ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLMN_HUMAN (P00747) Plasminogen precursor (EC 3.4.21.7) [Contain... 30 3.6
2PLMN_MACMU (P12545) Plasminogen precursor (EC 3.4.21.7) [Contain... 30 4.8
3TRPG_CAEEL (Q93971) Transient receptor potential channel (Abnorm... 30 4.8
4GATA6_ARATH (Q6DBP8) GATA transcription factor 6 (AtGATA-6) 30 6.2
5GATA5_ARATH (Q8VZP4) GATA transcription factor 5 (AtGATA-5) 29 8.1

>PLMN_HUMAN (P00747) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin|
           heavy chain A; Activation peptide; Angiostatin; Plasmin
           heavy chain A, short form; Plasmin light chain B]
          Length = 810

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -2

Query: 189 GEVVTRFP*VNLRKDHCRDPDQN-RP-CSRHPILRRW 85
           G + ++FP  NL+K++CR+PD+  RP C      +RW
Sbjct: 218 GYIPSKFPNKNLKKNYCRNPDRELRPWCFTTDPNKRW 254



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>PLMN_MACMU (P12545) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin|
           heavy chain A; Activation peptide; Plasmin heavy chain
           A, short form; Plasmin light chain B]
          Length = 810

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -2

Query: 189 GEVVTRFP*VNLRKDHCRDPD-QNRP-CSRHPILRRW 85
           G + ++FP  NL+K++CR+PD + RP C      +RW
Sbjct: 218 GYIPSKFPNKNLKKNYCRNPDGEPRPWCFTTDPNKRW 254



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>TRPG_CAEEL (Q93971) Transient receptor potential channel (Abnormal gonad|
           development protein 2)
          Length = 2032

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 239 RTAPVAAIRTLHRTIQSVGATGGVYKGQGRSQRELMTRA 355
           RTAP+   R  HR  +S   TGGVY  +G   R L+  A
Sbjct: 124 RTAPIKKTRK-HRRRRSGSFTGGVYPRKGHRNRSLLGHA 161



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>GATA6_ARATH (Q6DBP8) GATA transcription factor 6 (AtGATA-6)|
          Length = 303

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 128 TKTDRARVIQSSDDGIVRRSANSSTASTP--RSGGSGKRT 15
           T+T  + +  S+ DGIVR+  +  T  TP  R G SG +T
Sbjct: 203 TRTVSSTLEASNSDGIVRKCTHCETTKTPQWREGPSGPKT 242



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>GATA5_ARATH (Q8VZP4) GATA transcription factor 5 (AtGATA-5)|
          Length = 308

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 131 LTKTDRARVIQSSDDGIVRRSANSSTASTP--RSGGSGKRT 15
           +T T+ + +  S  DGIVR   +  T +TP  R G SG +T
Sbjct: 200 ITHTESSTLESSKSDGIVRICTHCETITTPQWRQGPSGPKT 240


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,016,835
Number of Sequences: 219361
Number of extensions: 1592198
Number of successful extensions: 3601
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3599
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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