ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2g13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT019164.1| Zea mays clone Contig829.F mRNA sequence 40 4.9
2emb|AL671983.18| Mouse DNA sequence from clone RP23-232B3 on chr... 40 4.9
3gb|AC145551.5| Mus musculus BAC clone RP23-73O14 from chromosome... 40 4.9
4gb|AY105580.1| Zea mays PCO127552 mRNA sequence 40 4.9
5dbj|AP006540.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 4.9

>gb|BT019164.1| Zea mays clone Contig829.F mRNA sequence
          Length = 1109

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 302 ttcgactctgccacggtaacccggatctgnctgcc 336
           ||||||||||| || ||||| |||||||| |||||
Sbjct: 300 ttcgactctgctaccgtaacacggatctgtctgcc 334



to top

>emb|AL671983.18| Mouse DNA sequence from clone RP23-232B3 on chromosome X, complete
             sequence
          Length = 176577

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 258   taaccagagtgaggntatgttaa 280
             |||||||||||||| ||||||||
Sbjct: 24411 taaccagagtgaggttatgttaa 24433



to top

>gb|AC145551.5| Mus musculus BAC clone RP23-73O14 from chromosome ul, complete sequence
          Length = 204610

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    catctatgctgctgagcata 83
             ||||||||||||||||||||
Sbjct: 83713 catctatgctgctgagcata 83732



to top

>gb|AY105580.1| Zea mays PCO127552 mRNA sequence
          Length = 1133

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 302 ttcgactctgccacggtaacccggatctgnctgcc 336
           ||||||||||| || ||||| |||||||| |||||
Sbjct: 831 ttcgactctgctaccgtaacacggatctgtctgcc 797



to top

>dbj|AP006540.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01C03, TM0559,
             complete sequence
          Length = 80535

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    catgaacaaacattcaaaag 41
             ||||||||||||||||||||
Sbjct: 24716 catgaacaaacattcaaaag 24735


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,776,068
Number of Sequences: 3902068
Number of extensions: 1776068
Number of successful extensions: 26068
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26063
Number of HSP's gapped (non-prelim): 5
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top