ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2f21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474688.1| Oryza sativa (japonica cultivar-group), predic... 82 2e-12
2dbj|AK071690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
4emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4,... 74 6e-10
5ref|XM_477275.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
6dbj|AK101732.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
7gb|AY109721.1| Zea mays CL37125_1 mRNA sequence 60 9e-06
8ref|NM_194498.1| Oryza sativa (japonica cultivar-group) hypothet... 58 3e-05
9gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
10gb|AC099400.2| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
11dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
13dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
14dbj|AP004344.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
15gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
16gb|AC099344.4| Homo sapiens BAC clone RP11-427E2 from 2, complet... 46 0.13
17emb|AL391356.22| Human DNA sequence from clone RP11-100A13 on ch... 44 0.52
18gb|CP000097.1| Synechococcus sp. CC9902, complete genome 42 2.1
19gb|AC122936.3| Mus musculus BAC clone RP23-20H6 from 5, complete... 42 2.1
20gb|BC114080.1| Bos taurus nuclear factor I/C (CCAAT-binding tran... 42 2.1
21ref|NM_001024574.1| Bos taurus nuclear factor I/C (CCAAT-binding... 42 2.1
22gb|DQ004950.1| Bos taurus NF1-C2 transcription factor mRNA, comp... 42 2.1
23gb|AC161507.2| Mus musculus chromosome 5, clone RP23-76L18, comp... 42 2.1
24ref|XM_414860.1| PREDICTED: Gallus gallus similar to p120E4F (LO... 40 8.1
25gb|AY318146.2| Mus musculus olfactory receptor Olfr956-ps1 pseud... 40 8.1
26gb|AY123349.1| Physocephala sagittaria 16S ribosomal RNA gene, p... 40 8.1
27emb|CR954189.2| Medicago truncatula chromosome 5 clone mte1-73d1... 40 8.1
28emb|AL354807.6| Human DNA sequence from clone RP11-522F22 on chr... 40 8.1
29gb|AC055713.29| Homo sapiens 12 BAC RP11-486O12 (Roswell Park Ca... 40 8.1
30emb|AL731688.14| Mouse DNA sequence from clone RP23-291K6 on chr... 40 8.1
31gb|AF456853.1| Gasterophilus sp. LRC-2002 16S ribosomal RNA gene... 40 8.1
32gb|AC117435.4| Homo sapiens 3 BAC RP11-71I3 (Roswell Park Cancer... 40 8.1
33gb|AC108937.4| Homo sapiens BAC clone RP11-679I19 from 4, comple... 40 8.1
34gb|AY074122.1| Mus musculus olfactory receptor MOR171-40P pseudo... 40 8.1
35gb|AF322438.1| Hypoderma diana 16S ribosomal RNA gene, partial s... 40 8.1
36gb|AC022334.66| Homo sapiens 12 BAC RP11-365O10 (Roswell Park Ca... 40 8.1
37gb|AF304727.1|AF304727 Sphyracephala munroi 16S ribosomal RNA ge... 40 8.1
38emb|BX935602.2| Gallus gallus finished cDNA, clone ChEST78e5 40 8.1
39ref|NG_001881.1| Mus musculus olfactory receptor 956, pseudogene... 40 8.1
40gb|AC092340.5| Homo sapiens chromosome 16 clone RP11-24M10, comp... 40 8.1
41gb|AC019044.6| Homo sapiens BAC clone RP11-12F4 from 2, complete... 40 8.1
42emb|BX678774.7| Mouse DNA sequence from clone RP23-193A4 on chro... 40 8.1
43dbj|AK129223.1| Mus musculus mRNA for mKIAA0814 protein 40 8.1
44emb|Z95559.1|CEY41E3 Caenorhabditis elegans YAC Y41E3, complete ... 40 8.1
45gb|AC073434.42| Mus musculus strain C57BL/6J chromosome 9 clone ... 40 8.1
46emb|AL671999.6| Mouse DNA sequence from clone RP23-149D11 on chr... 40 8.1
47gb|AC161259.2| Mus musculus BAC clone RP23-465D18 from chromosom... 40 8.1 
>ref|XM_474688.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1218

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 508  gtttccttgtgcaataagtcatgggcaatgaagtcccaaggaagagatactgacatcaga 567
            |||||||||||||  | |||||| |||||| |||||||||||||||||||||||||||  
Sbjct: 1199 gtttccttgtgcagcaggtcatgtgcaatgtagtcccaaggaagagatactgacatcaag 1140

                                         
Query: 568  caacacttgagcggaagaagcttatcatc 596
            ||||| || || || ||||||| ||||||
Sbjct: 1139 caacattttagaggcagaagctcatcatc 1111
to top
>dbj|AK071690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114H04, full
            insert sequence
          Length = 1741

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 508  gtttccttgtgcaataagtcatgggcaatgaagtcccaaggaagagatactgacatcaga 567
            |||||||||||||  | |||||| |||||| |||||||||||||||||||||||||||  
Sbjct: 1334 gtttccttgtgcagcaggtcatgtgcaatgtagtcccaaggaagagatactgacatcaag 1275

                                         
Query: 568  caacacttgagcggaagaagcttatcatc 596
            ||||| || || || ||||||| ||||||
Sbjct: 1274 caacattttagaggcagaagctcatcatc 1246
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 73/85 (85%)
 Strand = Plus / Plus

                                                                           
Query: 512     ccttgtgcaataagtcatgggcaatgaagtcccaaggaagagatactgacatcagacaac 571
               |||||||||  | |||||| |||||| |||||||||||||||||||||||||||  ||||
Sbjct: 5622674 ccttgtgcagcaggtcatgtgcaatgtagtcccaaggaagagatactgacatcaagcaac 5622733

                                        
Query: 572     acttgagcggaagaagcttatcatc 596
               | || || || ||||||| ||||||
Sbjct: 5622734 attttagaggcagaagctcatcatc 5622758
to top
>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01,
             complete sequence
          Length = 162227

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 73/85 (85%)
 Strand = Plus / Plus

                                                                         
Query: 512   ccttgtgcaataagtcatgggcaatgaagtcccaaggaagagatactgacatcagacaac 571
             |||||||||  | |||||| |||||| |||||||||||||||||||||||||||  ||||
Sbjct: 79881 ccttgtgcagcaggtcatgtgcaatgtagtcccaaggaagagatactgacatcaagcaac 79940

                                      
Query: 572   acttgagcggaagaagcttatcatc 596
             | || || || ||||||| ||||||
Sbjct: 79941 attttagaggcagaagctcatcatc 79965
to top
>ref|XM_477275.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1463

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                        
Query: 495  gtccagaggtggcgtttccttgtgcaataagtcatgggcaatgaagtcccaaggaagaga 554
            |||||| || || ||||||||||| |  | |||||| |||||| ||||||||||||||||
Sbjct: 1351 gtccagcggaggggtttccttgtgtagcaggtcatgtgcaatgtagtcccaaggaagaga 1292

                       
Query: 555  tactgacatca 565
            ||| |||||||
Sbjct: 1291 taccgacatca 1281
to top
>dbj|AK101732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061G11, full
            insert sequence
          Length = 1613

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                        
Query: 495  gtccagaggtggcgtttccttgtgcaataagtcatgggcaatgaagtcccaaggaagaga 554
            |||||| || || ||||||||||| |  | |||||| |||||| ||||||||||||||||
Sbjct: 1351 gtccagcggaggggtttccttgtgtagcaggtcatgtgcaatgtagtcccaaggaagaga 1292

                       
Query: 555  tactgacatca 565
            ||| |||||||
Sbjct: 1291 taccgacatca 1281
to top
>gb|AY109721.1| Zea mays CL37125_1 mRNA sequence
          Length = 714

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                       
Query: 511 tccttgtgcaataagtcatgggcaatgaagtcccaaggaagagatactgacatcagacaa 570
           ||||||||||| |  || ||||||||| |||||||||||||||| || |||||||  |||
Sbjct: 267 tccttgtgcaaaagatcgtgggcaatgtagtcccaaggaagagacacagacatcaagcaa 326

                                     
Query: 571 cacttgagcggaagaagcttatcatc 596
           ||||| || || | ||||| ||||||
Sbjct: 327 cacttcagaggcacaagctcatcatc 352
to top
>ref|NM_194498.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0096E22.9), mRNA
          Length = 1110

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 525  gtcatgggcaatgaagtcccaaggaagagatactgacatca 565
            |||||| |||||| ||||||||||||||||||| |||||||
Sbjct: 1071 gtcatgtgcaatgtagtcccaaggaagagataccgacatca 1031
to top
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 525    gtcatgggcaatgaagtcccaaggaagagatactgacatca 565
              |||||| |||||| ||||||||||||||||||| |||||||
Sbjct: 212844 gtcatgtgcaatgtagtcccaaggaagagataccgacatca 212804
to top
>gb|AC099400.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0096E22, complete sequence
          Length = 133846

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 525   gtcatgggcaatgaagtcccaaggaagagatactgacatca 565
             |||||| |||||| ||||||||||||||||||| |||||||
Sbjct: 62507 gtcatgtgcaatgtagtcccaaggaagagataccgacatca 62467
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 525    gtcatgggcaatgaagtcccaaggaagagatactgacatca 565
              |||||| |||||| ||||||||||||||||||| |||||||
Sbjct: 212844 gtcatgtgcaatgtagtcccaaggaagagataccgacatca 212804
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                        
Query: 525     gtcatgggcaatgaagtcccaaggaagagatactgacatca 565
               |||||| |||||| ||||||||||||||||||| |||||||
Sbjct: 8297740 gtcatgtgcaatgtagtcccaaggaagagataccgacatca 8297780
to top
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0021G06
          Length = 137678

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 525  gtcatgggcaatgaagtcccaaggaagagatactgacatca 565
            |||||| |||||| ||||||||||||||||||| |||||||
Sbjct: 2838 gtcatgtgcaatgtagtcccaaggaagagataccgacatca 2878
to top
>dbj|AP004344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0639B07
          Length = 138780

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 525   gtcatgggcaatgaagtcccaaggaagagatactgacatca 565
             |||||| |||||| ||||||||||||||||||| |||||||
Sbjct: 92852 gtcatgtgcaatgtagtcccaaggaagagataccgacatca 92892
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 525    gtcatgggcaatgaagtcccaaggaagagatactgacatca 565
              |||||| |||||| ||||||||||||||||||| |||||||
Sbjct: 212842 gtcatgtgcaatgtagtcccaaggaagagataccgacatca 212802
to top
>gb|AC099344.4| Homo sapiens BAC clone RP11-427E2 from 2, complete sequence
          Length = 135598

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 67    gccagcttccctgttccagtcac 89
             |||||||||||||||||||||||
Sbjct: 42602 gccagcttccctgttccagtcac 42624
to top
>emb|AL391356.22| Human DNA sequence from clone RP11-100A13 on chromosome 10 Contains a
             neurofilament 3 (NEF3) pseudogene and part of a novel
             gene, complete sequence
          Length = 65377

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 225   atatttacatgccctagtcatc 246
             ||||||||||||||||||||||
Sbjct: 60209 atatttacatgccctagtcatc 60188
to top
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 464   tcacggtcacggtggaactgc 484
             |||||||||||||||||||||
Sbjct: 22460 tcacggtcacggtggaactgc 22480
to top
>gb|AC122936.3| Mus musculus BAC clone RP23-20H6 from 5, complete sequence
          Length = 234064

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    ttttactgaaaaataaaattt 30
             |||||||||||||||||||||
Sbjct: 82279 ttttactgaaaaataaaattt 82259
to top
>gb|BC114080.1| Bos taurus nuclear factor I/C (CCAAT-binding transcription factor),
           mRNA (cDNA clone MGC:137374 IMAGE:8175599), complete cds
          Length = 1632

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 76  cctgttccagtcaccacaggt 96
           |||||||||||||||||||||
Sbjct: 804 cctgttccagtcaccacaggt 784
to top
>ref|NM_001024574.1| Bos taurus nuclear factor I/C (CCAAT-binding transcription factor)
           (NFIC), mRNA
          Length = 1485

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 76  cctgttccagtcaccacaggt 96
           |||||||||||||||||||||
Sbjct: 731 cctgttccagtcaccacaggt 711
to top
>gb|DQ004950.1| Bos taurus NF1-C2 transcription factor mRNA, complete cds
          Length = 1485

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 76  cctgttccagtcaccacaggt 96
           |||||||||||||||||||||
Sbjct: 731 cctgttccagtcaccacaggt 711
to top
>gb|AC161507.2| Mus musculus chromosome 5, clone RP23-76L18, complete sequence
          Length = 262831

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    ttttactgaaaaataaaattt 30
             |||||||||||||||||||||
Sbjct: 40453 ttttactgaaaaataaaattt 40473
to top
>ref|XM_414860.1| PREDICTED: Gallus gallus similar to p120E4F (LOC416560), mRNA
          Length = 3031

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 cctcgtcttcctcgctgaag 372
           ||||||||||||||||||||
Sbjct: 115 cctcgtcttcctcgctgaag 96
to top
>gb|AY318146.2| Mus musculus olfactory receptor Olfr956-ps1 pseudogene, complete
           sequence
          Length = 760

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 29  ttagcataaagacagtgtgagcta 52
           |||||| |||||||||||||||||
Sbjct: 416 ttagcacaaagacagtgtgagcta 393
to top
>gb|AY123349.1| Physocephala sagittaria 16S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 1194

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 10  ttttactgaaaaataaaatt 29
           ||||||||||||||||||||
Sbjct: 874 ttttactgaaaaataaaatt 855
to top
>emb|CR954189.2| Medicago truncatula chromosome 5 clone mte1-73d17, COMPLETE SEQUENCE
          Length = 110556

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     gttttactgaaaaataaaatttag 32
             |||||| |||||||||||||||||
Sbjct: 80914 gttttattgaaaaataaaatttag 80937
to top
>emb|AL354807.6| Human DNA sequence from clone RP11-522F22 on chromosome 13 Contains a
             DnaJ (Hsp40) homolog, subfamily A, member 1 (DNAJA1)
             pseudogene, complete sequence
          Length = 157135

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    aaaataaaatttagcataaagaca 42
             |||||||||||||| |||||||||
Sbjct: 95334 aaaataaaatttagtataaagaca 95357
to top
>gb|AC055713.29| Homo sapiens 12 BAC RP11-486O12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 118312

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     cttccctgttccagtcacca 91
              ||||||||||||||||||||
Sbjct: 106062 cttccctgttccagtcacca 106043
to top
>emb|AL731688.14| Mouse DNA sequence from clone RP23-291K6 on chromosome 11 Contains the
             3' end of the Slit3 gene for slit homolog 3 (Drosophila),
             complete sequence
          Length = 113164

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   ttgcatgcgtaggaattcca 452
             ||||||||||||||||||||
Sbjct: 63984 ttgcatgcgtaggaattcca 64003
to top
>gb|AF456853.1| Gasterophilus sp. LRC-2002 16S ribosomal RNA gene, partial
           sequence; mitochondrial gene for mitochondrial product
          Length = 480

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 10  ttttactgaaaaataaaatt 29
           ||||||||||||||||||||
Sbjct: 201 ttttactgaaaaataaaatt 182
to top
>gb|AC117435.4| Homo sapiens 3 BAC RP11-71I3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 56270

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    aataaaatttagcataaaga 40
             ||||||||||||||||||||
Sbjct: 26271 aataaaatttagcataaaga 26252
to top
>gb|AC108937.4| Homo sapiens BAC clone RP11-679I19 from 4, complete sequence
          Length = 105033

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 63    aagggccagcttccctgttccagtcacc 90
             |||||||| ||||||| |||||||||||
Sbjct: 25224 aagggccaccttccctcttccagtcacc 25251
to top
>gb|AY074122.1| Mus musculus olfactory receptor MOR171-40P pseudogene, partial
           sequence
          Length = 829

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 29  ttagcataaagacagtgtgagcta 52
           |||||| |||||||||||||||||
Sbjct: 449 ttagcacaaagacagtgtgagcta 426
to top
>gb|AF322438.1| Hypoderma diana 16S ribosomal RNA gene, partial sequence
          Length = 551

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 10  ttttactgaaaaataaaatt 29
           ||||||||||||||||||||
Sbjct: 199 ttttactgaaaaataaaatt 180
to top
>gb|AC022334.66| Homo sapiens 12 BAC RP11-365O10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 122025

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    ttttactgaaaaataaaatt 29
             ||||||||||||||||||||
Sbjct: 49151 ttttactgaaaaataaaatt 49132
to top
>gb|AF304727.1|AF304727 Sphyracephala munroi 16S ribosomal RNA gene, partial sequence;
          mitochondrial gene for mitochondrial product
          Length = 474

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 10 ttttactgaaaaataaaatt 29
          ||||||||||||||||||||
Sbjct: 31 ttttactgaaaaataaaatt 12
to top
>emb|BX935602.2| Gallus gallus finished cDNA, clone ChEST78e5
          Length = 3275

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 cctcgtcttcctcgctgaag 372
           ||||||||||||||||||||
Sbjct: 350 cctcgtcttcctcgctgaag 331
to top
>ref|NG_001881.1| Mus musculus olfactory receptor 956, pseudogene 1 (Olfr956-ps1) on
           chromosome 9
          Length = 829

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 29  ttagcataaagacagtgtgagcta 52
           |||||| |||||||||||||||||
Sbjct: 449 ttagcacaaagacagtgtgagcta 426
to top
>gb|AC092340.5| Homo sapiens chromosome 16 clone RP11-24M10, complete sequence
          Length = 146524

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    tttactgaaaaataaaattt 30
             ||||||||||||||||||||
Sbjct: 83379 tttactgaaaaataaaattt 83398
to top
>gb|AC019044.6| Homo sapiens BAC clone RP11-12F4 from 2, complete sequence
          Length = 126497

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     ttttactgaaaaataaaatt 29
              ||||||||||||||||||||
Sbjct: 106887 ttttactgaaaaataaaatt 106906
to top
>emb|BX678774.7| Mouse DNA sequence from clone RP23-193A4 on chromosome 2, complete
             sequence
          Length = 123748

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ttactgaaaaataaaattta 31
             ||||||||||||||||||||
Sbjct: 45556 ttactgaaaaataaaattta 45575
to top
>dbj|AK129223.1| Mus musculus mRNA for mKIAA0814 protein
          Length = 977

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 433 ttgcatgcgtaggaattcca 452
           ||||||||||||||||||||
Sbjct: 213 ttgcatgcgtaggaattcca 232
to top
>emb|Z95559.1|CEY41E3 Caenorhabditis elegans YAC Y41E3, complete sequence
          Length = 150641

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     gttttactgaaaaataaaat 28
             ||||||||||||||||||||
Sbjct: 97242 gttttactgaaaaataaaat 97223
to top
>gb|AC073434.42| Mus musculus strain C57BL/6J chromosome 9 clone rp23-159l13, complete
             sequence
          Length = 184073

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 29    ttagcataaagacagtgtgagcta 52
             |||||| |||||||||||||||||
Sbjct: 44621 ttagcacaaagacagtgtgagcta 44644
to top
>emb|AL671999.6| Mouse DNA sequence from clone RP23-149D11 on chromosome 4, complete
              sequence
          Length = 206657

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     ttttactgaaaaataaaatt 29
              ||||||||||||||||||||
Sbjct: 130339 ttttactgaaaaataaaatt 130320
to top
>gb|AC161259.2| Mus musculus BAC clone RP23-465D18 from chromosome 9, complete
            sequence
          Length = 175659

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 29   ttagcataaagacagtgtgagcta 52
            |||||| |||||||||||||||||
Sbjct: 6398 ttagcacaaagacagtgtgagcta 6375


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,519,886
Number of Sequences: 3902068
Number of extensions: 5519886
Number of successful extensions: 106363
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106159
Number of HSP's gapped (non-prelim): 204
length of query: 596
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 573
effective length of database: 17,143,297,704
effective search space: 9823109584392
effective search space used: 9823109584392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top