ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2f03 |
|---|---|
| Clone Library Name | barley_pub |
>CBX6_HUMAN (O95503) Chromobox protein homolog 6| Length = 412 Score = 38.9 bits (89), Expect = 0.010 Identities = 25/69 (36%), Positives = 32/69 (46%) Frame = +2 Query: 251 VHFHLKPSSRFLHSKIASSCCVHHSHFNHRLSLICFFLRRRQQPIPSPLAGSDDCSPSVR 430 VHF +KPS+ K+ SS VH + R C + RR P P P GS P + Sbjct: 95 VHFSVKPSASASSPKLHSSAAVHRLKKDIRR---CHRMSRRPLPRPDPQGGSPGLRPPIS 151 Query: 431 TSSASVRSI 457 S +VR I Sbjct: 152 PFSETVRII 160
>CBX6_MOUSE (Q9DBY5) Chromobox protein homolog 6| Length = 414 Score = 38.9 bits (89), Expect = 0.010 Identities = 25/69 (36%), Positives = 32/69 (46%) Frame = +2 Query: 251 VHFHLKPSSRFLHSKIASSCCVHHSHFNHRLSLICFFLRRRQQPIPSPLAGSDDCSPSVR 430 VHF +KPS+ K+ SS VH + R C + RR P P P GS P + Sbjct: 95 VHFSVKPSASASSPKLHSSAAVHRLKKDIRR---CHRMSRRPLPRPDPQGGSPGLRPPIS 151 Query: 431 TSSASVRSI 457 S +VR I Sbjct: 152 PFSETVRII 160
>NAPSA_MOUSE (O09043) Napsin-A precursor (EC 3.4.23.-) (Kidney-derived aspartic| protease-like protein) (KDAP-1) (KAP) Length = 419 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +2 Query: 20 LGCLPWIHGPISC*CAKTHSPIHKIRPLTPPVHFHLGGTKYHNFTSQ 160 +G P+++G C+KT P PPV FHLGG + N T Q Sbjct: 298 IGGYPFLNGQYFIQCSKT--------PTLPPVSFHLGGV-WFNLTGQ 335
>DYR1A_RAT (Q63470) Dual specificity tyrosine-phosphorylation-regulated kinase| 1A (EC 2.7.12.2) (Protein kinase minibrain homolog) (MNBH) (RP86) (Dual specificity YAK1-related kinase) Length = 763 Score = 31.6 bits (70), Expect = 1.7 Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 6/111 (5%) Frame = +2 Query: 200 SKTHSPIHKPVE*LTPPVH---FHLKPSSRFLHSKIASSCCVHHSHFNHRLSLICFFLRR 370 S T +P VE T PV FH+ P LH +S HH H +H L Sbjct: 569 SGTEAPTQVTVE--THPVQETTFHVAPQQNALHHHHGNSSHHHHHHHHHHHHHGQQALGN 626 Query: 371 RQQP--IPSPL-AGSDDCSPSVRTSSASVRSIEMSFLGLSSDDDGLGRQPN 514 R +P SP + S S V S S+ S+ S S+ G Q N Sbjct: 627 RTRPRVYNSPTNSSSTQDSMEVGHSHHSMTSLSSSTTSSSTSSSSTGNQGN 677
>DYR1A_MOUSE (Q61214) Dual specificity tyrosine-phosphorylation-regulated kinase| 1A (EC 2.7.12.1) (Protein kinase minibrain homolog) (MNBH) (MP86) (Dual specificity YAK1-related kinase) Length = 763 Score = 31.6 bits (70), Expect = 1.7 Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 6/111 (5%) Frame = +2 Query: 200 SKTHSPIHKPVE*LTPPVH---FHLKPSSRFLHSKIASSCCVHHSHFNHRLSLICFFLRR 370 S T +P VE T PV FH+ P LH +S HH H +H L Sbjct: 569 SGTEAPTQVTVE--THPVQETTFHVAPQQNALHHHHGNSSHHHHHHHHHHHHHGQQALGN 626 Query: 371 RQQP--IPSPL-AGSDDCSPSVRTSSASVRSIEMSFLGLSSDDDGLGRQPN 514 R +P SP + S S V S S+ S+ S S+ G Q N Sbjct: 627 RTRPRVYNSPTNSSSTQDSMEVGHSHHSMTSLSSSTTSSSTSSSSTGNQGN 677
>DYR1A_HUMAN (Q13627) Dual specificity tyrosine-phosphorylation-regulated kinase| 1A (EC 2.7.12.1) (Protein kinase minibrain homolog) (MNBH) (HP86) (Dual specificity YAK1-related kinase) Length = 763 Score = 31.6 bits (70), Expect = 1.7 Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 6/111 (5%) Frame = +2 Query: 200 SKTHSPIHKPVE*LTPPVH---FHLKPSSRFLHSKIASSCCVHHSHFNHRLSLICFFLRR 370 S T +P VE T PV FH+ P LH +S HH H +H L Sbjct: 569 SGTEAPTQVTVE--THPVQETTFHVAPQQNALHHHHGNSSHHHHHHHHHHHHHGQQALGN 626 Query: 371 RQQP--IPSPL-AGSDDCSPSVRTSSASVRSIEMSFLGLSSDDDGLGRQPN 514 R +P SP + S S V S S+ S+ S S+ G Q N Sbjct: 627 RTRPRVYNSPTNSSSTQDSMEVGHSHHSMTSLSSSTTSSSTSSSSTGNQGN 677
>CAD89_DROME (Q9VEU1) Cadherin 89D precursor| Length = 2240 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/78 (26%), Positives = 29/78 (37%) Frame = +2 Query: 104 TPPVHFHLGGTKYHNFTSQLCSQQNSQASCVHSKTHSPIHKPVE*LTPPVHFHLKPSSRF 283 T P F GG+K N T LC + H+K H + +P + LK Sbjct: 2095 TSPDSFQHGGSKRGNNTEVLCPR--------HAKAHLELRQPNTDSSDTYEDSLKTDEPL 2146 Query: 284 LHSKIASSCCVHHSHFNH 337 + S+ C H H H Sbjct: 2147 VAHNCRSANCEHRQHQQH 2164
>MGA_HUMAN (O43451) Maltase-glucoamylase, intestinal [Includes: Maltase (EC| 3.2.1.20) (Alpha-glucosidase); Glucoamylase (EC 3.2.1.3) (Glucan 1,4-alpha-glucosidase)] Length = 1856 Score = 29.6 bits (65), Expect = 6.4 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = -3 Query: 425 PKVNNHLSQQEVMGLVVAVDEE 360 P +N HLS+Q+ MG +A+D+E Sbjct: 1721 PALNTHLSRQKFMGFKIALDDE 1742
>NOC3_YEAST (Q07896) Nucleolar complex-associated protein 3| Length = 663 Score = 29.3 bits (64), Expect = 8.3 Identities = 31/143 (21%), Positives = 55/143 (38%) Frame = +2 Query: 68 KTHSPIHKIRPLTPPVHFHLGGTKYHNFTSQLCSQQNSQASCVHSKTHSPIHKPVE*LTP 247 K+ P ++IRPLT K + ++ +N + + V++ + TP Sbjct: 186 KSIIPGYRIRPLTET-------EKKEKVSKEVSKLRNFEQALVYNYKNYVGRLQSLSKTP 238 Query: 248 PVHFHLKPSSRFLHSKIASSCCVHHSHFNHRLSLICFFLRRRQQPIPSPLAGSDDCSPSV 427 ++ S L ++ A SHFN R + LRR C P + Sbjct: 239 SNAAPIQVSLGILATQAAKELISTASHFNFRTDIFTLLLRR-------------ICKPRI 285 Query: 428 RTSSASVRSIEMSFLGLSSDDDG 496 T S++ I+ L+ D++G Sbjct: 286 STDPTSIQIIQTFETLLNEDEEG 308
>FBLN1_CAEEL (O77469) Fibulin-1 precursor| Length = 728 Score = 29.3 bits (64), Expect = 8.3 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%) Frame = -3 Query: 293 CCVGTLTRVLNENV-----QVGSTIQRACEWGCEFCCEHNWLVNFAVNTTGL*SCDTSCP 129 CC G N N G+++ C+ CC + L N + T + + SCP Sbjct: 23 CCAGGTRHFKNSNTCSSIKSEGTSM--TCQRAASICCLRSLLDNACDSGTDIAKEEESCP 80 Query: 128 LNENVQVGSTVEFC 87 N N+ G + C Sbjct: 81 SNINILGGGLKKEC 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,517,204 Number of Sequences: 219361 Number of extensions: 1779285 Number of successful extensions: 4544 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4368 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4534 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
