ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2f21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GP157_MOUSE (Q8C206) Probable G-protein coupled receptor 157 32 1.8
2GP157_RAT (Q5FVG1) Probable G-protein coupled receptor 157 30 5.3
3Y1153_METTH (O27221) Hypothetical protein MTH1153 30 5.3
4MASS1_BRARE (Q6JAN0) Monogenic audiogenic seizure susceptibility... 30 6.9
5NPT2B_RAT (Q9JJ09) Sodium-dependent phosphate transport protein ... 29 9.0
6DNMT2_MOUSE (O55055) DNA (cytosine-5)-methyltransferase-like pro... 29 9.0

>GP157_MOUSE (Q8C206) Probable G-protein coupled receptor 157|
          Length = 330

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 224 PVLLFLWENFVVVMSCAVERAN---LLHVRSLWPVGWRRRARQLL 99
           P  L  WE  VV++SCA+       L+   +LWP   R RAR+LL
Sbjct: 7   PTELLPWERAVVLLSCALSALGSGLLVATHALWP-DLRSRARRLL 50



to top

>GP157_RAT (Q5FVG1) Probable G-protein coupled receptor 157|
          Length = 330

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 224 PVLLFLWENFVVVMSC---AVERANLLHVRSLWPVGWRRRARQLL 99
           P  L  WE  VV++SC   A+    L+   +LWP   R RAR+LL
Sbjct: 7   PTELLPWERAVVLLSCVLSALGSGLLVATHALWP-DLRSRARRLL 50



to top

>Y1153_METTH (O27221) Hypothetical protein MTH1153|
          Length = 529

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 154 SRFARSTAQDMTTTKFSHRKRSTGYLHALVIYGVVCSTETGSNTTK 291
           SRF   T +D  T  F+ +   +GY     +Y +V S E G+ TTK
Sbjct: 52  SRFI--TIEDTKTAPFTKKTVGSGYSMRPDVYYIVASVELGNTTTK 95



to top

>MASS1_BRARE (Q6JAN0) Monogenic audiogenic seizure susceptibility protein 1|
            homolog precursor (Very large G-protein coupled receptor
            1)
          Length = 6199

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 141  SVACRVEKTCPAVARTCGDWNREAGPLLPFSSHCLYAKFYFS 16
            SV   VE+T PA+     DW  E GPL+P +        +FS
Sbjct: 2705 SVTLLVERTAPAIGNVAVDWRIE-GPLVPTTFADTSGTLFFS 2745



to top

>NPT2B_RAT (Q9JJ09) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34 me
          Length = 695

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 417 CCRDCAEVCGWMCCGLQRGRRGMELPRK 334
           CCR C  VCG  CC   +  + +E   K
Sbjct: 625 CCRVCCMVCGCKCCRCSKCCKNLEEEEK 652



to top

>DNMT2_MOUSE (O55055) DNA (cytosine-5)-methyltransferase-like protein 2 (Dnmt2)|
           (DNA methyltransferase homolog MmuIIP) (DNA MTase
           homolog MmuIIP) (M.MmuIIP) (Met-2)
          Length = 415

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 457 QPFTVTVELQPQKSRGGVSLCNKSWAMKSQGRDT 558
           Q + V  E QP+  R G  +C +S + +S G+DT
Sbjct: 195 QKYAVVEESQPRVQRTGPRICAESSSTQSSGKDT 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,925,342
Number of Sequences: 219361
Number of extensions: 1689764
Number of successful extensions: 4620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4619
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top