ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1p11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 303 4e-79
2gb|AC135207.2| Oryza sativa (japonica cultivar-group) chromosome... 303 4e-79
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 303 4e-79
4dbj|AK066433.1| Oryza sativa (japonica cultivar-group) cDNA clon... 303 4e-79
5gb|AC121136.11| Mus musculus chromosome 8, clone RP23-339I14, co... 44 0.62
6gb|AC024198.7| Homo sapiens BAC clone RP11-777N19 from 4, comple... 44 0.62
7emb|BX005164.9| Mouse DNA sequence from clone RP23-257P3 on chro... 44 0.62
8dbj|AP003062.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 44 0.62
9dbj|AP003050.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 44 0.62
10gb|AC005172.1|AC005172 Homo sapiens chromosome 4 clone B320H23 m... 44 0.62
11gb|AC004062.1|AC004062 Homo sapiens chromosome 4 clone B316M24 m... 44 0.62
12ref|XM_518986.1| PREDICTED: Pan troglodytes similar to histone d... 42 2.5
13gb|AC097117.12| Rattus norvegicus 1 BAC CH230-36C10 (Children's ... 42 2.5
14ref|XM_615498.2| PREDICTED: Bos taurus similar to histone deacet... 42 2.5
15gb|AC147091.2| Pan troglodytes BAC clone RP43-57O16 from 7, comp... 42 2.5
16gb|AC002124.2| Homo sapiens BAC clone CTB-180O1 from 7, complete... 42 2.5
17ref|XM_857663.1| PREDICTED: Canis familiaris similar to histone ... 42 2.5
18ref|XM_857636.1| PREDICTED: Canis familiaris similar to histone ... 42 2.5
19ref|XM_539456.2| PREDICTED: Canis familiaris similar to histone ... 42 2.5
20ref|XM_857589.1| PREDICTED: Canis familiaris similar to histone ... 42 2.5
21ref|XM_857563.1| PREDICTED: Canis familiaris similar to histone ... 42 2.5
22emb|CR860468.1| Pongo pygmaeus mRNA; cDNA DKFZp459E171 (from clo... 42 2.5
23emb|CR749550.1| Homo sapiens mRNA; cDNA DKFZp779K1053 (from clon... 42 2.5
24emb|CR854925.5| Zebrafish DNA sequence from clone CH211-199I24 i... 42 2.5
25gb|AC090994.8| Homo sapiens chromosome 8, clone RP11-536K17, com... 42 2.5
26ref|NM_178425.1| Homo sapiens histone deacetylase 9 (HDAC9), tra... 42 2.5
27ref|NM_178423.1| Homo sapiens histone deacetylase 9 (HDAC9), tra... 42 2.5
28ref|NM_058177.1| Homo sapiens histone deacetylase 9 (HDAC9), tra... 42 2.5
29ref|NM_058176.1| Homo sapiens histone deacetylase 9 (HDAC9), tra... 42 2.5
30ref|NM_014707.1| Homo sapiens histone deacetylase 9 (HDAC9), tra... 42 2.5
31dbj|AK097178.1| Homo sapiens cDNA FLJ39859 fis, clone SPLEN20150... 42 2.5
32gb|AY032738.1| Homo sapiens histone deacetylase 9a (HDAC9) mRNA,... 42 2.5
33gb|AY032737.1| Homo sapiens histone deacetylase 9 (HDAC9) mRNA, ... 42 2.5
34gb|AY197371.1| Homo sapiens histone deacetylase 9 (HDAC9) mRNA, ... 42 2.5
35gb|AC154914.3| Pan troglodytes BAC clone RP43-172A19 from chromo... 42 2.5
36dbj|AB018287.1| Homo sapiens mRNA for KIAA0744 protein, partial cds 42 2.5
37gb|AF411134.1| Lactuca sativa phenylalanine ammonia-lyase2 mRNA,... 42 2.5
38gb|BC111735.1| Homo sapiens histone deacetylase 9, mRNA (cDNA cl... 42 2.5
39emb|AJ459808.1|HSA459808 Homo sapiens mRNA for histone decetylas... 42 2.5
40gb|AC161521.16| Mus musculus chromosome 19, clone RP24-124P14, c... 40 9.7
41gb|AC154871.13| Mus musculus chromosome 1, clone RP23-354B17, co... 40 9.7
42gb|AY216660.1| Enterobacteria phage T1, complete genome 40 9.7
43gb|AC132392.3| Mus musculus BAC clone RP23-386F15 from chromosom... 40 9.7
44emb|AL080248.7|HSBA19D2 Human DNA sequence from clone RP11-19D2 ... 40 9.7
45emb|AL596326.5| Human DNA sequence from clone RP11-373J16 on chr... 40 9.7
46emb|BX323459.20| Zebrafish DNA sequence from clone DKEYP-27C11 i... 40 9.7
47gb|AC023403.9| Homo sapiens chromosome 8, clone RP11-563N12, com... 40 9.7
48gb|AF281246.1|AF281246 Nicotiana tabacum Agrobacterium rhizogene... 40 9.7
49dbj|AK053370.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 9.7
50gb|AC007971.3| Homo sapiens BAC clone RP11-510C23 from 2, comple... 40 9.7
51dbj|AB107916.1| Actineria villosa Av60A mRNA for AvTX-60A, compl... 40 9.7
52emb|CR388178.5| Zebrafish DNA sequence from clone DKEY-114D20 in... 40 9.7
53emb|AL138499.4|CNS01DWU Human chromosome 14 DNA sequence BAC R-1... 40 9.7
54gb|AF063866.1|AF063866 Melanoplus sanguinipes entomopoxvirus, co... 40 9.7
55gb|AC147551.5| Mus musculus BAC clone RP23-77G5 from 18, complet... 40 9.7
56emb|CR628370.28| Zebrafish DNA sequence from clone DKEY-33L16 in... 40 9.7
57gb|AC130472.2| Homo sapiens chromosome 3 clone RP11-395P16, comp... 40 9.7
58dbj|D16559.1|TOBNGORF Nicotiana glauca NgORF13 and NgORF14 gene,... 40 9.7
59dbj|AB063315.1| Phyllodiscus semoni ptx60a mRNA for PsTX-60A, co... 40 9.7
60emb|AL645466.12| Mouse DNA sequence from clone RP23-162P18 on ch... 40 9.7 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  303 bits (153), Expect = 4e-79
 Identities = 294/341 (86%)
 Strand = Plus / Plus

                                                                           
Query: 366     cgcagtggctcgaagaatctaccagccacatcaggaggttgttcaaaggattcctcccca 425
               ||||| ||||||||||||||||||||||| |||||||||||||| ||  |||||||||||
Sbjct: 9048741 cgcagaggctcgaagaatctaccagccacgtcaggaggttgttcgaaacattcctcccca 9048800

                                                                           
Query: 426     ggcagaacaacaagtccttcccggtgaagcgtggacggctcatggtaacatgtaatccac 485
               |||| ||||| ||| ||||||   ||||| |||||||| |||||||| || |||||||||
Sbjct: 9048801 ggcaaaacaagaagaccttccacatgaagtgtggacggttcatggtagcacgtaatccac 9048860

                                                                           
Query: 486     aatgagtcaacgagttgcctttcctctcgtgcggcatcaaggtcctcaggagccatcatc 545
               | ||| || ||||||||||| ||||| ||||| ||||||||||| || ||||||||||||
Sbjct: 9048861 agtgaatctacgagttgcctctcctcgcgtgcagcatcaaggtcttctggagccatcatc 9048920

                                                                           
Query: 546     cttatgctctgtatacgcccccagagaagccgccgtagcctgtcctgctctgctagtaaa 605
               ||||| |||| ||||||  ||  ||||||||| || |||||||| || |||||||||| |
Sbjct: 9048921 cttattctctctatacgtgcctggagaagccgtcgaagcctgtcatgatctgctagtaga 9048980

                                                                           
Query: 606     ctcctgtttcccagcgttgtgtcctttgcaagctcaagcaggcctcctagtgccgcttct 665
               |||||  ||||||| || |||||| |||||||||||||||| ||||||| ||| ||||||
Sbjct: 9048981 ctcctacttcccagtgtcgtgtcccttgcaagctcaagcagtcctcctaatgcagcttct 9049040

                                                        
Query: 666     cgaacaccagagtcatcactggataccagacgcatcataag 706
               ||||||||  ||||||||||||| |||| | ||||||||||
Sbjct: 9049041 cgaacacccaagtcatcactggacaccaaatgcatcataag 9049081



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                          
Query: 272     tggacctagaagcagcataattcctcccatgattccatttcctggatctgatctctcat 330
               |||||||| ||||||||| |||||||||    |||||| ||||||||||||||||||||
Sbjct: 9048653 tggacctaaaagcagcatcattcctcccccagttccatctcctggatctgatctctcat 9048711
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>gb|AC135207.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1261C08,
             complete sequence
          Length = 99910

 Score =  303 bits (153), Expect = 4e-79
 Identities = 294/341 (86%)
 Strand = Plus / Plus

                                                                         
Query: 366   cgcagtggctcgaagaatctaccagccacatcaggaggttgttcaaaggattcctcccca 425
             ||||| ||||||||||||||||||||||| |||||||||||||| ||  |||||||||||
Sbjct: 55777 cgcagaggctcgaagaatctaccagccacgtcaggaggttgttcgaaacattcctcccca 55836

                                                                         
Query: 426   ggcagaacaacaagtccttcccggtgaagcgtggacggctcatggtaacatgtaatccac 485
             |||| ||||| ||| ||||||   ||||| |||||||| |||||||| || |||||||||
Sbjct: 55837 ggcaaaacaagaagaccttccacatgaagtgtggacggttcatggtagcacgtaatccac 55896

                                                                         
Query: 486   aatgagtcaacgagttgcctttcctctcgtgcggcatcaaggtcctcaggagccatcatc 545
             | ||| || ||||||||||| ||||| ||||| ||||||||||| || ||||||||||||
Sbjct: 55897 agtgaatctacgagttgcctctcctcgcgtgcagcatcaaggtcttctggagccatcatc 55956

                                                                         
Query: 546   cttatgctctgtatacgcccccagagaagccgccgtagcctgtcctgctctgctagtaaa 605
             ||||| |||| ||||||  ||  ||||||||| || |||||||| || |||||||||| |
Sbjct: 55957 cttattctctctatacgtgcctggagaagccgtcgaagcctgtcatgatctgctagtaga 56016

                                                                         
Query: 606   ctcctgtttcccagcgttgtgtcctttgcaagctcaagcaggcctcctagtgccgcttct 665
             |||||  ||||||| || |||||| |||||||||||||||| ||||||| ||| ||||||
Sbjct: 56017 ctcctacttcccagtgtcgtgtcccttgcaagctcaagcagtcctcctaatgcagcttct 56076

                                                      
Query: 666   cgaacaccagagtcatcactggataccagacgcatcataag 706
             ||||||||  ||||||||||||| |||| | ||||||||||
Sbjct: 56077 cgaacacccaagtcatcactggacaccaaatgcatcataag 56117



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 272   tggacctagaagcagcataattcctcccatgattccatttcctggatctgatctctcat 330
             |||||||| ||||||||| |||||||||    |||||| ||||||||||||||||||||
Sbjct: 55689 tggacctaaaagcagcatcattcctcccccagttccatctcctggatctgatctctcat 55747
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  303 bits (153), Expect = 4e-79
 Identities = 294/341 (86%)
 Strand = Plus / Plus

                                                                           
Query: 366     cgcagtggctcgaagaatctaccagccacatcaggaggttgttcaaaggattcctcccca 425
               ||||| ||||||||||||||||||||||| |||||||||||||| ||  |||||||||||
Sbjct: 9046574 cgcagaggctcgaagaatctaccagccacgtcaggaggttgttcgaaacattcctcccca 9046633

                                                                           
Query: 426     ggcagaacaacaagtccttcccggtgaagcgtggacggctcatggtaacatgtaatccac 485
               |||| ||||| ||| ||||||   ||||| |||||||| |||||||| || |||||||||
Sbjct: 9046634 ggcaaaacaagaagaccttccacatgaagtgtggacggttcatggtagcacgtaatccac 9046693

                                                                           
Query: 486     aatgagtcaacgagttgcctttcctctcgtgcggcatcaaggtcctcaggagccatcatc 545
               | ||| || ||||||||||| ||||| ||||| ||||||||||| || ||||||||||||
Sbjct: 9046694 agtgaatctacgagttgcctctcctcgcgtgcagcatcaaggtcttctggagccatcatc 9046753

                                                                           
Query: 546     cttatgctctgtatacgcccccagagaagccgccgtagcctgtcctgctctgctagtaaa 605
               ||||| |||| ||||||  ||  ||||||||| || |||||||| || |||||||||| |
Sbjct: 9046754 cttattctctctatacgtgcctggagaagccgtcgaagcctgtcatgatctgctagtaga 9046813

                                                                           
Query: 606     ctcctgtttcccagcgttgtgtcctttgcaagctcaagcaggcctcctagtgccgcttct 665
               |||||  ||||||| || |||||| |||||||||||||||| ||||||| ||| ||||||
Sbjct: 9046814 ctcctacttcccagtgtcgtgtcccttgcaagctcaagcagtcctcctaatgcagcttct 9046873

                                                        
Query: 666     cgaacaccagagtcatcactggataccagacgcatcataag 706
               ||||||||  ||||||||||||| |||| | ||||||||||
Sbjct: 9046874 cgaacacccaagtcatcactggacaccaaatgcatcataag 9046914



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                          
Query: 272     tggacctagaagcagcataattcctcccatgattccatttcctggatctgatctctcat 330
               |||||||| ||||||||| |||||||||    |||||| ||||||||||||||||||||
Sbjct: 9046486 tggacctaaaagcagcatcattcctcccccagttccatctcctggatctgatctctcat 9046544
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>dbj|AK066433.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059F23, full
            insert sequence
          Length = 1580

 Score =  303 bits (153), Expect = 4e-79
 Identities = 294/341 (86%)
 Strand = Plus / Minus

                                                                        
Query: 366  cgcagtggctcgaagaatctaccagccacatcaggaggttgttcaaaggattcctcccca 425
            ||||| ||||||||||||||||||||||| |||||||||||||| ||  |||||||||||
Sbjct: 1160 cgcagaggctcgaagaatctaccagccacgtcaggaggttgttcgaaacattcctcccca 1101

                                                                        
Query: 426  ggcagaacaacaagtccttcccggtgaagcgtggacggctcatggtaacatgtaatccac 485
            |||| ||||| ||| ||||||   ||||| |||||||| |||||||| || |||||||||
Sbjct: 1100 ggcaaaacaagaagaccttccacatgaagtgtggacggttcatggtagcacgtaatccac 1041

                                                                        
Query: 486  aatgagtcaacgagttgcctttcctctcgtgcggcatcaaggtcctcaggagccatcatc 545
            | ||| || ||||||||||| ||||| ||||| ||||||||||| || ||||||||||||
Sbjct: 1040 agtgaatctacgagttgcctctcctcgcgtgcagcatcaaggtcttctggagccatcatc 981

                                                                        
Query: 546  cttatgctctgtatacgcccccagagaagccgccgtagcctgtcctgctctgctagtaaa 605
            ||||| |||| ||||||  ||  ||||||||| || |||||||| || |||||||||| |
Sbjct: 980  cttattctctctatacgtgcctggagaagccgtcgaagcctgtcatgatctgctagtaga 921

                                                                        
Query: 606  ctcctgtttcccagcgttgtgtcctttgcaagctcaagcaggcctcctagtgccgcttct 665
            |||||  ||||||| || |||||| |||||||||||||||| ||||||| ||| ||||||
Sbjct: 920  ctcctacttcccagtgtcgtgtcccttgcaagctcaagcagtcctcctaatgcagcttct 861

                                                     
Query: 666  cgaacaccagagtcatcactggataccagacgcatcataag 706
            ||||||||  ||||||||||||| |||| | ||||||||||
Sbjct: 860  cgaacacccaagtcatcactggacaccaaatgcatcataag 820



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 272  tggacctagaagcagcataattcctcccatgattccatttcctggatctgatctctcat 330
            |||||||| ||||||||| |||||||||    |||||| ||||||||||||||||||||
Sbjct: 1248 tggacctaaaagcagcatcattcctcccccagttccatctcctggatctgatctctcat 1190
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>gb|AC121136.11| Mus musculus chromosome 8, clone RP23-339I14, complete sequence
          Length = 202411

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 159   tagaactagccctgatattcctagct 184
             ||||||||||||||| ||||||||||
Sbjct: 51404 tagaactagccctgagattcctagct 51429
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>gb|AC024198.7| Homo sapiens BAC clone RP11-777N19 from 4, complete sequence
          Length = 194702

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 306  ccatttcctggatctgatctct 327
            ||||||||||||||||||||||
Sbjct: 7131 ccatttcctggatctgatctct 7110
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>emb|BX005164.9| Mouse DNA sequence from clone RP23-257P3 on chromosome X, complete
              sequence
          Length = 168756

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 159    tagaactagccctgatattcctagct 184
              ||||||||||||||||||| ||||||
Sbjct: 147348 tagaactagccctgatatttctagct 147373
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>dbj|AP003062.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-555G19, complete
             sequence
          Length = 171428

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 186   taaataaaggacatcaaactcc 207
             ||||||||||||||||||||||
Sbjct: 15170 taaataaaggacatcaaactcc 15191
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>dbj|AP003050.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-410I24, complete
              sequence
          Length = 152715

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 186    taaataaaggacatcaaactcc 207
              ||||||||||||||||||||||
Sbjct: 126410 taaataaaggacatcaaactcc 126431
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>gb|AC005172.1|AC005172 Homo sapiens chromosome 4 clone B320H23 map 4q25, complete sequence
          Length = 74935

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 306   ccatttcctggatctgatctct 327
             ||||||||||||||||||||||
Sbjct: 65087 ccatttcctggatctgatctct 65108
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>gb|AC004062.1|AC004062 Homo sapiens chromosome 4 clone B316M24 map 4q25, complete sequence
          Length = 154252

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 306  ccatttcctggatctgatctct 327
            ||||||||||||||||||||||
Sbjct: 9298 ccatttcctggatctgatctct 9319
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>ref|XM_518986.1| PREDICTED: Pan troglodytes similar to histone deacetylase 9 isoform
            5; MEF-2 interacting transcription repressor (MITR)
            protein; histone deacetylase 7B; histone deacetylase 7;
            histone deacetylase 4/5-related protein (LOC463280), mRNA
          Length = 4287

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1919 gattccatttcctggatctga 1899
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>gb|AC097117.12| Rattus norvegicus 1 BAC CH230-36C10 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 197926

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 604    aactcctgtttcccagcgttgtgtc 628
              ||||| |||||||||||||||||||
Sbjct: 132186 aactcttgtttcccagcgttgtgtc 132210
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>ref|XM_615498.2| PREDICTED: Bos taurus similar to histone deacetylase 9 isoform 5
            (LOC535415), partial mRNA
          Length = 2922

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1859 gattccatttcctggatctga 1839
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>gb|AC147091.2| Pan troglodytes BAC clone RP43-57O16 from 7, complete sequence
          Length = 170233

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 302    gattccatttcctggatctga 322
              |||||||||||||||||||||
Sbjct: 155446 gattccatttcctggatctga 155426
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>gb|AC002124.2| Homo sapiens BAC clone CTB-180O1 from 7, complete sequence
          Length = 100923

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 302   gattccatttcctggatctga 322
             |||||||||||||||||||||
Sbjct: 26020 gattccatttcctggatctga 26040
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>ref|XM_857663.1| PREDICTED: Canis familiaris similar to histone deacetylase 9 isoform
            5, transcript variant 5 (TWIST), mRNA
          Length = 4212

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1802 gattccatttcctggatctga 1782
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>ref|XM_857636.1| PREDICTED: Canis familiaris similar to histone deacetylase 9 isoform
            5, transcript variant 4 (TWIST), mRNA
          Length = 2922

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1976 gattccatttcctggatctga 1956
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>ref|XM_539456.2| PREDICTED: Canis familiaris similar to histone deacetylase 9 isoform
            5, transcript variant 1 (TWIST), mRNA
          Length = 2778

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1832 gattccatttcctggatctga 1812
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>ref|XM_857589.1| PREDICTED: Canis familiaris similar to histone deacetylase 9 isoform
            5, transcript variant 3 (TWIST), mRNA
          Length = 2666

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1821 gattccatttcctggatctga 1801
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>ref|XM_857563.1| PREDICTED: Canis familiaris similar to histone deacetylase 9 isoform
            5, transcript variant 2 (TWIST), mRNA
          Length = 4242

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1832 gattccatttcctggatctga 1812
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>emb|CR860468.1| Pongo pygmaeus mRNA; cDNA DKFZp459E171 (from clone DKFZp459E171)
          Length = 4126

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1708 gattccatttcctggatctga 1688
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>emb|CR749550.1| Homo sapiens mRNA; cDNA DKFZp779K1053 (from clone DKFZp779K1053)
          Length = 4347

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1811 gattccatttcctggatctga 1791
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>emb|CR854925.5| Zebrafish DNA sequence from clone CH211-199I24 in linkage group 13,
             complete sequence
          Length = 58279

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 96    cacaacactcaacaacaacat 116
             |||||||||||||||||||||
Sbjct: 35585 cacaacactcaacaacaacat 35605
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>gb|AC090994.8| Homo sapiens chromosome 8, clone RP11-536K17, complete sequence
          Length = 200326

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 146   attacaaacttgatagaacta 166
             |||||||||||||||||||||
Sbjct: 18714 attacaaacttgatagaacta 18694
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>ref|NM_178425.1| Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 5,
            mRNA
          Length = 3210

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1703 gattccatttcctggatctga 1683
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>ref|NM_178423.1| Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 4,
            mRNA
          Length = 4659

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1844 gattccatttcctggatctga 1824
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>ref|NM_058177.1| Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 2,
            mRNA
          Length = 2790

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1844 gattccatttcctggatctga 1824
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>ref|NM_058176.1| Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 1,
            mRNA
          Length = 3186

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1844 gattccatttcctggatctga 1824
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>ref|NM_014707.1| Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 3,
            mRNA
          Length = 4238

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1844 gattccatttcctggatctga 1824
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>dbj|AK097178.1| Homo sapiens cDNA FLJ39859 fis, clone SPLEN2015094, moderately
            similar to Mus musculus histone deacetylase mHDA1 mRNA
          Length = 2557

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1706 gattccatttcctggatctga 1686
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>gb|AY032738.1| Homo sapiens histone deacetylase 9a (HDAC9) mRNA, complete cds,
            alternatively spliced
          Length = 2640

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1694 gattccatttcctggatctga 1674
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>gb|AY032737.1| Homo sapiens histone deacetylase 9 (HDAC9) mRNA, complete cds,
            alternatively spliced
          Length = 3036

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1694 gattccatttcctggatctga 1674
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>gb|AY197371.1| Homo sapiens histone deacetylase 9 (HDAC9) mRNA, complete cds;
            alternatively spliced
          Length = 3210

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1703 gattccatttcctggatctga 1683
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>gb|AC154914.3| Pan troglodytes BAC clone RP43-172A19 from chromosome 7, complete
              sequence
          Length = 154883

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 302    gattccatttcctggatctga 322
              |||||||||||||||||||||
Sbjct: 139084 gattccatttcctggatctga 139104
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>dbj|AB018287.1| Homo sapiens mRNA for KIAA0744 protein, partial cds
          Length = 4238

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1844 gattccatttcctggatctga 1824
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>gb|AF411134.1| Lactuca sativa phenylalanine ammonia-lyase2 mRNA, complete cds
          Length = 2380

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 32   acattacaattacatacacat 52
            |||||||||||||||||||||
Sbjct: 2304 acattacaattacatacacat 2284
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>gb|BC111735.1| Homo sapiens histone deacetylase 9, mRNA (cDNA clone IMAGE:40036015),
            partial cds
          Length = 3076

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1570 gattccatttcctggatctga 1550
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>emb|AJ459808.1|HSA459808 Homo sapiens mRNA for histone decetylase 9b (HDAC9B gene)
          Length = 4659

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  gattccatttcctggatctga 322
            |||||||||||||||||||||
Sbjct: 1844 gattccatttcctggatctga 1824
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>gb|AC161521.16| Mus musculus chromosome 19, clone RP24-124P14, complete sequence
          Length = 169497

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 522   tcaaggtcctcaggagccat 541
             ||||||||||||||||||||
Sbjct: 11789 tcaaggtcctcaggagccat 11808
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>gb|AC154871.13| Mus musculus chromosome 1, clone RP23-354B17, complete sequence
          Length = 211644

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 607   tcctgtttcccagcgttgtg 626
             ||||||||||||||||||||
Sbjct: 37365 tcctgtttcccagcgttgtg 37384
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>gb|AY216660.1| Enterobacteria phage T1, complete genome
          Length = 48836

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   ttacaaacttgatagaacta 166
             ||||||||||||||||||||
Sbjct: 33820 ttacaaacttgatagaacta 33801
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>gb|AC132392.3| Mus musculus BAC clone RP23-386F15 from chromosome 7, complete sequence
          Length = 208499

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 528    tcctcaggagccatcatcct 547
              ||||||||||||||||||||
Sbjct: 135169 tcctcaggagccatcatcct 135150
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>emb|AL080248.7|HSBA19D2 Human DNA sequence from clone RP11-19D2 on chromosome 20 Contains the a
             novel gene and the 5' end of a novel gene, complete
             sequence
          Length = 166913

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   tataaataaaggacatcaaa 203
             ||||||||||||||||||||
Sbjct: 50824 tataaataaaggacatcaaa 50843
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>emb|AL596326.5| Human DNA sequence from clone RP11-373J16 on chromosome 1 Contains the
             3' end of a novel gene, a glyceraldehyde-3-phosphate
             dehydrogenase (GAPD) pseudogene and a CpG island, complete
             sequence
          Length = 178309

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   ctcccatgattccatttcct 314
             ||||||||||||||||||||
Sbjct: 93463 ctcccatgattccatttcct 93444
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>emb|BX323459.20| Zebrafish DNA sequence from clone DKEYP-27C11 in linkage group 6,
              complete sequence
          Length = 168538

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 91     ttatacacaacactcaacaacaacatac 118
              |||||||||||||| |||||||| ||||
Sbjct: 121689 ttatacacaacactaaacaacaatatac 121662
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>gb|AC023403.9| Homo sapiens chromosome 8, clone RP11-563N12, complete sequence
          Length = 193461

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 352   gcaatggagcccggcgcagtggct 375
             ||||||| ||||||||||||||||
Sbjct: 19331 gcaatggggcccggcgcagtggct 19354
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>gb|AF281246.1|AF281246 Nicotiana tabacum Agrobacterium rhizogenes Ri plasmid ORF13-like
           sequence.~~
          Length = 529

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 259 agttacccggtgctggacct 278
           ||||||||||||||||||||
Sbjct: 105 agttacccggtgctggacct 124
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>dbj|AK053370.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130012F07 product:hypothetical Calponin
            homology (CH) domain/LIM domain/Calponin homology domain
            profile/LIM domain profile containing protein, full
            insert sequence
          Length = 4495

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 528  tcctcaggagccatcatcct 547
            ||||||||||||||||||||
Sbjct: 1989 tcctcaggagccatcatcct 2008
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>gb|AC007971.3| Homo sapiens BAC clone RP11-510C23 from 2, complete sequence
          Length = 146705

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   tcaaactcctagtctctagt 218
             ||||||||||||||||||||
Sbjct: 65925 tcaaactcctagtctctagt 65906
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>dbj|AB107916.1| Actineria villosa Av60A mRNA for AvTX-60A, complete cds
          Length = 1619

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 gccctgatattcctagctat 186
           ||||||||||||||||||||
Sbjct: 94  gccctgatattcctagctat 113
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>emb|CR388178.5| Zebrafish DNA sequence from clone DKEY-114D20 in linkage group 22,
              complete sequence
          Length = 171742

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 585    ctgtcctgctctgctagtaa 604
              ||||||||||||||||||||
Sbjct: 134558 ctgtcctgctctgctagtaa 134577
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>emb|AL138499.4|CNS01DWU Human chromosome 14 DNA sequence BAC R-132J14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185713

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   ggagcccggcgcagtggctc 376
             ||||||||||||||||||||
Sbjct: 63655 ggagcccggcgcagtggctc 63636
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>gb|AF063866.1|AF063866 Melanoplus sanguinipes entomopoxvirus, complete genome
          Length = 236120

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    attatacacaacactcaaca 109
             ||||||||||||||||||||
Sbjct: 59161 attatacacaacactcaaca 59142
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>gb|AC147551.5| Mus musculus BAC clone RP23-77G5 from 18, complete sequence
          Length = 275269

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    cccagttcaggatgatcaat 251
              ||||||||||||||||||||
Sbjct: 149933 cccagttcaggatgatcaat 149952
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>emb|CR628370.28| Zebrafish DNA sequence from clone DKEY-33L16 in linkage group 22,
             complete sequence
          Length = 190967

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 585   ctgtcctgctctgctagtaa 604
             ||||||||||||||||||||
Sbjct: 47325 ctgtcctgctctgctagtaa 47344
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>gb|AC130472.2| Homo sapiens chromosome 3 clone RP11-395P16, complete sequence
          Length = 194160

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   tcaaactcctagtctctagt 218
             ||||||||||||||||||||
Sbjct: 76832 tcaaactcctagtctctagt 76813
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>dbj|D16559.1|TOBNGORF Nicotiana glauca NgORF13 and NgORF14 gene, complete cds
          Length = 4398

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  agttacccggtgctggacct 278
            ||||||||||||||||||||
Sbjct: 2794 agttacccggtgctggacct 2813
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>dbj|AB063315.1| Phyllodiscus semoni ptx60a mRNA for PsTX-60A, complete cds
          Length = 1664

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 gccctgatattcctagctat 186
           ||||||||||||||||||||
Sbjct: 79  gccctgatattcctagctat 98
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>emb|AL645466.12| Mouse DNA sequence from clone RP23-162P18 on chromosome X, complete
             sequence
          Length = 141324

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   tataaataaaggacatcaaa 203
             ||||||||||||||||||||
Sbjct: 29829 tataaataaaggacatcaaa 29848


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,831,722
Number of Sequences: 3902068
Number of extensions: 5831722
Number of successful extensions: 99208
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99050
Number of HSP's gapped (non-prelim): 158
length of query: 710
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 687
effective length of database: 17,143,297,704
effective search space: 11777445522648
effective search space used: 11777445522648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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