ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RK22_WHEAT (Q95H48) Chloroplast 50S ribosomal protein L22 77 1e-14
2RK22_ORYSA (P12140) Chloroplast 50S ribosomal protein L22 72 4e-13
3RK22_ORYNI (Q6END4) Chloroplast 50S ribosomal protein L22 72 4e-13
4RK22_SACOF (Q6ENS4) Chloroplast 50S ribosomal protein L22 66 2e-11
5RK22_SACHY (Q6L3F9) Chloroplast 50S ribosomal protein L22 66 2e-11
6RK22_MAIZE (P06589) Chloroplast 50S ribosomal protein L22 66 2e-11

>RK22_WHEAT (Q95H48) Chloroplast 50S ribosomal protein L22|
          Length = 148

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 40/44 (90%), Positives = 40/44 (90%)
 Frame = -1

Query: 134 KYIPRIXXXKSGLRKLAXKVPTDRLLKFERVFKAQKRIPMSVFK 3
           KYIPRI   KSGLRKLA KVPTDRLLKFERVFKAQKRIPMSVFK
Sbjct: 8   KYIPRIKKKKSGLRKLARKVPTDRLLKFERVFKAQKRIPMSVFK 51



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>RK22_ORYSA (P12140) Chloroplast 50S ribosomal protein L22|
          Length = 149

 Score = 72.0 bits (175), Expect = 4e-13
 Identities = 38/44 (86%), Positives = 38/44 (86%)
 Frame = -1

Query: 134 KYIPRIXXXKSGLRKLAXKVPTDRLLKFERVFKAQKRIPMSVFK 3
           KY PRI   KSGLRKLA KVPTDRLLKFERVFKAQKRI MSVFK
Sbjct: 8   KYTPRIKKKKSGLRKLARKVPTDRLLKFERVFKAQKRIHMSVFK 51



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>RK22_ORYNI (Q6END4) Chloroplast 50S ribosomal protein L22|
          Length = 149

 Score = 72.0 bits (175), Expect = 4e-13
 Identities = 38/44 (86%), Positives = 38/44 (86%)
 Frame = -1

Query: 134 KYIPRIXXXKSGLRKLAXKVPTDRLLKFERVFKAQKRIPMSVFK 3
           KY PRI   KSGLRKLA KVPTDRLLKFERVFKAQKRI MSVFK
Sbjct: 8   KYTPRIKKKKSGLRKLARKVPTDRLLKFERVFKAQKRIHMSVFK 51



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>RK22_SACOF (Q6ENS4) Chloroplast 50S ribosomal protein L22|
          Length = 148

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 36/44 (81%), Positives = 36/44 (81%)
 Frame = -1

Query: 134 KYIPRIXXXKSGLRKLAXKVPTDRLLKFERVFKAQKRIPMSVFK 3
           KY PRI     GLRKLA KVPTDRLLKFERVFKAQKRI MSVFK
Sbjct: 8   KYTPRIKKK-KGLRKLARKVPTDRLLKFERVFKAQKRIHMSVFK 50



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>RK22_SACHY (Q6L3F9) Chloroplast 50S ribosomal protein L22|
          Length = 148

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 36/44 (81%), Positives = 36/44 (81%)
 Frame = -1

Query: 134 KYIPRIXXXKSGLRKLAXKVPTDRLLKFERVFKAQKRIPMSVFK 3
           KY PRI     GLRKLA KVPTDRLLKFERVFKAQKRI MSVFK
Sbjct: 8   KYTPRIKKK-KGLRKLARKVPTDRLLKFERVFKAQKRIHMSVFK 50



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>RK22_MAIZE (P06589) Chloroplast 50S ribosomal protein L22|
          Length = 148

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 36/44 (81%), Positives = 36/44 (81%)
 Frame = -1

Query: 134 KYIPRIXXXKSGLRKLAXKVPTDRLLKFERVFKAQKRIPMSVFK 3
           KY PRI     GLRKLA KVPTDRLLKFERVFKAQKRI MSVFK
Sbjct: 8   KYTPRIKKK-KGLRKLARKVPTDRLLKFERVFKAQKRIHMSVFK 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,871,359
Number of Sequences: 219361
Number of extensions: 149714
Number of successful extensions: 242
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 80,573,946
effective HSP length: 26
effective length of database: 74,870,560
effective search space used: 1796893440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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