ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 698 0.0
2gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 656 0.0
3gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 563 e-157
4gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 539 e-150
5gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 448 e-123
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 404 e-109
7emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 252 9e-64
8gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 176 4e-41
9dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
10dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
11dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
12dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
13dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 135 2e-28
14gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 133 6e-28
15gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 133 6e-28
16gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 133 6e-28
17dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 133 6e-28
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 6e-28
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 133 6e-28
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 121 2e-24
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 9e-24
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 101 2e-18
24gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca... 80 8e-12
25dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
26dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
27gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox... 74 5e-10
28gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 74 5e-10
29gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 74 5e-10
30gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 70 7e-09
31gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 68 3e-08
32gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 68 3e-08
33gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 68 3e-08
34emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase 54 4e-04
35gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA... 50 0.007
36gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec... 44 0.42
37gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl... 44 0.42
38emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 44 0.42
39gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, co... 42 1.7
40gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 1.7
41gb|AE006293.1| Lactococcus lactis subsp. lactis IL1403 section 5... 42 1.7
42emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in ... 42 1.7
43gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 1.7
44gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, c... 42 1.7
45gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, com... 42 1.7
46dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIK... 42 1.7
47emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 i... 42 1.7
48dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
49gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet... 42 1.7
50emb|Y10657.1|CLRCAGENE C.littorale rca gene 42 1.7
51gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
52emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.7
53gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 1.7
54gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 6.6
55gb|U60105.1| Bos taurus large conductance calcium-activated pota... 40 6.6
56gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx... 40 6.6
57gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 6.6
58ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001... 40 6.6
59gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 6.6
60gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 6.6
61gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 6.6
62gb|AF026000.2| Sus scrofa calcium-activated potassium channel al... 40 6.6
63gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 40 6.6
64gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co... 40 6.6
65ref|NM_174680.2| Bos taurus potassium large conductance calcium-... 40 6.6
66gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.6
67dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 6.6
68gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 6.6
69gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN... 40 6.6
70gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN... 40 6.6
71gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN... 40 6.6
72emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 6.6
73gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com... 40 6.6
74ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ... 40 6.6
75ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 6.6
76gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 6.6
77gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 6.6
78emb|BX571709.23| Zebrafish DNA sequence from clone DKEY-251M8 in... 40 6.6
79gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 6.6 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  698 bits (352), Expect = 0.0
 Identities = 390/396 (98%), Gaps = 5/396 (1%)
 Strand = Plus / Minus

                                                                        
Query: 99   tttgccaaatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaa 157
            |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1709 tttgccaaatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaa 1650

                                                                        
Query: 158  tcgcttggatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgc 216
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1649 tcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgc 1590

                                                                        
Query: 217  ttaaaaggtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttgg 275
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1589 ttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttgg 1530

                                                                        
Query: 276  cattttggtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacct 334
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1529 cattttggtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacct 1470

                                                                        
Query: 335  cctcctatgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaa 393
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1469 cctcctatgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaa 1410

                                                                        
Query: 394  ccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtca 453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 ccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtca 1350

                                                
Query: 454  gcaagctgcacacgcttgacattgtcctgctcctgg 489
            ||||||||||||||||||||||||||||||||||||
Sbjct: 1349 gcaagctgcacacgcttgacattgtcctgctcctgg 1314
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  656 bits (331), Expect = 0.0
 Identities = 334/335 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aattaatactttcttgttctgtttgcaacaaagcagaaggagtctccactgaaggaatga 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7857 aattaatactttcttgttctgtttgcaacaaagcagaaggagtctccactgaaggaatga 7798

                                                                        
Query: 61   atactgagagtgacaaatgataagtaggtgtattggtctttgccaaatgggtatactcaa 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7797 atactgagagtgacaaatgataagtaggtgtattggtctttgccaaatgggtatacacaa 7738

                                                                        
Query: 121  tatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggactt 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7737 tatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggactt 7678

                                                                        
Query: 181  aggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgcc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7677 aggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgcc 7618

                                                                        
Query: 241  gtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7617 gtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 7558

                                               
Query: 301  cacgggcaaagtaccttgctgtgctcctttacctc 335
            |||||||||||||||||||||||||||||||||||
Sbjct: 7557 cacgggcaaagtaccttgctgtgctcctttacctc 7523



 Score =  315 bits (159), Expect = 7e-83
 Identities = 159/159 (100%)
 Strand = Plus / Minus

                                                                        
Query: 331  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 390
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 391  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                                   
Query: 451  tcagcaagctgcacacgcttgacattgtcctgctcctgg 489
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctgg 7197



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 457  agctgcacacgcttgacattgtcctgctcctgg 489
            ||||||||||||||||| || ||||||||||||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctgg 3929
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  563 bits (284), Expect = e-157
 Identities = 392/425 (92%), Gaps = 11/425 (2%)
 Strand = Plus / Minus

                                                                       
Query: 71  tgacaaatgataagtaggtgtattggtctttgccaaatgggtatactcaatatatttaga 130
           |||| ||||||||||||   |||| |||||| |||||| |||||||||||||| ||||  
Sbjct: 803 tgaccaatgataagtagtcctatttgtctttaccaaataggtatactcaatatcttta-- 746

                                                                       
Query: 131 gatatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta---- 185
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
Sbjct: 745 --tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaa 688

                                                                       
Query: 186 -ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcg 244
            | |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcg 629

                                                                       
Query: 245 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 304
           || ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || 
Sbjct: 628 tcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtaca 569

                                                                       
Query: 305 ggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtg 364
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtg 509

                                                                       
Query: 365 tatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcac 424
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 508 tatggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcac 449

                                                                       
Query: 425 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 389

                
Query: 485 cctgg 489
           |||||
Sbjct: 388 cctgg 384
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  539 bits (272), Expect = e-150
 Identities = 343/364 (94%), Gaps = 7/364 (1%)
 Strand = Plus / Minus

                                                                        
Query: 132  atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 185
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 186  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 245
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 246  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 305
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 306  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 365
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 366  atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 425
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                                                                        
Query: 426  cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238

                
Query: 486  ctgg 489
            ||||
Sbjct: 1237 ctgg 1234
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  448 bits (226), Expect = e-123
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                        
Query: 104  caaatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgctt 163
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 caaatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgctt 1335

                                                                        
Query: 164  ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1275

                                                                        
Query: 224  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 1215

                                                              
Query: 284  tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 333
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165



 Score =  216 bits (109), Expect = 5e-53
 Identities = 109/109 (100%)
 Strand = Plus / Minus

                                                                        
Query: 381  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                             
Query: 441  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctgg 489
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctgg 1059
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  404 bits (204), Expect = e-109
 Identities = 317/351 (90%), Gaps = 9/351 (2%)
 Strand = Plus / Minus

                                                                        
Query: 146  catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 199
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 200  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 258
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 259  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 318
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                                        
Query: 319  ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 378
             ||||||||||||||||||||||||||||||||||||||||  ||||||| ||| | |||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgg--gtgtatgaagagtgttc 1356

                                                                        
Query: 379  taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 438
            |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296

                                                               
Query: 439  ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctgg 489
            |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctgg 1245
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>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  252 bits (127), Expect = 9e-64
 Identities = 130/131 (99%)
 Strand = Plus / Minus

                                                                       
Query: 359 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 418
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 419 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189

                      
Query: 479 cctgctcctgg 489
           |||||||||||
Sbjct: 188 cctgctcctgg 178
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  176 bits (89), Expect = 4e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 205  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 264
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 265  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 324
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 325  tcctttacc 333
            |||||||||
Sbjct: 1369 tcctttacc 1361



 Score =  176 bits (89), Expect = 4e-41
 Identities = 104/109 (95%)
 Strand = Plus / Minus

                                                                        
Query: 381  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 440
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                             
Query: 441  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctgg 489
            |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctgg 1255
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 214  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 274  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 330
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 331  acctcctcct 340
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                        
Query: 380  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 439
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                                            
Query: 440  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
            ||| |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcct 1203
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 214  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 274  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 330
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 331  acctcctcct 340
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                        
Query: 380  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 439
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                                            
Query: 440  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
            ||| |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcct 1241
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 214  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 274  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 330
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 331  acctcctcct 340
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                        
Query: 380  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 439
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                                            
Query: 440  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
            ||| |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcct 1240
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 214  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 274  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 330
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 331  acctcctcct 340
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                        
Query: 380  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 439
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                                            
Query: 440  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
            ||| |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcct 1024
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 214  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 274  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 330
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 331  acctcctcct 340
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                        
Query: 380  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 439
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                                            
Query: 440  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
            ||| |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcct 1245
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 214    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 274    ggcattttggtcggtgcaaccttccggcacgggca 308
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 94/111 (84%)
 Strand = Plus / Plus

                                                                          
Query: 377    tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 436
              |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                                 
Query: 437    ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
               ||||| |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctcct 108416



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 232    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 291
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 292    accttccggcacggg 306
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 214   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 274   ggcattttggtcggtgcaaccttccggcacgggca 308
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 94/111 (84%)
 Strand = Plus / Plus

                                                                         
Query: 377   tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 436
             |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                                
Query: 437   ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
              ||||| |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctcct 30293



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 232   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 291
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 292   accttccggcacggg 306
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 214  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 274  ggcattttggtcggtgcaaccttccggcacgggca 308
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                        
Query: 380  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 439
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                                            
Query: 440  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
            ||| |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcct 1209
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 214  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 274  ggcattttggtcggtgcaaccttccggcacgggca 308
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                        
Query: 382  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 441
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                                          
Query: 442  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
            | |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctcct 1204
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 214      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 274      ggcattttggtcggtgcaaccttccggcacgggca 308
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 94/111 (84%)
 Strand = Plus / Plus

                                                                            
Query: 377      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 436
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                                   
Query: 437      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctcct 28303555



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 232      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 291
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 292      accttccggcacggg 306
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 214      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 274      ggcattttggtcggtgcaaccttccggcacgggca 308
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 94/111 (84%)
 Strand = Plus / Plus

                                                                            
Query: 377      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 436
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                                   
Query: 437      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctcct 28286004



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 232      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 291
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 292      accttccggcacggg 306
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 214  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 274  ggcattttggtcggtgcaaccttccggcacgggca 308
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                        
Query: 382  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 441
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                                          
Query: 442  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
            | |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctcct 1239
to top
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 220 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 279
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 280 ttggtcggtgcaaccttccggcacgggca 308
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 9e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 214  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 274  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 330
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 331  acctcctcct 340
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                        
Query: 380  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 439
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                                            
Query: 440  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
            ||| |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcct 1252
to top
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 214 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 274 ggcattttggtcggtgcaaccttccggcacgggca 308
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
to top
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                       
Query: 380 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 439
           ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                                           
Query: 440 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 487
           ||| |||    ||||| ||||||||||||||||| || ||||||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcct 458
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 214     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 274     ggcattttggtcggtgcaaccttccggcacgggca 308
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
to top
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 214   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 273
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 274   ggcattttggtcggtgcaaccttccggcacgggca 308
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
to top
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 386 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 445
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                    
Query: 446 aggtgtcagcaagctgcacacgcttgacattgtcctgctcc 486
           |  ||||||||||||||||||||||||| || |||||||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctcc 819
to top
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                        
Query: 386  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 445
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                     
Query: 446  aggtgtcagcaagctgcacacgcttgacattgtcctgctcc 486
            |  ||||||||||||||||||||||||| || |||||||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctcc 1214
to top
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                        
Query: 386  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 445
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                     
Query: 446  aggtgtcagcaagctgcacacgcttgacattgtcctgctcc 486
            |  ||||||||||||||||||||||||| || |||||||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctcc 1214
to top
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 92/111 (82%)
 Strand = Plus / Minus

                                                                        
Query: 378  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 437
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948

                                                               
Query: 438  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctg 488
            ||||| |||  |||| || |||||||| | ||| || || |||||||||||
Sbjct: 947  gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctg 897



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 224  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 283
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 284  tcggtgcaaccttc 297
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 224  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 283
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 284  tcggtgcaaccttc 297
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
to top
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 224  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 283
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 284  tcggtgcaaccttc 297
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
to top
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 224  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 283
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 284  tcggtgcaaccttc 297
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                        
Query: 385  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 444
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                        
Query: 445  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctg 488
            ||  |||| || |||||||| | ||| || || |||||||||||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctg 1091
to top
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                       
Query: 403 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 462
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                      
Query: 463 acacgcttgacattgtcctgctcctgg 489
           || | ||| ||||||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcctgg 32
to top
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 457  agctgcacacgcttgacattgtcctgctcctgg 489
            ||||||||||||||||| || ||||||||||||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctgg 1360
to top
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 406  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 455
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
to top
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 419   catcacccagagctgcctggct 440
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254
to top
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 119   aatatatttagagatatattaa 140
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963
to top
>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence
          Length = 178257

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 76     aatgataagtaggtgtattgg 96
              |||||||||||||||||||||
Sbjct: 109370 aatgataagtaggtgtattgg 109390
to top
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 121   tatatttagagatatattaac 141
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335
to top
>gb|AE006293.1| Lactococcus lactis subsp. lactis IL1403 section 55 of 218 of the
            complete genome
          Length = 10029

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 3    ttaatactttcttgttctgtt 23
            |||||||||||||||||||||
Sbjct: 5007 ttaatactttcttgttctgtt 4987
to top
>emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in linkage group 14,
              complete sequence
          Length = 189425

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      tactttcttgttctgtttgca 27
              |||||||||||||||||||||
Sbjct: 142947 tactttcttgttctgtttgca 142967
to top
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   tatatttagagatatattaac 141
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367
to top
>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence
          Length = 217738

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 76     aatgataagtaggtgtattgg 96
              |||||||||||||||||||||
Sbjct: 149522 aatgataagtaggtgtattgg 149502
to top
>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence
          Length = 168084

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 76     aatgataagtaggtgtattgg 96
              |||||||||||||||||||||
Sbjct: 131097 aatgataagtaggtgtattgg 131077
to top
>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530024M06 product:Hypothetical
            protein FLJ33092 (UST1r) homolog [Homo sapiens], full
            insert sequence
          Length = 2605

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 76   aatgataagtaggtgtattgg 96
            |||||||||||||||||||||
Sbjct: 2351 aatgataagtaggtgtattgg 2331
to top
>emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 in linkage group 8,
              complete sequence
          Length = 168607

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      tactttcttgttctgtttgca 27
              |||||||||||||||||||||
Sbjct: 109335 tactttcttgttctgtttgca 109355
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 190     aaacatcagatattaaaagtg 210
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
to top
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 341   atgcagcaagagatggtgggt 361
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550
to top
>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 457  agctgcacacgcttgacattgtcctgctc 485
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 190     aaacatcagatattaaaagtg 210
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
to top
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 190    aaacatcagatattaaaagtg 210
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
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>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 121  tatatttagagatatattaac 141
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197
to top
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   cctttacctcctcctatgca 345
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378
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>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 419  catcacccagagctgcctggctca 442
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565
to top
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 326  cctttacctcctcctatgca 345
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656
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>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   cctttacctcctcctatgca 345
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964
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>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 450 gtcagcaagctgcacacgct 469
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    tcagatattaaaagtggcat 214
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    tcagatattaaaagtggcat 214
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   tcagatattaaaagtggcat 214
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
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>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 419  catcacccagagctgcctggctca 442
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
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>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   aatatatttagagatatatt 138
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473
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>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 469    ttgacattgtcctgctcctg 488
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419
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>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 419  catcacccagagctgcctggctca 442
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
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>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 223  ggtgtaaaggcagctgccgtcgtcgctc 250
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 143   aaacatgcccagcaatcgcttgga 166
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
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>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   cctttacctcctcctatgca 345
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681
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>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 419  catcacccagagctgcctggctca 442
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659
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>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 419  catcacccagagctgcctggctca 442
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026
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>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 419  catcacccagagctgcctggctca 442
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   tggcatgcttaaaaggtgta 228
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
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>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 469    ttgacattgtcctgctcctg 488
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979
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>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 419  catcacccagagctgcctggctca 442
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
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>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 315 cttgctgtgctcctttacctcctc 338
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625
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>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   cctttacctcctcctatgca 345
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736
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>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   aatatatttagagatatatt 138
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485
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>emb|BX571709.23| Zebrafish DNA sequence from clone DKEY-251M8 in linkage group 11,
             complete sequence
          Length = 154382

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 58    tgaatactgagagtgacaaatgat 81
             ||||||||||||||| ||||||||
Sbjct: 41193 tgaatactgagagtgtcaaatgat 41216
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 194    atcagatattaaaagtggcatgct 217
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,541,283
Number of Sequences: 3902068
Number of extensions: 4541283
Number of successful extensions: 91013
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90699
Number of HSP's gapped (non-prelim): 265
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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