref|XM_718310.1| Candida albicans SC5314 putative protein kinase (CaO19_12375), mRNA Length = 2199 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gcaacagcagctacaacaac 288 |||||||||||||||||||| Sbjct: 84 gcaacagcagctacaacaac 103
>gb|AC123605.8| Mus musculus chromosome 5, clone RP24-176O2, complete sequence Length = 211657 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tagatgtttaattatacatg 47 |||||||||||||||||||| Sbjct: 153663 tagatgtttaattatacatg 153644
>gb|AC131669.3| Mus musculus BAC clone RP23-307E9 from chromosome 7, complete sequence Length = 189956 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tatgtatttacatatacaca 93 |||||||||||||||||||| Sbjct: 141835 tatgtatttacatatacaca 141816
>gb|AC137096.10| Mus musculus chromosome 8, clone RP24-473D4, complete sequence Length = 149463 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 aacagcagctacaacaactg 290 |||||||||||||||||||| Sbjct: 76266 aacagcagctacaacaactg 76247
>gb|BT012250.1| Arabidopsis thaliana At5g13330 gene, complete cds Length = 639 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gcaacagcagctacaacaac 288 |||||||||||||||||||| Sbjct: 552 gcaacagcagctacaacaac 571
>gb|AC154644.2| Mus musculus BAC clone RP23-278G20 from chromosome 14, complete sequence Length = 175685 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 62 aatatgtgcttgtatgtatttacatata 89 ||||||| | |||||||||||||||||| Sbjct: 97946 aatatgtacatgtatgtatttacatata 97973
>gb|AY368927.1| Phanacis centaureae cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1078 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tttaattatacatgatacat 53 |||||||||||||||||||| Sbjct: 1045 tttaattatacatgatacat 1064
>gb|BT011609.1| Arabidopsis thaliana At5g13330 mRNA, complete cds Length = 998 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gcaacagcagctacaacaac 288 |||||||||||||||||||| Sbjct: 793 gcaacagcagctacaacaac 812
>gb|AC121884.3| Mus musculus BAC clone RP24-138L20 from chromosome 15, complete sequence Length = 204711 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 ttacatatacacaaggaaga 100 |||||||||||||||||||| Sbjct: 15698 ttacatatacacaaggaaga 15679
>gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome 12, complete sequence Length = 183140 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tatgtatttacatatacaca 93 |||||||||||||||||||| Sbjct: 124624 tatgtatttacatatacaca 124605
>gb|AC125179.4| Mus musculus BAC clone RP23-321N8 from chromosome 16, complete sequence Length = 193474 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 tgtgcttgtatgtatttacatata 89 ||||||||||||||| |||||||| Sbjct: 136578 tgtgcttgtatgtatatacatata 136555
>emb|AJ581422.1|HLI581422 Hemerocallis littorea plastid partial matK gene for maturase K, specimen voucher Chase 3833 K Length = 820 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 aaccctgtggttcttcaagg 259 |||||||||||||||||||| Sbjct: 382 aaccctgtggttcttcaagg 401
>gb|AC123858.4| Mus musculus BAC clone RP23-345K19 from chromosome 15, complete sequence Length = 203182 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 ttacatatacacaaggaaga 100 |||||||||||||||||||| Sbjct: 168425 ttacatatacacaaggaaga 168406
>gb|AC087428.3| Homo sapiens chromosome 3 clone RP11-18I13 map 3p, complete sequence Length = 149633 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 62 aatatgtgcttgtatgtatttacatatacaca 93 ||||| ||||||||||||| |||||| ||||| Sbjct: 126035 aatatatgcttgtatgtatgtacatacacaca 126004
>ref|XM_650427.1| Entamoeba histolytica HM-1:IMSS Pten 3-phosphoinositide phosphatase (27.t00028) partial mRNA Length = 1308 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 taaacgaagattccaagaag 447 |||||||||||||||||||| Sbjct: 36 taaacgaagattccaagaag 55
>emb|BX640508.9| Zebrafish DNA sequence from clone RP71-56K2 in linkage group 6, complete sequence Length = 154639 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 tcattcattttcaatcggag 142 |||||||||||||||||||| Sbjct: 127703 tcattcattttcaatcggag 127722
>emb|AL356794.10| Human DNA sequence from clone RP11-551A11 on chromosome 6 Contains a ribosomal protein S3A (40S ribosomal protein S3a, v-fos transformation effector protein 1) (RPS3A)(FTE1) pseudogene, complete sequence Length = 164439 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 cttgtatgtatttacatatacaca 93 ||||||||||| |||||||||||| Sbjct: 101879 cttgtatgtatgtacatatacaca 101902
>emb|AL121586.31|HSDJ477O4 Human DNA sequence from clone RP3-477O4 on chromosome 20 Contains a novel gene, the GDF5 gene for growth differentiation factor 5, the CEP2 gene for centrosomal protein 2, two novel genes, a pseudogene similar to sialyltransferase proteins, the C20orf173 gene for chromosome 20 open reading frame 173, the SDBCAG84 gene for serologically defined breast cancer antigen 84, the RPL36P4 locus for ribosomal protein L36 pseudogene 4, the 3' end of the FER1L4 gene for fer-1-like 4 (C. elegans) and three CpG islands, complete sequence Length = 151903 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 tctgtttatgcagtacactt 208 |||||||||||||||||||| Sbjct: 101040 tctgtttatgcagtacactt 101059
>emb|AL078599.19|HSDJ991C6 Human DNA sequence from clone RP5-991C6 on chromosome 6q14.1-15 Contains the 5' end of a novel gene (FLJ20037, FLJ31495), a ribosomal protein L10 (RPL10) pseudogene, two novel genes and a CpG island, complete sequence Length = 128995 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 tgtatgtatttacatatacacaag 95 |||||||||||||||| ||||||| Sbjct: 27378 tgtatgtatttacatacacacaag 27401
>emb|AL031778.1|HS34B21 Human DNA sequence from clone RP1-34B21 on chromosome 6p12.1-21.1 Contains part of a novel gene, the gene for a novel BZRP (peripheral benzodiazapine receptor (MBR,PBR, PBKS, IBP, Isoquinoline-binding protein)) LIKE protein, the APOBEC2 gene for apolipoprotein B mRNA editing enzyme (catalytic polypeptide-like 2), a novel gene and the NFYA gene for nuclear transcription factor Y, alpha (CCAAT-Binding transcription factor subunit B, CBF-B, CAAT-Box DNA binding protein subunit A), complete sequence Length = 154394 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 atttataaaatagctgctta 25 |||||||||||||||||||| Sbjct: 140641 atttataaaatagctgctta 140660
>emb|X76053.1|SCDPB3 S.cerevisiae (s288c) RIF1, DPB3, YmL27 and SNF5 genes Length = 32421 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ggcaacagcagctacaacaa 287 |||||||||||||||||||| Sbjct: 25121 ggcaacagcagctacaacaa 25102
>emb|AL163572.1|ATT22N19 Arabidopsis thaliana DNA chromosome 5, BAC clone T22N19 (ESSA project) Length = 68948 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gcaacagcagctacaacaac 288 |||||||||||||||||||| Sbjct: 17538 gcaacagcagctacaacaac 17557
>emb|AL163491.1|ATT31B5 Arabidopsis thaliana DNA chromosome 5, BAC clone T31B5 (ESSA project) Length = 82612 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gcaacagcagctacaacaac 288 |||||||||||||||||||| Sbjct: 71175 gcaacagcagctacaacaac 71194
>emb|BX544884.8| Zebrafish DNA sequence from clone DKEY-227M3 in linkage group 8, complete sequence Length = 160755 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 tcattcattttcaatcggag 142 |||||||||||||||||||| Sbjct: 5301 tcattcattttcaatcggag 5320
>emb|AL928931.15| Mouse DNA sequence from clone RP23-419H3 on chromosome 2, complete sequence Length = 148740 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 tttgttatcagatcattcat 130 |||||||||||||||||||| Sbjct: 62179 tttgttatcagatcattcat 62160
>gb|AC151838.6| Mus musculus BAC clone RP23-226C6 from chromosome 7, complete sequence Length = 222398 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tatgtatttacatatacaca 93 |||||||||||||||||||| Sbjct: 213404 tatgtatttacatatacaca 213423
>gb|AC092954.4| Homo sapiens 3 BAC RP11-368I23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166452 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 atgtttaattatacatgata 50 |||||||||||||||||||| Sbjct: 47829 atgtttaattatacatgata 47810
>emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 in linkage group 16, complete sequence Length = 165294 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 tgtatgtatttacatataca 91 |||||||||||||||||||| Sbjct: 34811 tgtatgtatttacatataca 34830
>gb|AE005934.1| Caulobacter crescentus CB15 section 260 of 359 of the complete genome Length = 11398 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 ccaacgccgtgaagttcacc 331 |||||||||||||||||||| Sbjct: 7158 ccaacgccgtgaagttcacc 7139
>gb|AE005747.1| Caulobacter crescentus CB15 section 73 of 359 of the complete genome Length = 11070 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 ccaacgccgtgaagttcacc 331 |||||||||||||||||||| Sbjct: 7049 ccaacgccgtgaagttcacc 7030
>gb|AC098615.2| Homo sapiens chromosome 3 clone RP11-268I20, complete sequence Length = 167486 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 caaggaagatgcatgacatt 111 |||||||||||||||||||| Sbjct: 27020 caaggaagatgcatgacatt 27039
>dbj|AB200246.1| Saccharomyces cerevisiae BIO6 gene for biotin biosynthesis enzyme, partial cds, strain:Sake yeast kyokai No.7, 38 Kb cosmid insert Length = 37737 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ggcaacagcagctacaacaa 287 |||||||||||||||||||| Sbjct: 6864 ggcaacagcagctacaacaa 6845
>gb|AC087620.6| Homo sapiens chromosome 8, clone RP11-35G22, complete sequence Length = 154034 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 agatcattcattttcaatcg 139 |||||||||||||||||||| Sbjct: 119712 agatcattcattttcaatcg 119731
>ref|XM_936892.1| PREDICTED: Homo sapiens similar to CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase (Beta-galactoside alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S) (Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase) (ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (S... (LOC343705), mRNA Length = 870 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tctgtttatgcagtacactt 208 |||||||||||||||||||| Sbjct: 766 tctgtttatgcagtacactt 747
>ref|XM_293157.3| PREDICTED: Homo sapiens similar to CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase (Beta-galactoside alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S) (Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase) (ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (S... (LOC343705), mRNA Length = 870 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tctgtttatgcagtacactt 208 |||||||||||||||||||| Sbjct: 766 tctgtttatgcagtacactt 747
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 ccaacgccgtgaagttcacc 331 |||||||||||||||||||| Sbjct: 1503268 ccaacgccgtgaagttcacc 1503287
>gb|AC154572.2| Mus musculus BAC clone RP23-392G15 from chromosome 13, complete sequence Length = 185090 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tgtatttacatatacacaag 95 |||||||||||||||||||| Sbjct: 116622 tgtatttacatatacacaag 116641
>gb|AC155930.3| Mus musculus BAC clone RP23-412K9 from chromosome 7, complete sequence Length = 187418 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 aagaatgcagactgtacaag 583 |||||||||||||||||||| Sbjct: 136853 aagaatgcagactgtacaag 136834
>gb|AC154432.2| Mus musculus BAC clone RP24-182L14 from chromosome 13, complete sequence Length = 161618 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tgtatttacatatacacaag 95 |||||||||||||||||||| Sbjct: 51421 tgtatttacatatacacaag 51440
>gb|AC067871.6|AC067871 Homo sapiens chromosome 8, clone CTD-2026F11, complete sequence Length = 181118 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ttgtatgtatttacatatac 90 |||||||||||||||||||| Sbjct: 31872 ttgtatgtatttacatatac 31891
>gb|AC009252.9|AC009252 Drosophila melanogaster, chromosome 2L, region 38A-38A, BAC clone BACR22E16, complete sequence Length = 164361 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 72 tgtatgtatttacatatacacaaggaag 99 ||||| ||| |||||||||||||||||| Sbjct: 29204 tgtatatatgtacatatacacaaggaag 29177
>gb|AC007984.4|AC007984 Drosophila melanogaster, chromosome 3R, region 97D-97E, BAC clone BACR05C10, complete sequence Length = 174894 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ctttgtgaatttctgtttat 197 |||||||||||||||||||| Sbjct: 145391 ctttgtgaatttctgtttat 145410
>gb|AC008216.3|AC008216 Drosophila melanogaster, chromosome 3R, region 97E-97E, BAC clone BACR27C22, complete sequence Length = 179486 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ctttgtgaatttctgtttat 197 |||||||||||||||||||| Sbjct: 10877 ctttgtgaatttctgtttat 10896
>gb|AC154376.3| Mus musculus BAC clone RP23-71H16 from chromosome 13, complete sequence Length = 169417 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 atatgtgcttgtatgtattt 82 |||||||||||||||||||| Sbjct: 49927 atatgtgcttgtatgtattt 49908
>gb|AC109638.2| Homo sapiens BAC clone RP11-495B16 from 2, complete sequence Length = 104787 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tatgtatttacatatacaca 93 |||||||||||||||||||| Sbjct: 50582 tatgtatttacatatacaca 50601
>gb|AC107070.4| Homo sapiens BAC clone RP11-293H4 from 2, complete sequence Length = 107972 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gcagcactatggtgacagct 175 |||||||||||||||||||| Sbjct: 2802 gcagcactatggtgacagct 2821
>gb|AC011739.7| Homo sapiens BAC clone RP11-68H19 from 2, complete sequence Length = 171811 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 tcagatcattcattttcaat 137 |||||||||||||||||||| Sbjct: 148633 tcagatcattcattttcaat 148652
>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10, complete sequence Length = 142737 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tatgtatttacatatacaca 93 |||||||||||||||||||| Sbjct: 49108 tatgtatttacatatacaca 49127
>emb|BX248502.17| Zebrafish DNA sequence from clone DKEY-284M10 in linkage group 8, complete sequence Length = 215273 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tgtgcttgtatgtatttaca 85 |||||||||||||||||||| Sbjct: 10747 tgtgcttgtatgtatttaca 10728
>gb|AC124139.9| Mus musculus chromosome 1, clone RP24-78G8, complete sequence Length = 216124 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 591 tttccagtttcattgtgatt 610 |||||||||||||||||||| Sbjct: 137981 tttccagtttcattgtgatt 138000
>dbj|AB017318.1| Hemerocallis fulva chloroplast gene for maturase, partial cds Length = 1124 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 aaccctgtggttcttcaagg 259 |||||||||||||||||||| Sbjct: 677 aaccctgtggttcttcaagg 696
>emb|CT025694.11| Mouse DNA sequence from clone RP24-66N5 on chromosome 14, complete sequence Length = 203022 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 62 aatatgtgcttgtatgtatttacatata 89 ||||||| | |||||||||||||||||| Sbjct: 113739 aatatgtacatgtatgtatttacatata 113766
>emb|Z36157.1|SCYBR288C S.cerevisiae chromosome II reading frame ORF YBR288c Length = 1815 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ggcaacagcagctacaacaa 287 |||||||||||||||||||| Sbjct: 1086 ggcaacagcagctacaacaa 1067
>gb|AE003759.3| Drosophila melanogaster chromosome 3R, section 97 of 118 of the complete sequence Length = 222554 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ctttgtgaatttctgtttat 197 |||||||||||||||||||| Sbjct: 34944 ctttgtgaatttctgtttat 34963
>gb|AE003664.3| Drosophila melanogaster chromosome 2L, section 73 of 83 of the complete sequence Length = 266287 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 72 tgtatgtatttacatatacacaaggaag 99 ||||| ||| |||||||||||||||||| Sbjct: 210638 tgtatatatgtacatatacacaaggaag 210611
>gb|AC160565.2| Pan troglodytes BAC clone CH251-539H3 from chromosome unknown, complete sequence Length = 166497 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 tctgtttatgcagtacactt 208 |||||||||||||||||||| Sbjct: 84487 tctgtttatgcagtacactt 84506
>emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in linkage group 16, complete sequence Length = 184760 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 tgtatgtatttacatataca 91 |||||||||||||||||||| Sbjct: 131121 tgtatgtatttacatataca 131102
>gb|DQ083171.1| Phrynocephalus przewalskii microsatellite Phr72 sequence Length = 813 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 agaatccaaatatccactga 529 |||||||||||||||||||| Sbjct: 530 agaatccaaatatccactga 511
>gb|AC174458.2| Mus musculus BAC clone RP23-282D14 from chromosome 13, complete sequence Length = 205673 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 atatgtgcttgtatgtattt 82 |||||||||||||||||||| Sbjct: 197498 atatgtgcttgtatgtattt 197517
>gb|AC126052.4| Mus musculus BAC clone RP23-277H6 from 7, complete sequence Length = 202833 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 aagaatgcagactgtacaag 583 |||||||||||||||||||| Sbjct: 61623 aagaatgcagactgtacaag 61604
>gb|AC087431.3| Homo sapiens chromosome 3 clone RP11-775C23 map 3p, complete sequence Length = 196745 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 62 aatatgtgcttgtatgtatttacatatacaca 93 ||||| ||||||||||||| |||||| ||||| Sbjct: 8227 aatatatgcttgtatgtatgtacatacacaca 8196
>gb|L33781.1|ATHCPBP Arabidopsis thaliana (strain Ecotype RLD) cab3 promoter-binding protein mRNA, complete cds Length = 771 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 caacagcagctacaacaact 289 |||||||||||||||||||| Sbjct: 247 caacagcagctacaacaact 266
>emb|AL808110.7| Mouse DNA sequence from clone RP23-62O13 on chromosome X, complete sequence Length = 175963 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 aagaaggtcaagaatccaaa 519 |||||||||||||||||||| Sbjct: 77978 aagaaggtcaagaatccaaa 77959
>emb|AL591970.10| Mouse DNA sequence from clone RP23-190L21 on chromosome 2, complete sequence Length = 165908 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 attttgttatcagatcattc 128 |||||||||||||||||||| Sbjct: 83096 attttgttatcagatcattc 83115
>gb|M36482.1|YSCSNF5 S.cerevisiae SNF5 protein gene, complete cds Length = 4450 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ggcaacagcagctacaacaa 287 |||||||||||||||||||| Sbjct: 92 ggcaacagcagctacaacaa 73
>dbj|AB014594.2| Homo sapiens mRNA for KIAA0694 protein, partial cds Length = 4008 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tcagatcattcattttcaat 137 |||||||||||||||||||| Sbjct: 1035 tcagatcattcattttcaat 1016 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,974,119 Number of Sequences: 3902068 Number of extensions: 6974119 Number of successful extensions: 154702 Number of sequences better than 10.0: 127 Number of HSP's better than 10.0 without gapping: 129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 154152 Number of HSP's gapped (non-prelim): 540 length of query: 617 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 594 effective length of database: 17,143,297,704 effective search space: 10183118836176 effective search space used: 10183118836176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)