ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1p22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KCNH2_MOUSE (O35219) Potassium voltage-gated channel subfamily H... 32 1.6
2ATG26_DEBHA (Q6BN88) Sterol 3-beta-glucosyltransferase (EC 2.4.1... 30 6.0
3WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7... 30 6.0

>KCNH2_MOUSE (O35219) Potassium voltage-gated channel subfamily H member 2|
           (Voltage-gated potassium channel subunit Kv11.1)
           (Ether-a-go-go related gene potassium channel 1) (ERG1)
           (MERG) (Merg1) (Ether-a-go-go related protein 1)
           (Eag-related protein 1)
          Length = 1162

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -2

Query: 356 SSNWASSVGAT-----LPLLLRPKCRQNGARQGTLHGRGGPPTTMNMCDLTP 216
           S++W +S  A      LP LL    R++  R G++H  G P   +   DLTP
Sbjct: 151 STSWLASGRAKTFRLKLPALLALTARESSVRTGSMHSAGAPGAVVVDVDLTP 202



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>ATG26_DEBHA (Q6BN88) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1574

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 342 LFRGRHSSAAPPTQVPTKWSSPRHTSWTRRTTHDDEHV 229
           +FR RH+S      +  K++S + ++W R  TH DE +
Sbjct: 595 IFRNRHNS------ISKKYTSEKGSNWNRPFTHKDEEI 626



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>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 319  GRVAPTEEAQLELQSCLTVQVPAYPIEGED*PPKPVAQVQFDGGRPP 459
            G+ AP   A +   S  T Q+P+ P+ G   PP+P + ++ DG  PP
Sbjct: 1531 GQPAPLLPAAVGAVSLATSQLPSPPL-GPTVPPQPPSALESDGEGPP 1576


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,637,836
Number of Sequences: 219361
Number of extensions: 1737479
Number of successful extensions: 4286
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4285
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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