>emb|AJ401333.1|SHY401333 Saccharum hybrid cultivar R570 microsatellite DNA, clone mSSCIR56
          Length = 838

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 49  acatcaaaataattttacatgt 70
           ||||||||||||||||||||||
Sbjct: 289 acatcaaaataattttacatgt 268

>gb|AC159317.3| Mus musculus BAC clone RP23-76I20 from chromosome 16, complete sequence
          Length = 224160

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 45    gggcacatcaaaataattttacatg 69
             |||||||| ||||||||||||||||
Sbjct: 16057 gggcacatgaaaataattttacatg 16081

>gb|AC121785.3| Mus musculus BAC clone RP23-382K4 from chromosome 3, complete
            sequence
          Length = 197272

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 176  tttcttctcatcctcttcctc 196
            |||||||||||||||||||||
Sbjct: 5576 tttcttctcatcctcttcctc 5596

>gb|AC122941.3| Mus musculus BAC clone RP23-1E3 from chromosome 8, complete sequence
          Length = 244220

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 182    ctcatcctcttcctctgcaca 202
              |||||||||||||||||||||
Sbjct: 148893 ctcatcctcttcctctgcaca 148913

>gb|AC135362.3| Mus musculus BAC clone RP23-286J13 from chromosome 8, complete sequence
          Length = 173357

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 182    ctcatcctcttcctctgcaca 202
              |||||||||||||||||||||
Sbjct: 104580 ctcatcctcttcctctgcaca 104560

>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete
             sequence
          Length = 184128

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 162   atgagaaccacaagtttcttc 182
             |||||||||||||||||||||
Sbjct: 85294 atgagaaccacaagtttcttc 85274

>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence
          Length = 218079

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 162    atgagaaccacaagtttcttc 182
              |||||||||||||||||||||
Sbjct: 184501 atgagaaccacaagtttcttc 184481

>gb|AC132456.5| Mus musculus BAC clone RP23-134L6 from 1, complete sequence
          Length = 204402

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    acaaagtgaaaggtgccactg 251
              |||||||||||||||||||||
Sbjct: 181317 acaaagtgaaaggtgccactg 181337

>gb|AC138306.4| Mus musculus BAC clone RP24-240E9 from 16, complete sequence
          Length = 170196

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 45    gggcacatcaaaataattttacatg 69
             |||||||| ||||||||||||||||
Sbjct: 57990 gggcacatgaaaataattttacatg 57966

>emb|BX510987.7| Zebrafish DNA sequence from clone DKEY-43H1 in linkage group 20, complete
              sequence
          Length = 124927

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 55     aaataattttacatgtgtaca 75
              |||||||||||||||||||||
Sbjct: 113220 aaataattttacatgtgtaca 113200

>gb|AC133102.4| Mus musculus BAC clone RP23-173H19 from 1, complete sequence
          Length = 199590

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   acaaagtgaaaggtgccactg 251
             |||||||||||||||||||||
Sbjct: 14207 acaaagtgaaaggtgccactg 14227

>gb|AY731540.1| Arachis hypogaea clone PM723 microsatellite sequence
          Length = 350

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 ttctcatcctcttcctctgc 199
           ||||||||||||||||||||
Sbjct: 220 ttctcatcctcttcctctgc 201

>gb|AC127951.4| Rattus norvegicus 18 BAC CH230-150D9 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 164101

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    ttcttctcatcctcttcctc 196
              ||||||||||||||||||||
Sbjct: 163360 ttcttctcatcctcttcctc 163341

>gb|AY526428.1| Arachis hypogaea clone PM672 microsatellite sequence
          Length = 439

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 ttctcatcctcttcctctgc 199
           ||||||||||||||||||||
Sbjct: 255 ttctcatcctcttcctctgc 236

>gb|AY526385.1| Arachis hypogaea clone PM629 microsatellite sequence
          Length = 450

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 180 ttctcatcctcttcctctgc 199
           ||||||||||||||||||||
Sbjct: 162 ttctcatcctcttcctctgc 181

>gb|AC096226.12| Rattus norvegicus 18 BAC CH230-26M18 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 232962

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   ttcttctcatcctcttcctc 196
             ||||||||||||||||||||
Sbjct: 50921 ttcttctcatcctcttcctc 50902

>ref|XM_387760.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07584.1)
           partial mRNA
          Length = 1500

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 acaagtttcttctcatcctc 190
           ||||||||||||||||||||
Sbjct: 113 acaagtttcttctcatcctc 94

>gb|AC092830.7| Homo sapiens 12 BAC RP11-146L7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 164969

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 250  tgttagaaatatttatgaat 269
            ||||||||||||||||||||
Sbjct: 4568 tgttagaaatatttatgaat 4549

>emb|AL589931.14| Human DNA sequence from clone RP11-507C10 on chromosome 6q25.2-26
              Contains the 5' end of the TCTEL1 gene for
              t-complex-associated-testis-expressed 1-like 1, the SYTL3
              gene for synaptotagmin-like 3, a novel pseudogene, the VIL2
              gene for villin 2, a novel gene, the 3' end of a novel gene
              and two CpG islands, complete sequence
          Length = 215705

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    tcttctcatcctcttcctct 197
              ||||||||||||||||||||
Sbjct: 210299 tcttctcatcctcttcctct 210318

>gb|AC112026.4| Rattus norvegicus 19 BAC CH230-105L11 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 237539

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     caagggcacatcaaaataat 61
              ||||||||||||||||||||
Sbjct: 128315 caagggcacatcaaaataat 128296

>emb|AL645969.20| Mouse DNA sequence from clone RP23-101H2 on chromosome 11 Contains a
             novel gene, complete sequence
          Length = 154687

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   ttcttctcatcctcttcctc 196
             ||||||||||||||||||||
Sbjct: 58499 ttcttctcatcctcttcctc 58518

>emb|BX323842.8| Zebrafish DNA sequence from clone CH211-1M7, complete sequence
          Length = 162929

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    aagtttcttctcatcctctt 192
              ||||||||||||||||||||
Sbjct: 100989 aagtttcttctcatcctctt 101008

>gb|AC013458.5| Homo sapiens BAC clone RP11-85M11 from 3, complete sequence
          Length = 213532

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    aaaataattttacatgtgta 73
             ||||||||||||||||||||
Sbjct: 22856 aaaataattttacatgtgta 22875

>gb|AC009471.5| Homo sapiens BAC clone RP11-168K7 from 2, complete sequence
          Length = 172445

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    agtttcttctcatcctcttc 193
              ||||||||||||||||||||
Sbjct: 155858 agtttcttctcatcctcttc 155839

>gb|AC010663.6| Drosophila melanogaster 3L BAC RP98-17M18 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 193914

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    aaaataattttacatgtgta 73
             ||||||||||||||||||||
Sbjct: 72599 aaaataattttacatgtgta 72580

>gb|AE003599.2| Drosophila melanogaster chromosome 3L, section 80 of 83 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     aaaataattttacatgtgta 73
              ||||||||||||||||||||
Sbjct: 242548 aaaataattttacatgtgta 242529

>emb|CR394545.9| Zebrafish DNA sequence from clone CH211-103E6 in linkage group 15,
              complete sequence
          Length = 177018

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    tgttagaaatatttatgaat 269
              ||||||||||||||||||||
Sbjct: 113450 tgttagaaatatttatgaat 113431

>gb|AC171241.2| Mus musculus BAC clone RP23-94E5 from chromosome 14, complete sequence
          Length = 244795

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 81     atatttctgcaagtgtaagtgcac 104
              |||||||||||| |||||||||||
Sbjct: 163007 atatttctgcaattgtaagtgcac 162984

>emb|AL831752.7| Mouse DNA sequence from clone RP23-414J22 on chromosome X, complete
             sequence
          Length = 169807

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   ttcttctcatcctcttcctc 196
             ||||||||||||||||||||
Sbjct: 52801 ttcttctcatcctcttcctc 52782

>emb|AL713880.1|CNS07YOW Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
             clone 366M1 of library Caltech CITB-BAC from chromosome 11
             of Mus musculus (mouse)
          Length = 111702

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   ttcttctcatcctcttcctc 196
             ||||||||||||||||||||
Sbjct: 94995 ttcttctcatcctcttcctc 95014

>emb|AL713838.1|CNS07YOS Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
              clone 278H24 of library Caltech CITB-BAC from chromosome 11
              of Mus musculus (mouse)
          Length = 150493

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    ttcttctcatcctcttcctc 196
              ||||||||||||||||||||
Sbjct: 127501 ttcttctcatcctcttcctc 127482

>emb|AL603867.7| Mouse DNA sequence from clone RP23-237G11 on chromosome 15, complete
             sequence
          Length = 112729

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   tttcttctcatcctcttcct 195
             ||||||||||||||||||||
Sbjct: 29972 tttcttctcatcctcttcct 29953


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,236,374
Number of Sequences: 3902068
Number of extensions: 4236374
Number of successful extensions: 98023
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97973
Number of HSP's gapped (non-prelim): 50
length of query: 343
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 321
effective length of database: 17,147,199,772
effective search space: 5504251126812
effective search space used: 5504251126812
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)