>gb|AE013095.1| Thermoanaerobacter tengcongensis MB4, section 122 of 244 of the
            complete genome
          Length = 12242

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 517  cagtgtttgttttctgatata 537
            |||||||||||||||||||||
Sbjct: 4324 cagtgtttgttttctgatata 4304

>ref|NM_008069.3| Mus musculus gamma-aminobutyric acid (GABA-A) receptor, subunit beta
            1 (Gabrb1), mRNA
          Length = 1860

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  ctgtacattttcatttaaaa 268
            ||||||||||||||||||||
Sbjct: 1785 ctgtacattttcatttaaaa 1766

>gb|AC099629.6| Mus musculus chromosome 15, clone RP24-86K17, complete sequence
          Length = 175809

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 170    cagcaaaattcacaagccagttgt 193
              |||||||| |||||||||||||||
Sbjct: 121861 cagcaaaaatcacaagccagttgt 121884

>gb|AC084780.10| Mus musculus chromosome 5, clone RP23-212N20, complete sequence
          Length = 234357

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   ctgtacattttcatttaaaa 268
             ||||||||||||||||||||
Sbjct: 90631 ctgtacattttcatttaaaa 90612

>ref|XM_426585.1| PREDICTED: Gallus gallus similar to fidgetin (LOC429028), mRNA
          Length = 2571

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  ttgatatgcttctttcttcg 366
            ||||||||||||||||||||
Sbjct: 2051 ttgatatgcttctttcttcg 2070

>gb|AC145740.4| Mus musculus BAC clone RP24-233K8 from chromosome 12, complete sequence
          Length = 178285

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   tgtgttcacagcaaaactca 210
             ||||||||||||||||||||
Sbjct: 30075 tgtgttcacagcaaaactca 30056

>gb|AC115037.16| Mus musculus chromosome 12, clone RP24-276C17, complete sequence
          Length = 214848

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   tgtgttcacagcaaaactca 210
             ||||||||||||||||||||
Sbjct: 78311 tgtgttcacagcaaaactca 78330

>gb|AC005997.3| Homo sapiens PAC clone RP4-558L10 from 7, complete sequence
          Length = 143250

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   tgagtagtgatgatgatggc 496
             ||||||||||||||||||||
Sbjct: 86238 tgagtagtgatgatgatggc 86257

>ref|XM_981366.1| PREDICTED: Mus musculus RIKEN cDNA B230208N19 gene, transcript
            variant 1 (B230208N19Rik), mRNA
          Length = 5497

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  ctgtacattttcatttaaaa 268
            ||||||||||||||||||||
Sbjct: 1971 ctgtacattttcatttaaaa 1952

>ref|XM_981401.1| PREDICTED: Mus musculus RIKEN cDNA B230208N19 gene, transcript
            variant 2 (B230208N19Rik), mRNA
          Length = 5374

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  ctgtacattttcatttaaaa 268
            ||||||||||||||||||||
Sbjct: 1848 ctgtacattttcatttaaaa 1829

>gb|AC141425.3| Mus musculus BAC clone RP23-283P2 from chromosome 14, complete sequence
          Length = 174986

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   tacattttcatttaaaaccc 271
             ||||||||||||||||||||
Sbjct: 59109 tacattttcatttaaaaccc 59128

>ref|XM_752043.1| Ustilago maydis 521 hypothetical protein (UM00989.1) partial mRNA
          Length = 2064

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 373 gcaacaaccaatcccatcac 392
           ||||||||||||||||||||
Sbjct: 107 gcaacaaccaatcccatcac 126

>gb|AC122915.2| Mus musculus BAC clone RP23-27G7 from 5, complete sequence
          Length = 220145

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    ctgtacattttcatttaaaa 268
              ||||||||||||||||||||
Sbjct: 138732 ctgtacattttcatttaaaa 138713

>gb|AC120540.6| Mus musculus chromosome 12, clone RP23-460P20, complete sequence
          Length = 172662

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     ggttgtctcccttggatacatgga 46
              |||||||||| |||||||||||||
Sbjct: 109363 ggttgtctcctttggatacatgga 109386

>gb|AC142349.1| Pan troglodytes BAC clone RP43-9F6 from 7, complete sequence
          Length = 192143

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 477    tgagtagtgatgatgatggc 496
              ||||||||||||||||||||
Sbjct: 183251 tgagtagtgatgatgatggc 183270

>gb|AC175696.2| Otolemur garnetti, clone XX-8122D2, complete sequence
          Length = 43820

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   tcacagcaaaattcacaagc 186
             ||||||||||||||||||||
Sbjct: 14201 tcacagcaaaattcacaagc 14220

>emb|CR762496.7| Zebrafish DNA sequence from clone DKEY-212J2 in linkage group 21,
            complete sequence
          Length = 239780

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 513  actgcagtgtttgttttctg 532
            ||||||||||||||||||||
Sbjct: 8368 actgcagtgtttgttttctg 8349

>emb|BX677666.17| Zebrafish DNA sequence from clone DKEY-58B18 in linkage group 2,
             complete sequence
          Length = 198342

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   tgtacattttcatttagggg 131
             ||||||||||||||||||||
Sbjct: 98969 tgtacattttcatttagggg 98950

>dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, contains hoxBa, evx
             homologue on hoxBa
          Length = 235883

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   tgtacattttcatttaaaac 269
             ||||||||||||||||||||
Sbjct: 39899 tgtacattttcatttaaaac 39918

>gb|AY106196.1| Zea mays PCO069684 mRNA sequence
          Length = 1206

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 483 gtgatgatgatggccttggg 502
           ||||||||||||||||||||
Sbjct: 201 gtgatgatgatggccttggg 220

>dbj|AB097558.1| Macaca fascicularis brain cDNA clone:QmoA-15590, full insert
           sequence
          Length = 1979

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 346 cttgatatgcttctttcttc 365
           ||||||||||||||||||||
Sbjct: 555 cttgatatgcttctttcttc 574

>gb|AC122871.4| Mus musculus BAC clone RP23-107P12 from 5, complete sequence
          Length = 213939

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    tttcatttagggggcacgaa 138
              ||||||||||||||||||||
Sbjct: 176149 tttcatttagggggcacgaa 176168

>emb|CT030249.7| Mouse DNA sequence from clone RP23-285E19 on chromosome 12, complete
            sequence
          Length = 179748

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 23   ggttgtctcccttggatacatgga 46
            |||||||||| |||||||||||||
Sbjct: 5745 ggttgtctcctttggatacatgga 5722

>gb|AC155172.4| Mus musculus BAC clone RP23-36N9 from chromosome 14, complete sequence
          Length = 255753

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   tacattttcatttaaaaccc 271
             ||||||||||||||||||||
Sbjct: 97487 tacattttcatttaaaaccc 97468

>gb|U14418.1|MMU14418 Mus musculus GABA-benzodiazepine receptor beta-1 subunit mRNA,
            complete cds
          Length = 2228

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  ctgtacattttcatttaaaa 268
            ||||||||||||||||||||
Sbjct: 2117 ctgtacattttcatttaaaa 2098

>emb|X55273.1|MMGABAB1 Mouse mRNA for GABA(A) receptor beta-1 subunit
          Length = 2228

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  ctgtacattttcatttaaaa 268
            ||||||||||||||||||||
Sbjct: 2117 ctgtacattttcatttaaaa 2098

>emb|AL683897.5| Mouse DNA sequence from clone RP23-208E23 on chromosome 2, complete
              sequence
          Length = 187308

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    ctgtacattttcatttaaaa 268
              ||||||||||||||||||||
Sbjct: 131685 ctgtacattttcatttaaaa 131704


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,712,976
Number of Sequences: 3902068
Number of extensions: 5712976
Number of successful extensions: 113235
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113170
Number of HSP's gapped (non-prelim): 65
length of query: 574
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 551
effective length of database: 17,143,297,704
effective search space: 9445957034904
effective search space used: 9445957034904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)