ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2g09 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 86.3 bits (212), Expect(2) = 2e-33 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -1 Query: 333 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 220 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464 Score = 75.1 bits (183), Expect(2) = 2e-33 Identities = 36/36 (100%), Positives = 36/36 (100%) Frame = -2 Query: 488 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 381 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG Sbjct: 392 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 66.6 bits (161), Expect(2) = 6e-24 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = -1 Query: 336 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 220 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476 Score = 63.2 bits (152), Expect(2) = 6e-24 Identities = 29/36 (80%), Positives = 33/36 (91%) Frame = -2 Query: 488 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 381 QEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG Sbjct: 402 QEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 67.8 bits (164), Expect(2) = 5e-23 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = -1 Query: 333 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 220 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474 Score = 58.9 bits (141), Expect(2) = 5e-23 Identities = 27/35 (77%), Positives = 32/35 (91%) Frame = -2 Query: 485 EQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 381 EQ+NVKRVQLA+TY+SQAALGDAN DA+ G+FYG Sbjct: 403 EQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 63.9 bits (154), Expect(2) = 7e-22 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = -1 Query: 333 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 226 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470 Score = 58.9 bits (141), Expect(2) = 7e-22 Identities = 27/36 (75%), Positives = 32/36 (88%) Frame = -2 Query: 488 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 381 QEQ+NVKRVQLAD YMS AALGDAN+DA+ G+F+G Sbjct: 400 QEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 63.9 bits (154), Expect = 2e-10 Identities = 29/36 (80%), Positives = 33/36 (91%) Frame = -2 Query: 488 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 381 QEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG Sbjct: 402 QEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 63.9 bits (154), Expect = 2e-10 Identities = 29/36 (80%), Positives = 34/36 (94%) Frame = -2 Query: 488 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 381 +EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 392 KEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 63.5 bits (153), Expect = 3e-10 Identities = 29/36 (80%), Positives = 33/36 (91%) Frame = -2 Query: 488 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 381 QEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG Sbjct: 389 QEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 59.3 bits (142), Expect = 5e-09 Identities = 26/34 (76%), Positives = 33/34 (97%) Frame = -2 Query: 485 EQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 384 EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+ Sbjct: 399 EQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 58.9 bits (141), Expect = 7e-09 Identities = 27/34 (79%), Positives = 32/34 (94%) Frame = -2 Query: 488 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 387 +EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F Sbjct: 402 EEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 57.8 bits (138), Expect = 2e-08 Identities = 25/35 (71%), Positives = 34/35 (97%) Frame = -2 Query: 488 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 384 QEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 404 QEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 57.8 bits (138), Expect = 2e-08 Identities = 25/35 (71%), Positives = 34/35 (97%) Frame = -2 Query: 488 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 384 QEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 406 QEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 56.2 bits (134), Expect = 5e-08 Identities = 25/34 (73%), Positives = 31/34 (91%) Frame = -2 Query: 488 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 387 QEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F Sbjct: 406 QEQENVKRVQLAETYLKEAALGDANADAINTGNF 439
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 55.8 bits (133), Expect = 6e-08 Identities = 25/35 (71%), Positives = 30/35 (85%) Frame = -2 Query: 488 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 384 QEQ+NVKRVQLAD Y+ +AALGDAN DA+ GSF+ Sbjct: 406 QEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 53.5 bits (127), Expect = 3e-07 Identities = 24/32 (75%), Positives = 29/32 (90%) Frame = -2 Query: 488 QEQDNVKRVQLADTYMSQAALGDANQDAMKTG 393 QEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 401 QEQENVKRVQLAETYLKEAALGDANADAINTG 432
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 32.7 bits (73), Expect = 0.53 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -2 Query: 485 EQDNVKRVQLADTYMSQAAL 426 EQ+NVKRVQLAD Y+S A L Sbjct: 375 EQENVKRVQLADAYLSGAEL 394
>ACSL4_MOUSE (Q9QUJ7) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 4) (LACS 4) (mACS4) Length = 711 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = -1 Query: 141 VNISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLLCCKQN 16 +N+ LN+L+I + P+HLLI +S F+ W L K+N Sbjct: 1 MNLKLNVLTIILL--PVHLLITIYSALIFIPWYFLTNAKKKN 40
>L2GL2_HUMAN (Q6P1M3) Lethal(2) giant larvae protein homolog 2 (HGL)| Length = 1020 Score = 29.6 bits (65), Expect = 4.5 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -1 Query: 105 WQRPIHLLIICHSQYSFLQW 46 WQR LL+ CHS S+ QW Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257
>L2GL2_PONPY (Q5RCX2) Lethal(2) giant larvae protein homolog 2| Length = 1019 Score = 29.6 bits (65), Expect = 4.5 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -1 Query: 105 WQRPIHLLIICHSQYSFLQW 46 WQR LL+ CHS S+ QW Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257
>ACSL4_HUMAN (O60488) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 4) (LACS 4) Length = 711 Score = 29.3 bits (64), Expect = 5.9 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -1 Query: 141 VNISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLLCCKQN 16 + + LN+L+I + P+HLLI +S F+ W L K+N Sbjct: 1 MKLKLNVLTIILL--PVHLLITIYSALIFIPWYFLTNAKKKN 40
>OXYR_MACMU (P56494) Oxytocin receptor (OT-R)| Length = 389 Score = 28.9 bits (63), Expect = 7.7 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = -1 Query: 195 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLL 31 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLAACYGLISFKIWQNLRL 233
>OXYR_HUMAN (P30559) Oxytocin receptor (OT-R)| Length = 389 Score = 28.9 bits (63), Expect = 7.7 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = -1 Query: 195 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLL 31 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLATCYGLISFKIWQNLRL 233
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 28.9 bits (63), Expect = 7.7 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = -1 Query: 393 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 235 F L + N PT S GGG G ++ T P G D N +D DG+ Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80
>OXYR_PIG (P32306) Oxytocin receptor (OT-R)| Length = 386 Score = 28.9 bits (63), Expect = 7.7 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = -1 Query: 195 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLL 31 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLAACYGLISFKIWQNLRL 233
>OXYR_SHEEP (Q28756) Oxytocin receptor (OT-R)| Length = 391 Score = 28.9 bits (63), Expect = 7.7 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = -1 Query: 195 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLL 31 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLAACYGLISFKIWQNLRL 233
>OXYR_BOVIN (P56449) Oxytocin receptor (OT-R)| Length = 391 Score = 28.9 bits (63), Expect = 7.7 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = -1 Query: 195 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLL 31 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLATCYGLISFKIWQNLRL 233 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,164,364 Number of Sequences: 219361 Number of extensions: 1498350 Number of successful extensions: 3863 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3720 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3862 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
