ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2f23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain L... 33 1.6
2VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B) 32 2.7
3VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A) 31 5.9
4ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disinteg... 30 7.7

>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)|
          Length = 367

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 116 SSCGKHT*QTNLLKEGKGTEFHGALF*ERHRQSCCYCKLLVFYSHAFAVIASKTYTRAY 292
           S CG+H   T+ ++  KG  +H A F      +C  CK  +     FA++  K   R +
Sbjct: 158 SRCGRHIHSTDWVRRAKGNVYHLACF------ACFSCKRQLSTGEEFALVEEKVLCRVH 210



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>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)|
          Length = 588

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -3

Query: 652 EQRLRATTKCQHH-----KVPARKKQCVDECHRREHHHPSRAACERK 527
           +Q  R   +CQ H     + P RK+QCV EC  R   +P R   E +
Sbjct: 118 QQSQRQFQECQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEE 164



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>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)|
          Length = 605

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 628 KCQ-HHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKE 494
           +CQ   + P RK+QCV EC  +    P +   E K   WR+   +E
Sbjct: 128 RCQWQEQRPERKQQCVKECREQYQEDPWKGERENK---WREEEEEE 170



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>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 19) (Meltrin beta)
           (Metalloprotease and disintegrin dentritic antigen
           marker) (MADDAM)
          Length = 956

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +3

Query: 159 KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRSVYTR 314
           +E E SS+ LS+ RGI      +S  S+++ PLP    + +   IYRS + +
Sbjct: 121 RETELSSVTLSTCRGIRGLITVSSNLSYVIEPLPDSKGQHL---IYRSEHLK 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,051,979
Number of Sequences: 219361
Number of extensions: 1782037
Number of successful extensions: 4514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4510
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 9951802875
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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