Clone Name | rbasd2g13 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
---|---|---|---|
1 | gb|BT019164.1| Zea mays clone Contig829.F mRNA sequence | 40 | 4.9 |
2 | emb|AL671983.18| Mouse DNA sequence from clone RP23-232B3 on chr... | 40 | 4.9 |
3 | gb|AC145551.5| Mus musculus BAC clone RP23-73O14 from chromosome... | 40 | 4.9 |
4 | gb|AY105580.1| Zea mays PCO127552 mRNA sequence | 40 | 4.9 |
5 | dbj|AP006540.1| Lotus japonicus genomic DNA, chromosome 2, clone... | 40 | 4.9 |
>gb|BT019164.1| Zea mays clone Contig829.F mRNA sequence Length = 1109 Score = 40.1 bits (20), Expect = 4.9 Identities = 31/35 (88%) Strand = Plus / Plus Query: 302 ttcgactctgccacggtaacccggatctgnctgcc 336 ||||||||||| || ||||| |||||||| ||||| Sbjct: 300 ttcgactctgctaccgtaacacggatctgtctgcc 334
>emb|AL671983.18| Mouse DNA sequence from clone RP23-232B3 on chromosome X, complete sequence Length = 176577 Score = 40.1 bits (20), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 258 taaccagagtgaggntatgttaa 280 |||||||||||||| |||||||| Sbjct: 24411 taaccagagtgaggttatgttaa 24433
>gb|AC145551.5| Mus musculus BAC clone RP23-73O14 from chromosome ul, complete sequence Length = 204610 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 catctatgctgctgagcata 83 |||||||||||||||||||| Sbjct: 83713 catctatgctgctgagcata 83732
>gb|AY105580.1| Zea mays PCO127552 mRNA sequence Length = 1133 Score = 40.1 bits (20), Expect = 4.9 Identities = 31/35 (88%) Strand = Plus / Minus Query: 302 ttcgactctgccacggtaacccggatctgnctgcc 336 ||||||||||| || ||||| |||||||| ||||| Sbjct: 831 ttcgactctgctaccgtaacacggatctgtctgcc 797
>dbj|AP006540.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01C03, TM0559, complete sequence Length = 80535 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 catgaacaaacattcaaaag 41 |||||||||||||||||||| Sbjct: 24716 catgaacaaacattcaaaag 24735 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,776,068 Number of Sequences: 3902068 Number of extensions: 1776068 Number of successful extensions: 26068 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26063 Number of HSP's gapped (non-prelim): 5 length of query: 369 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 347 effective length of database: 17,147,199,772 effective search space: 5950078320884 effective search space used: 5950078320884 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)