>DFD_DROME (P07548) Homeotic protein deformed|
          Length = 586

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = +2

Query: 299 HSVFPIDLFRHPQQYHHTPHRQ*HGHQQFQPGR--TLATGMHHQLIQRGPSSCY 454
           HS+ P D+      +HH PH   H H    P      A   HHQ    G SS Y
Sbjct: 78  HSMHPADMVSDYMAHHHNPHSHSHSHTHSLPHHHSNSAISGHHQASAGGYSSNY 131

>PSIP1_FELCA (Q66T72) PC4 and SFRS1-interacting protein (Lens epithelium-derived|
           growth factor) (Transcription coactivator p75)
           (LEDGF/p75)
          Length = 530

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -1

Query: 615 KPQGEKRYNLRRTTGCKCHSSSPSTGEEESCE---ERKKADGRNYR**HGRNL 466
           K +G+K    +R    K   +S S  EEE  +   E+K+  GRN++  H RN+
Sbjct: 250 KKEGKKEVESKRKNSAKTGVTSTSDSEEEGDDQESEKKRKGGRNFQTAHRRNM 302

>PSIP1_CHICK (Q5XXA9) Lens epithelium-derived growth factor|
          Length = 579

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -1

Query: 615 KPQGEKRYNLRRTTGCKCHSSSPSTGEEESCEE---RKKADGRNYR**HGRNL 466
           K  G+K    +R    K  S+S S  E+E  EE   +KK  GR+++  H RN+
Sbjct: 297 KKDGKKEAEPKRKNAAKLGSASASDSEDEGGEEEGDKKKKGGRSFQSTHRRNI 349

>M12_STRPY (P19401) M protein, serotype 12 precursor (Fragment)|
          Length = 564

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 24/85 (28%), Positives = 42/85 (49%)
 Frame = -2

Query: 614 NHKVKNATI*DALQVANATAAAPPREKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGP 435
           N K + A + +  Q+ +A+     R+ + AVR+ KKQ VE      E  +K +++ R G 
Sbjct: 321 NLKAELAKVTEQKQILDASRKGTARDLE-AVRKSKKQQVEAALKQLEEQNKISEASRKGL 379

Query: 434 SESADGASQLQEFSQAETVDAHATA 360
               D + + ++  Q E   A+ TA
Sbjct: 380 RRDLDTSREAKK--QVEKDLANLTA 402

>CBF1_KLULA (P49379) Centromere-binding protein 1 (CBP-1) (Centromere-binding|
           factor 1) (Centromere promoter factor 1)
          Length = 359

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = -2

Query: 539 EKKKAVRRGKKQTVETTAD--DTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDAHA 366
           ++ +A RR  K+ +E T +  D+E  +K  +S  +  +  ADG+   ++ SQ    D   
Sbjct: 159 DEDQAQRRRGKKNIEGTGESNDSERATKIGESGSSNETAGADGSGDREDGSQP---DGTE 215

Query: 365 TAGEEYGDIVVDGETNRLGKRYG 297
              EE G     G   R G++ G
Sbjct: 216 HDDEENGGAGAGGAAPRRGRKPG 238

>DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)|
          Length = 614

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -2

Query: 542 REKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDA 372
           +EKK    +  K++ E+T +++   SKA  +  T P+ S +GA     + QA+ + A
Sbjct: 98  KEKKDKKEKKAKKSDESTTEESTSASKATTNGTTTPAASTNGA---YTYKQADALSA 151

>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)|
          Length = 1206

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 329 HPQQYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGPSS 448
           H   +HH  H Q H HQQ Q  +T  +  H  L   G S+
Sbjct: 306 HHHHHHHHHHHQHHNHQQQQQQQTSLSQGHASLTVAGGSA 345

>PSIP1_BOVIN (Q8MJG1) PC4 and SFRS1-interacting protein (Lens epithelium-derived|
           growth factor) (Fragment)
          Length = 483

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -1

Query: 615 KPQGEKRYNLRRTTGCKCHSSSPSTGEEESCE---ERKKADGRNYR**HGRNL 466
           K +G+K    +R    K   +S S  EEE  +   E+K+  GRN++  H RN+
Sbjct: 203 KKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRKGGRNFQTAHRRNM 255

>RPA8_SCHPO (Q9P7P1) DNA-directed RNA polymerase I 17 kDa polypeptide (EC|
           2.7.7.6) (A14) (Nucleolar protein ker1)
          Length = 147

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 584 DALQVANATAAAPPREKKKAVRRGKKQTVETTADDTEGTSKAADS 450
           D L +   T     +EKKKA RR K++  +  AD T+G  +   S
Sbjct: 103 DDLHLDKETKKRLKKEKKKAARREKEEARKAKADTTQGVGEKEQS 147

>PSIP1_HUMAN (O75475) PC4 and SFRS1-interacting protein (Lens epithelium-derived|
           growth factor) (Transcriptional coactivator p75/p52)
           (Dense fine speckles 70 kDa protein) (DFS 70)
           (CLL-associated antigen KW-7)
          Length = 530

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -1

Query: 615 KPQGEKRYNLRRTTGCKCHSSSPSTGEEESCE---ERKKADGRNYR**HGRNL 466
           K +G+K    +R    K   +S S  EEE  +   E+K+  GRN++  H RN+
Sbjct: 250 KKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRKGGRNFQTAHRRNM 302

>ARP8_SCHPO (Q9US07) Probable actin-related protein 8|
          Length = 620

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 515 GKKQTVETTADDTEGTSKAADSKRTGPSESADG--ASQLQEFSQAETVDAH 369
           G+K   ET ++   G +K  DSK++   E  DG   S+L E    +T+  H
Sbjct: 9   GEKDAKETESESANGDTKQDDSKKSQVEEEEDGIEESELGEEKDNKTIVLH 59

>PVDA_PLAKN (P22545) Duffy receptor alpha form precursor (Erythrocyte-binding|
           protein)
          Length = 1073

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
 Frame = -2

Query: 581 ALQVANATAAAPPREK---KKAVRRGKKQTVET-TADDTEGT----SKAADSKRTGPSES 426
           AL         PP E    + AV     +T  T T ++ EGT    +   D K  GP+ S
Sbjct: 590 ALSAGQGHDKVPPAEAAATESAVLHSADKTPNTVTEENKEGTQMDGAAGGDGKAPGPTVS 649

Query: 425 ADGASQLQEFSQAETVDAHATAGE 354
           +D  S   + S   T  +HA AGE
Sbjct: 650 SDVPSVGGKDSGPSTSASHALAGE 673

>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic|
            cytomatrix protein) (Brain-derived HLMN protein)
          Length = 5038

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 23/80 (28%), Positives = 31/80 (38%)
 Frame = -2

Query: 554  AAPPREKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFSQAETVD 375
            A  PR  KK V  G +   E TAD T  + +    K    S   D   Q  E+       
Sbjct: 3330 ADDPRNLKKIVDSGVQTDDEETADRTYASRRRRTKKSVDTSVQTDDEDQ-DEWDMPSRSR 3388

Query: 374  AHATAGEEYGDIVVDGETNR 315
              A  G +YGD   +G+  +
Sbjct: 3389 RKARTG-KYGDSTAEGDKTK 3407

>MEOX2_HUMAN (P50222) Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth|
           arrest-specific homeobox)
          Length = 304

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +2

Query: 269 SSSCYVV--KKDHSVFPIDLFRHPQQYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGP 442
           SSSC +     +  +F     +H + +HH  H   H H Q Q  + L T  H   +   P
Sbjct: 45  SSSCIIAGYPNEEGMFAS---QHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPP 101

Query: 443 SSCYQQL 463
           S+    L
Sbjct: 102 SAARHSL 108

>FIBP_ADE07 (P15141) Fiber protein (pIV)|
          Length = 343

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 260 NYYSSSCYVVKKDHSVFPIDL 322
           NY   +CY    DH+ FPID+
Sbjct: 271 NYIYGTCYYTASDHTAFPIDI 291

>GRPA_RAT (P08568) Submandibular gland secretory Glx-rich protein CA|
           precursor (GRP-CA)
          Length = 246

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 25/92 (27%), Positives = 38/92 (41%)
 Frame = -2

Query: 626 PVDANHKVKNATI*DALQVANATAAAPPREKKKAVRRGKKQTVETTADDTEGTSKAADSK 447
           PVD+     +A   DA  V    +AAP  E+  A    +++  +      E     A S 
Sbjct: 39  PVDSGSDPPSADA-DAENVQEGESAAPANEEPPATSGSEEEQQQQEPTQAENQEPPATS- 96

Query: 446 RTGPSESADGASQLQEFSQAETVDAHATAGEE 351
                  ++   Q QE +QAE  +  AT+G E
Sbjct: 97  ------GSEEEQQQQEPTQAENQEPPATSGSE 122

>DEC13_DROME (P18171) Defective chorion-1 protein, FC177 isoform precursor|
          Length = 1590

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = -2

Query: 614  NHKVKNATI*DALQVANATAAAPPREKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGP 435
            NHK       D +++  +TA+      + A   G   T E T    E T+  + S  T  
Sbjct: 1143 NHK-------DFVRLTTSTASPITSTTEAATPTGSDSTSEATVTP-EVTTTTSTSTTTTT 1194

Query: 434  SESADGASQLQEFSQAETVDAHAT 363
              + D    +Q+ SQAE   +H T
Sbjct: 1195 ESTKDEGLDMQQDSQAEAESSHVT 1218

>MYCN_MARMO (Q61976) N-myc proto-oncogene protein (N-myc1)|
          Length = 460

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 596 ATI*DALQVANATAAAPPREKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESAD 420
           A +  A   A+A  AAPPR   +    G  + + T+ +DT   S   D +     E  D
Sbjct: 216 AAVAGAAAPASAAVAAPPRLGGRPANGGDHKALSTSGEDTLSDSDDEDDEEEDEEEEID 274

>ADY4_YEAST (Q05955) Accumulates dyads protein 4|
          Length = 493

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 150 NECKKNLLIHHHQTHQPRFPRIVNSKQET 236
           N+C ++L  +H +T+Q R PRI+  K +T
Sbjct: 414 NDCSESLDDYHPRTYQFRHPRIIIDKMKT 442

>RMT2_YARLI (Q6CBX2) Arginine N-methyltransferase 2 (EC 2.1.1.-)|
          Length = 475

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 27/84 (32%), Positives = 37/84 (44%)
 Frame = -2

Query: 572 VANATAAAPPREKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFS 393
           V N   +A  R +    R  K + VE  +DD +      D +     ES DG  +  +  
Sbjct: 142 VYNEIVSAGTRSEVFLRRINKSENVEFLSDDDDEEMDVDDDEE---DESRDG-EETGDIQ 197

Query: 392 QAETVDAHATAGEEYGDIVVDGET 321
           QA   DA   A E   ++VVDGET
Sbjct: 198 QA-IADAIKQAKEAGLEVVVDGET 220

>TTC16_MOUSE (Q8C1F5) Tetratricopeptide repeat protein 16 (TPR repeat protein|
           16)
          Length = 767

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -2

Query: 572 VANATAAAPP---REKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQ 402
           + NAT   P    R+ KKA +  K +  E   D ++ TS     +   PS+S    S  +
Sbjct: 607 IQNATEVTPAYGQRDSKKATQVPKPKKTEDPKDPSQSTSTTEAPEGPRPSKSRSTLSVKE 666

Query: 401 EFSQAETVDA 372
              +A+ V A
Sbjct: 667 RIRRAKAVRA 676

>MYSH_ACACA (P47808) High molecular weight form of myosin-1 (High molecular|
            weight form of myosin I) (HMWMI)
          Length = 1577

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -2

Query: 488  ADDTEGTSKAAD---SKRTGPSESADGASQLQEFSQAETVDAHATAGEEYG 345
            ADDTEG  +A       R  P + A  A   ++ + A    A ATA  +YG
Sbjct: 1431 ADDTEGVIRAGSRPAQARAQPGQQAQPAGAARQQAAAPVQAAAATASYDYG 1481

>SMC2_XENLA (P50533) Structural maintenance of chromosome 2|
           (Chromosome-associated protein E) (Chromosome assembly
           protein XCAP-E)
          Length = 1203

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = -2

Query: 542 REKKKAVRRGK-KQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDAHA 366
           ++  KA R  K K+ V++  +D    +K   +K     +  DG S LQE SQ + V+A  
Sbjct: 321 KQNMKAEREKKRKELVKSMEED----AKVLTAKEKEVKKITDGLSSLQEASQKD-VEAFT 375

Query: 365 TAGEEYGDIVVDGETNRLGKRYGLSSRHNKRKN 267
           +A + +  +     +N  G+   L+ +    KN
Sbjct: 376 SAQQHFNAVSAGLSSNEDGEEATLAGQMMACKN 408

>PSIP1_MOUSE (Q99JF8) PC4 and SFRS1-interacting protein (Lens epithelium-derived|
           growth factor)
          Length = 528

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 615 KPQGEKRYNLRRTTGCKCHSSSPSTGEEESCEE--RKKADGRNYR**HGRNL 466
           K +G+K    +R    K   +S S  E+E  +E  +K+  GRN++  H RN+
Sbjct: 249 KKEGKKEVESKRKNLAKPGVTSTSDSEDEDDQEGEKKRKGGRNFQAAHRRNM 300


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,276,811
Number of Sequences: 219361
Number of extensions: 1324855
Number of successful extensions: 4411
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4367
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)