>CP11A_DASAM (Q92045) Cytochrome P450 11A1, mitochondrial precursor (EC|
           1.14.15.6) (CYPXIA1) (P450(SCC)) (Cholesterol side-chain
           cleavage enzyme) (Cholesterol desmolase) (Fragment)
          Length = 514

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 347 PLQWSPAQWLEESTSHIRRLFKGFLPRQ 430
           P Q++P +WL+   +H R L  GF PRQ
Sbjct: 433 PEQYNPERWLKGEDTHFRHLGFGFGPRQ 460

>VATL_CANTR (Q00607) Vacuolar ATP synthase 16 kDa proteolipid subunit (EC|
           3.6.3.14)
          Length = 160

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 541 SSLCSVYAPREAAVACPALLVNSCFPA 621
           S LC VYAP   ++ C A +V +CF A
Sbjct: 2   SDLCPVYAPFFGSIGCAAAIVFTCFGA 28

>Y1315_METJA (Q58711) Hypothetical protein MJ1315|
          Length = 361

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 468 MSRPRFTGKDLLFCLGRNPLNNLLMWLVDSSSHCAGL 358
           ++ PR   K++L+ +     NNL++ L+D  S C GL
Sbjct: 273 VNMPRQIDKNILYYIEPERFNNLIVGLIDEDSFCIGL 309

>POLG_RHDVS (Q86117) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 625  TTLGNRSLLAEQDRLRRLLWGRIQSIRMMAPEDLDAAREER 503
            T +G  S L +   LR+L W +  S  MM  E  D A+EER
Sbjct: 1660 TDIGWISKLDKSSILRQLEWSKTTSRHMMIEETYDLAKEER 1700

>POLG_RHDVB (Q89273) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 625  TTLGNRSLLAEQDRLRRLLWGRIQSIRMMAPEDLDAAREER 503
            T +G  S L +   LR+L W +  S  MM  E  D A+EER
Sbjct: 1660 TDIGWVSKLDKSSILRQLEWSKTTSRHMMIEETYDLAKEER 1700

>POLG_RHDVA (Q86119) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 625  TTLGNRSLLAEQDRLRRLLWGRIQSIRMMAPEDLDAAREER 503
            T +G  S L +   LR+L W +  S  MM  E  D A+EER
Sbjct: 1660 TDIGWVSKLDKSSILRQLEWSKTTSRHMMIEETYDLAKEER 1700

>Y092_MYCBO (P65347) Putative methyltransferase Mb0092 (EC 2.1.1.-)|
          Length = 197

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 347 PLQWSPAQWLEESTSHIRRLFKGFLPRQNNKSFPVKRGRLMVT 475
           P++W P Q L E  SH+R L  G   R+      +  GR++VT
Sbjct: 156 PIKWPPPQTLHELRSHVRALLPGACIRR------LLYGRVLVT 192

>Y089_MYCTU (P65346) Putative methyltransferase Rv0089/MT0098 (EC 2.1.1.-)|
          Length = 197

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 347 PLQWSPAQWLEESTSHIRRLFKGFLPRQNNKSFPVKRGRLMVT 475
           P++W P Q L E  SH+R L  G   R+      +  GR++VT
Sbjct: 156 PIKWPPPQTLHELRSHVRALLPGACIRR------LLYGRVLVT 192

>FIBB_RAT (P14480) Fibrinogen beta chain precursor [Contains: Fibrinopeptide|
           B]
          Length = 479

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
 Frame = +1

Query: 73  VIADRKLYT--TLNNNIPLQTRII-----DLNYKLDRTSPDI 177
           ++ D+KLY   T+N+NIPL  R++     DL  K+ +   DI
Sbjct: 163 ILEDQKLYIDETVNDNIPLNLRVLRSILEDLRSKMQKLESDI 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,384,113
Number of Sequences: 219361
Number of extensions: 1840936
Number of successful extensions: 4144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4142
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7196276819
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)