>gb|AY104121.1| Zea mays PCO141133 mRNA sequence
          Length = 815

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 258 ccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagcaaca 317
           ||||||||||||||  |||||||||| ||||  |||||||| ||||| || |||||||||
Sbjct: 506 ccgtgaatcttgatgttctctttcttcgcaatcccagcctgaactaggaaagtagcaaca 447

                                  
Query: 318 ttcttacgctgatcaccttggag 340
           ||||| ||||| |||||||||||
Sbjct: 446 ttcttgcgctggtcaccttggag 424

>ref|NM_190883.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 360

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 87/101 (86%), Gaps = 1/101 (0%)
 Strand = Plus / Minus

                                                                       
Query: 244 gtgttgcctaaaatccgtgaatcttgatactctctttctttgcaagtccag-cctgcact 302
           |||| |||||||| ||||| || ||||| |||||||||||| ||| ||||| |||| |||
Sbjct: 356 gtgtagcctaaaacccgtgtattttgatgctctctttctttacaattccagccctgaact 297

                                                    
Query: 303 agaaatgtagcaacattcttacgctgatcaccttggagttg 343
           || || || |||||||| ||||||||||||||||| |||||
Sbjct: 296 aggaacgtcgcaacatttttacgctgatcaccttgaagttg 256

>gb|AY108531.1| Zea mays PCO112988 mRNA sequence
          Length = 792

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                       
Query: 251 ctaaaatccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgt 310
           ||||||||||||||||||||| || ||||| ||  | | ||| ||||| |||||||| ||
Sbjct: 520 ctaaaatccgtgaatcttgatgctatcttttttcacgattccggcctggactagaaaagt 461

                                            
Query: 311 agcaacattcttacgctgatcaccttggagttg 343
           ||| ||||| ||||||||||||||||| |||||
Sbjct: 460 agcgacatttttacgctgatcaccttgcagttg 428

>ref|XM_475493.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 348

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                       
Query: 258 ccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagcaaca 317
           ||||||||||||||  | || ||||| ||||  |||||||| ||||| || || ||||||
Sbjct: 341 ccgtgaatcttgatgttgtccttcttagcaatcccagcctgaactaggaacgtggcaaca 282

                               
Query: 318 ttcttacgctgatcaccttg 337
           ||||||||||||||||||||
Sbjct: 281 ttcttacgctgatcaccttg 262

>dbj|AK070301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049M22, full
            insert sequence
          Length = 1410

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                        
Query: 258  ccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagcaaca 317
            ||||||||||||||  | || ||||| ||||  |||||||| ||||| || || ||||||
Sbjct: 1178 ccgtgaatcttgatgttgtccttcttagcaatcccagcctgaactaggaacgtggcaaca 1119

                                
Query: 318  ttcttacgctgatcaccttg 337
            ||||||||||||||||||||
Sbjct: 1118 ttcttacgctgatcaccttg 1099

>dbj|AK058219.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F05, full
           insert sequence
          Length = 731

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                       
Query: 258 ccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagcaaca 317
           ||||||||||||||  | || ||||| ||||  |||||||| ||||| || || ||||||
Sbjct: 499 ccgtgaatcttgatgttgtccttcttagcaatcccagcctgaactaggaacgtggcaaca 440

                               
Query: 318 ttcttacgctgatcaccttg 337
           ||||||||||||||||||||
Sbjct: 439 ttcttacgctgatcaccttg 420

>gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0010D04,
             complete sequence
          Length = 122599

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 295   cctgcactagaaatgtagcaacattcttacgctgatcaccttg 337
             |||| ||||| || || ||||||||||||||||||||||||||
Sbjct: 80087 cctgaactaggaacgtggcaacattcttacgctgatcaccttg 80045

>emb|AJ519839.1|CAR519839 Coffea arabica mRNA for SUI1 protein
          Length = 678

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 49/54 (90%), Gaps = 3/54 (5%)
 Strand = Plus / Minus

                                                                 
Query: 314 aacattcttacgctgatcaccttggagttgggatgacctgggccctagttctgg 367
           |||||||||||||||||| |||||||||| | |||||||||  |||||||||||
Sbjct: 413 aacattcttacgctgatccccttggagtt-gaatgacctgg--cctagttctgg 363

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                           
Query: 295      cctgcactagaaatgtagcaacattcttacgctgatcaccttg 337
                |||| ||||| || || ||||||||||||||||||||||||||
Sbjct: 24394297 cctgaactaggaacgtggcaacattcttacgctgatcaccttg 24394255

>emb|AJ519840.1|CAR519840 Coffea arabica sui1 gene, exons 1-5
          Length = 2677

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 314  aacattcttacgctgatcaccttggagttg 343
            |||||||||||||||||| |||||||||||
Sbjct: 2246 aacattcttacgctgatccccttggagttg 2217

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                      
Query: 244      gtgttgcctaaaatccgtgaatcttgatactctctttctttgcaagtccagcct 297
                |||| |||||||| ||||| || ||||| |||||||||||| ||| ||||||||
Sbjct: 33644640 gtgtagcctaaaacccgtgtattttgatgctctctttctttacaattccagcct 33644693



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 295      cctgcactagaaatgtagcaacattcttacgctgatcaccttggagttg 343
                |||| ||||| || || |||||||| ||||||||||||||||| |||||
Sbjct: 33644768 cctgaactaggaacgtcgcaacatttttacgctgatcaccttgaagttg 33644816

>dbj|AP003290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0684C02
          Length = 80086

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 244   gtgttgcctaaaatccgtgaatcttgatactctctttctttgcaagtccagcct 297
             |||| |||||||| ||||| || ||||| |||||||||||| ||| ||||||||
Sbjct: 59512 gtgtagcctaaaacccgtgtattttgatgctctctttctttacaattccagcct 59565



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 295   cctgcactagaaatgtagcaacattcttacgctgatcaccttggagttg 343
             |||| ||||| || || |||||||| ||||||||||||||||| |||||
Sbjct: 59640 cctgaactaggaacgtcgcaacatttttacgctgatcaccttgaagttg 59688

>gb|U82696.2| Homo sapiens chromosome X clone ICRFXc104-F064, ICRFXc104-G0799,
             Qc-14E2, Qc-13D8, Qc-7G11, ICRFXc104-E0681, Qc-11C8,
             Qc-9A9 map q28, complete sequence
          Length = 161664

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 11    tacacaacaacctggataaacc 32
             ||||||||||||||||||||||
Sbjct: 78344 tacacaacaacctggataaacc 78323

>gb|AF274855.3| Homo sapiens chromosome X clone RP11-366F6 map q28, complete sequence
          Length = 200395

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 11     tacacaacaacctggataaacc 32
              ||||||||||||||||||||||
Sbjct: 134498 tacacaacaacctggataaacc 134477

>gb|AY617076.1| Bassia scoparia putative translation initiation factor mRNA,
           partial cds
          Length = 207

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 312 gcaacattcttacgctgatcaccttggagttgg 344
           ||||| |||||||||||||| ||||| ||||||
Sbjct: 146 gcaaccttcttacgctgatcgccttgcagttgg 114

>gb|AC150773.2| Xenopus tropicalis clone CH216-69F7, complete sequence
          Length = 115925

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 266   cttgatactctctttctttgcaagt 290
             |||||| ||||||||||||||||||
Sbjct: 74553 cttgattctctctttctttgcaagt 74577

>gb|AC123865.5| Mus musculus BAC clone RP23-365C14 from chromosome 10, complete sequence
          Length = 212994

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 86     cacaccgatgccaaattcaaatgt 109
              ||||| ||||||||||||||||||
Sbjct: 116478 cacactgatgccaaattcaaatgt 116501

>gb|AC124722.3| Mus musculus BAC clone RP23-389E7 from chromosome 6, complete sequence
          Length = 193830

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    tccgtgaatcttgatactct 276
              ||||||||||||||||||||
Sbjct: 107099 tccgtgaatcttgatactct 107118

>gb|AC097512.2| Homo sapiens BAC clone RP11-412P11 from 4, complete sequence
          Length = 149282

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  atttgagtgttgcctaaaat 257
            ||||||||||||||||||||
Sbjct: 6346 atttgagtgttgcctaaaat 6327

>gb|AC090648.5| Genomic sequence for Mus musculus, clone RP23-331I23, complete sequence
          Length = 198695

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   tccgtgaatcttgatactct 276
             ||||||||||||||||||||
Sbjct: 87691 tccgtgaatcttgatactct 87672

>emb|BX248080.21| Zebrafish DNA sequence from clone CH211-226C1 in linkage group 5,
              complete sequence
          Length = 188075

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     acaacttgcatcaacacacc 91
              ||||||||||||||||||||
Sbjct: 127788 acaacttgcatcaacacacc 127769

>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 243     agtgttgcctaaaatccgtg 262
               ||||||||||||||||||||
Sbjct: 1712792 agtgttgcctaaaatccgtg 1712773


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,281,004
Number of Sequences: 3902068
Number of extensions: 3281004
Number of successful extensions: 54934
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54858
Number of HSP's gapped (non-prelim): 75
length of query: 367
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 345
effective length of database: 17,147,199,772
effective search space: 5915783921340
effective search space used: 5915783921340
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)