ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FA11_MOUSE (Q91Y47) Coagulation factor XI precursor (EC 3.4.21.2... 32 0.28
2TUSA_PSEU2 (Q4ZVE8) Sulfurtransferase tusA homolog (EC 2.8.1.-) 31 0.62
3NALP2_HUMAN (Q9NX02) NACHT-, LRR- and PYD-containing protein 2 (... 30 1.1
4CDYL2_HUMAN (Q8N8U2) Chromodomain Y-like protein 2 (CDY-like 2) 30 1.4
5COX15_YEAST (P40086) Cytochrome c oxidase assembly protein COX15 28 4.0
6ODO1_RALEU (Q59106) 2-oxoglutarate dehydrogenase E1 component (E... 28 5.3

>FA11_MOUSE (Q91Y47) Coagulation factor XI precursor (EC 3.4.21.27) (Plasma|
           thromboplastin antecedent) (PTA) (FXI) [Contains:
           Coagulation factor XIa heavy chain; Coagulation factor
           XIa light chain]
          Length = 624

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
 Frame = +3

Query: 147 CR--CYHHPTCSILSIAAVHRPHEYALPCHHLRLCWAPDSMTIHLNXXXXXXXXXXXXXS 320
           CR  C HHPTC   +  +   P E      HL L    +S    L              S
Sbjct: 226 CRRICTHHPTCLFFTFFSQAWPKESQ---RHLCLLKTSES---GLPSTRITKIHALSGFS 279

Query: 321 IGHCRHTNPPPCH 359
           + HCRH+ P  CH
Sbjct: 280 LQHCRHSVPVFCH 292



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>TUSA_PSEU2 (Q4ZVE8) Sulfurtransferase tusA homolog (EC 2.8.1.-)|
          Length = 84

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 22/58 (37%), Positives = 28/58 (48%)
 Frame = -3

Query: 281 DIEVDCHGVWCPAEPQMMTWKRIFMRSMHSGDR*YTAGGVMITSATFWSTRPSISTIC 108
           D E+D  G++CP EP MM         +H   R   AGG++   AT  STR  I   C
Sbjct: 11  DAELDAVGLFCP-EPVMM---------LHQKVRDLPAGGLLKVIATDPSTRRDIPKFC 58



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>NALP2_HUMAN (Q9NX02) NACHT-, LRR- and PYD-containing protein 2 (PYRIN domain-|
           and NACHT domain-containing protein 1) (PYRIN-containing
           APAF1-like protein 2) (Nucleotide-binding site protein
           1)
          Length = 1062

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = +3

Query: 66  VCLIILSVKT-TFYTTNGGDRGTS*PKRCRCYHHPTCSILSIAAVHRPHEYALPCHHLRL 242
           +CL +   KT T+ T  G D+    P  C    HP C++  +  V         C     
Sbjct: 747 LCLALRGHKTVTYLTLQGNDQDDMFPALCEVLRHPECNLRYLGLV--------SCSATTQ 798

Query: 243 CWAPDSMTIHLN 278
            WA  S+ + +N
Sbjct: 799 QWADLSLALEVN 810



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>CDYL2_HUMAN (Q8N8U2) Chromodomain Y-like protein 2 (CDY-like 2)|
          Length = 506

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 228 DMEAHIHEVDAQRRSIIYCRWGDDNIGNVLVNSSLDLHHLSCRKLFLQKE 79
           D+  H+ E D     + +    ++ +G+ L N  L+LH    RKL  +K+
Sbjct: 180 DLNDHVGEQDMGECDVDHATLAENGLGSALTNGGLNLHSPVKRKLEAEKD 229



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>COX15_YEAST (P40086) Cytochrome c oxidase assembly protein COX15|
          Length = 486

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +2

Query: 32  QLGSKWPTNWLGMLNYSFCKNNFLHDKWWRSRDELTKTLPMLSSPHLQYIIDRRC 196
           ++G +W  +   +++ +FC+     D WWR+         +L +P    ++ R C
Sbjct: 326 KMGERWFPSSRELMDENFCRREDKKDLWWRN---------LLENPVTVQLVHRTC 371



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>ODO1_RALEU (Q59106) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
           (Alpha-ketoglutarate dehydrogenase)
          Length = 950

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +2

Query: 2   TYVSDPKM-LTQLGSKWPTNWLGMLNYSFCK-NNFLHDKWWRSRDELTKTLPMLSSPHLQ 175
           TY     M L +L +     + G + + F   ++    +WW+ R E T++ P+ +    +
Sbjct: 146 TYFGKESMSLRELLNNLRETYCGTIGFEFMYVSDQAQKRWWQERLETTRSKPVFTLEKKK 205

Query: 176 YIIDR 190
           +I+DR
Sbjct: 206 HILDR 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,610,437
Number of Sequences: 219361
Number of extensions: 1015433
Number of successful extensions: 2449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2446
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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