ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2g18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPCKC_CHICK (P05153) Phosphoenolpyruvate carboxykinase, cytosoli... 30 2.1
2DEOC_BDEBA (Q6MGR8) Deoxyribose-phosphate aldolase (EC 4.1.2.4) ... 28 8.0
3PAM17_CANGA (Q6FJJ0) Presequence translocated-associated motor s... 28 8.0

>PPCKC_CHICK (P05153) Phosphoenolpyruvate carboxykinase, cytosolic [GTP] (EC|
           4.1.1.32) (Phosphoenolpyruvate carboxylase) (PEPCK-C)
          Length = 622

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 78  QGDSKGHNPK*RQPQSSELVGCVMKSVAVCRGSRESGKLLLDL 206
           QGD +   P+ R+   S    C  +S+ +C GS E  K +LD+
Sbjct: 17  QGDLESLPPQVREFIESNAKLCQPESIHICDGSEEENKKILDI 59



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>DEOC_BDEBA (Q6MGR8) Deoxyribose-phosphate aldolase (EC 4.1.2.4)|
           (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA)
          Length = 220

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 31  LQPVKGNLKAKVKLANKETVKVIIQNS 111
           L  V+ ++KA V+ AN  TVKVII+ S
Sbjct: 102 LDYVRDDIKAVVQAANGHTVKVIIETS 128



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>PAM17_CANGA (Q6FJJ0) Presequence translocated-associated motor subunit PAM17,|
           mitochondrial precursor
          Length = 186

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 43  KGNLKAKVKLANKETVKVIIQNSDSHSLQS 132
           KGN  A+  L NKE +K +IQN    S QS
Sbjct: 120 KGNKLAQYNLKNKEFLKHVIQNRVDASSQS 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,098,985
Number of Sequences: 219361
Number of extensions: 585370
Number of successful extensions: 1285
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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