ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2e15 |
|---|---|
| Clone Library Name | barley_pub |
>HBP1B_WHEAT (P23923) Transcription factor HBP-1b(c38)| Length = 332 Score = 214 bits (545), Expect = 2e-55 Identities = 117/142 (82%), Positives = 117/142 (82%) Frame = -1 Query: 638 GGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAXXX 459 GGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLA Sbjct: 191 GGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAGSI 250 Query: 458 XXXXXXXXGNVANYMGQMAMAMGKLGTLENFLRQADNLRQQTLQQMQRILTTRQSARALL 279 GNVANYMGQMAMAMGKLGTLENFL QADNLRQQTLQQMQRILTTRQSARALL Sbjct: 251 GSSGSGSTGNVANYMGQMAMAMGKLGTLENFLSQADNLRQQTLQQMQRILTTRQSARALL 310 Query: 278 VISDYXXXXXXXXXXXXXRPKE 213 VISDY RPKE Sbjct: 311 VISDYSSRLRALSSLWLARPKE 332
>HBP1C_WHEAT (Q41558) Transcription factor HBP-1b(c1) (Fragment)| Length = 476 Score = 196 bits (497), Expect = 6e-50 Identities = 109/142 (76%), Positives = 113/142 (79%) Frame = -1 Query: 638 GGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAXXX 459 GGFR SELLKLL+ QLEPLTEQQL+GICNLQQSSQQAEDALSQGMEALQQSLAETLA Sbjct: 336 GGFRSSELLKLLAGQLEPLTEQQLTGICNLQQSSQQAEDALSQGMEALQQSLAETLASGS 395 Query: 458 XXXXXXXXGNVANYMGQMAMAMGKLGTLENFLRQADNLRQQTLQQMQRILTTRQSARALL 279 NVA+YMGQMAMAMGKLGTLENFLRQADNLR QTLQQMQRILTTRQSARALL Sbjct: 396 LGPAGSSG-NVASYMGQMAMAMGKLGTLENFLRQADNLRLQTLQQMQRILTTRQSARALL 454 Query: 278 VISDYXXXXXXXXXXXXXRPKE 213 ISDY RP+E Sbjct: 455 AISDYFSRLRALSSLWLARPRE 476
>TGA21_TOBAC (O24160) TGACG-sequence-specific DNA-binding protein TGA-2.1| (TGA2.1) Length = 456 Score = 187 bits (474), Expect = 3e-47 Identities = 104/142 (73%), Positives = 110/142 (77%) Frame = -1 Query: 638 GGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAXXX 459 GGFRPSELLKLL QLEPLTEQQL+GI NLQQSS QAEDALSQGMEALQQSLAETLA Sbjct: 313 GGFRPSELLKLLVNQLEPLTEQQLAGIYNLQQSSHQAEDALSQGMEALQQSLAETLANGS 372 Query: 458 XXXXXXXXGNVANYMGQMAMAMGKLGTLENFLRQADNLRQQTLQQMQRILTTRQSARALL 279 +VANYMGQMAMAMGKLGTLE FLRQADNLRQQTLQQM R+LTTRQSARALL Sbjct: 373 PAPEGSSG-DVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRVLTTRQSARALL 431 Query: 278 VISDYXXXXXXXXXXXXXRPKE 213 I++Y RP+E Sbjct: 432 AINEYFSRLRALSSLWLARPRE 453
>TGA2_ARATH (P43273) Transcription factor TGA2 (HBP-1b homolog) (AHBP-1b)| (AtbZIP20) Length = 330 Score = 176 bits (447), Expect = 4e-44 Identities = 97/142 (68%), Positives = 108/142 (76%) Frame = -1 Query: 638 GGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAXXX 459 GGFR SELLKLL+ QLEP+TE+QL GI NLQQ+SQQAEDALSQGME+LQQSLA+TL+ Sbjct: 191 GGFRSSELLKLLANQLEPMTERQLMGINNLQQTSQQAEDALSQGMESLQQSLADTLSSGT 250 Query: 458 XXXXXXXXGNVANYMGQMAMAMGKLGTLENFLRQADNLRQQTLQQMQRILTTRQSARALL 279 NVA+YMGQMAMAMGKLGTLE F+RQADNLR QTLQQM R+LTTRQSARALL Sbjct: 251 LGSSSSG--NVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTLQQMIRVLTTRQSARALL 308 Query: 278 VISDYXXXXXXXXXXXXXRPKE 213 I DY RP+E Sbjct: 309 AIHDYFSRLRALSSLWLARPRE 330
>TGA6_ARATH (Q39140) Transcription factor TGA6 (AtbZIP45)| Length = 330 Score = 172 bits (437), Expect = 6e-43 Identities = 94/142 (66%), Positives = 108/142 (76%) Frame = -1 Query: 638 GGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAXXX 459 GGFR SELLKLL+ QLEP+TE+Q+ GI +LQQ+SQQAEDALSQGME+LQQSLA+TL+ Sbjct: 191 GGFRSSELLKLLANQLEPMTERQVMGINSLQQTSQQAEDALSQGMESLQQSLADTLSSGT 250 Query: 458 XXXXXXXXGNVANYMGQMAMAMGKLGTLENFLRQADNLRQQTLQQMQRILTTRQSARALL 279 NVA+YMGQMAMAMG+LGTLE F+RQADNLR QTLQQM R+LTTRQSARALL Sbjct: 251 LGSSSSD--NVASYMGQMAMAMGQLGTLEGFIRQADNLRLQTLQQMLRVLTTRQSARALL 308 Query: 278 VISDYXXXXXXXXXXXXXRPKE 213 I DY RP+E Sbjct: 309 AIHDYSSRLRALSSLWLARPRE 330
>TGA5_ARATH (Q39163) Transcription factor TGA5 (Ocs element-binding factor 5)| (OBF5) (AtbZIP26) Length = 330 Score = 167 bits (424), Expect = 2e-41 Identities = 93/142 (65%), Positives = 105/142 (73%) Frame = -1 Query: 638 GGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAXXX 459 GGFR SELLKL+++QLEPLTEQQ I NLQQSSQQAEDALSQGM+ LQQSLA+TL+ Sbjct: 191 GGFRSSELLKLIASQLEPLTEQQSLDINNLQQSSQQAEDALSQGMDNLQQSLADTLSSGT 250 Query: 458 XXXXXXXXGNVANYMGQMAMAMGKLGTLENFLRQADNLRQQTLQQMQRILTTRQSARALL 279 NVA+YMGQMAMAMGKLGTLE F+RQADNLR QT QQM R+LTTRQSARALL Sbjct: 251 LGSSSSG--NVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTYQQMVRLLTTRQSARALL 308 Query: 278 VISDYXXXXXXXXXXXXXRPKE 213 + +Y RP+E Sbjct: 309 AVHNYTLRLRALSSLWLARPRE 330
>TGA4_ARATH (Q39162) Transcription factor TGA4 (Ocs element-binding factor 4)| (OBF4) (AtbZIP57) Length = 364 Score = 130 bits (328), Expect = 3e-30 Identities = 70/125 (56%), Positives = 88/125 (70%) Frame = -1 Query: 638 GGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAXXX 459 GGFRPSELLK+L +PLT+QQL +CNL+QS QQAEDALSQGME LQ +LAE++A Sbjct: 229 GGFRPSELLKVLLPHFDPLTDQQLLDVCNLRQSCQQAEDALSQGMEKLQHTLAESVA--- 285 Query: 458 XXXXXXXXGNVANYMGQMAMAMGKLGTLENFLRQADNLRQQTLQQMQRILTTRQSARALL 279 +Y+ QM AM +L L +F+ QAD+LR +TLQQM RILTTRQ+AR LL Sbjct: 286 -----AGKLGEGSYIPQMTCAMERLEALVSFVNQADHLRHETLQQMHRILTTRQAARGLL 340 Query: 278 VISDY 264 + +Y Sbjct: 341 ALGEY 345
>TGA7_ARATH (Q93ZE2) Transcription factor TGA7 (AtbZIP50)| Length = 368 Score = 129 bits (323), Expect = 1e-29 Identities = 73/142 (51%), Positives = 91/142 (64%) Frame = -1 Query: 638 GGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAXXX 459 GGFRPSELL ++ L+PLT+QQ+ + NLQQSSQQAEDALSQG++ LQQSLAE++ Sbjct: 232 GGFRPSELLNVVMPYLQPLTDQQILEVRNLQQSSQQAEDALSQGIDKLQQSLAESIVIDA 291 Query: 458 XXXXXXXXGNVANYMGQMAMAMGKLGTLENFLRQADNLRQQTLQQMQRILTTRQSARALL 279 +Y MA A+ L LE F+ QAD+LRQQTLQQM +ILTTRQSAR LL Sbjct: 292 VIES-------THYPTHMAAAIENLQALEGFVNQADHLRQQTLQQMAKILTTRQSARGLL 344 Query: 278 VISDYXXXXXXXXXXXXXRPKE 213 + +Y RP+E Sbjct: 345 ALGEYLHRLRALSSLWAARPQE 366
>TGA3_ARATH (Q39234) Transcription factor TGA3 (AtbZIP22)| Length = 384 Score = 128 bits (321), Expect = 2e-29 Identities = 72/142 (50%), Positives = 91/142 (64%) Frame = -1 Query: 638 GGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAXXX 459 GGFRPSELL ++ +EPLT+QQL + NLQQSSQQAE+ALSQG++ LQQ L E++A Sbjct: 247 GGFRPSELLNVVMPYVEPLTDQQLLEVRNLQQSSQQAEEALSQGLDKLQQGLVESIAIQI 306 Query: 458 XXXXXXXXGNVANYMGQMAMAMGKLGTLENFLRQADNLRQQTLQQMQRILTTRQSARALL 279 N+ MA AM L LE+F+ QAD+LRQQTLQQM +ILTTRQ+AR LL Sbjct: 307 KVVES------VNHGAPMASAMENLQALESFVNQADHLRQQTLQQMSKILTTRQAARGLL 360 Query: 278 VISDYXXXXXXXXXXXXXRPKE 213 + +Y RP+E Sbjct: 361 ALGEYFHRLRALSSLWAARPRE 382
>TGA1_ARATH (Q39237) Transcription factor TGA1 (DNA-binding protein TGA1a-like| protein) (AtbZIP47) Length = 368 Score = 120 bits (302), Expect = 3e-27 Identities = 65/125 (52%), Positives = 86/125 (68%) Frame = -1 Query: 638 GGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAXXX 459 GGFRPS+LLK+L + LT+QQL +CNL+QS QQAEDAL+QGME LQ +LA+ +A Sbjct: 233 GGFRPSDLLKVLLPHFDVLTDQQLLDVCNLKQSCQQAEDALTQGMEKLQHTLADCVA--- 289 Query: 458 XXXXXXXXGNVANYMGQMAMAMGKLGTLENFLRQADNLRQQTLQQMQRILTTRQSARALL 279 +Y+ Q+ AM +L L +F+ QAD+LR +TLQQM RILTTRQ+AR LL Sbjct: 290 -----AGQLGEGSYIPQVNSAMDRLEALVSFVNQADHLRHETLQQMYRILTTRQAARGLL 344 Query: 278 VISDY 264 + +Y Sbjct: 345 ALGEY 349
>TGA1A_TOBAC (P14232) TGACG-sequence-specific DNA-binding protein TGA-1A (TGA1a)| (ASF-1 protein) Length = 359 Score = 118 bits (296), Expect = 1e-26 Identities = 70/126 (55%), Positives = 83/126 (65%), Gaps = 1/126 (0%) Frame = -1 Query: 638 GGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAXXX 459 GGFRPSELLK+L+ LE LTEQQL +CNL QS QQAEDALSQGM L Q LAE +A Sbjct: 223 GGFRPSELLKVLTPHLELLTEQQLREVCNLTQSCQQAEDALSQGMVKLHQILAEAVA--- 279 Query: 458 XXXXXXXXGNVANY-MGQMAMAMGKLGTLENFLRQADNLRQQTLQQMQRILTTRQSARAL 282 NY + QM A+ KL L F+ QAD+LRQ+TLQQM RIL T Q+A+ L Sbjct: 280 -----AGRLGEGNYTLPQMGPAIEKLEDLVRFVNQADHLRQETLQQMSRILNTCQAAQGL 334 Query: 281 LVISDY 264 L + +Y Sbjct: 335 LALGEY 340
>K1C12_RABIT (Q28706) Keratin, type I cytoskeletal 12 (Cytokeratin-12) (CK-12)| (Keratin-12) (K12) (Fragment) Length = 411 Score = 34.7 bits (78), Expect = 0.25 Identities = 34/122 (27%), Positives = 57/122 (46%) Frame = -1 Query: 629 RPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAXXXXXX 450 + EL K +ST E L + S + +L+++ Q E L Q A+++SL ++LA Sbjct: 242 KSGELRKEISTNTEQLQSSK-SEVTDLRRALQNLEIEL-QSQLAMKKSLEDSLAETE--- 296 Query: 449 XXXXXGNVANYMGQMAMAMGKLGTLENFLRQADNLRQQTLQQMQRILTTRQSARALLVIS 270 +Y GQ++ +G LE L+Q + ++ QR+L + AR L I Sbjct: 297 --------GDYCGQLSQVQQLVGDLEAQLQQVRSDTERQNMDYQRLLNVK--ARLELEIE 346 Query: 269 DY 264 Y Sbjct: 347 TY 348
>S39A4_HUMAN (Q6P5W5) Zinc transporter ZIP4 precursor (Solute carrier family 39| member 4) Length = 647 Score = 30.0 bits (66), Expect = 6.1 Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -1 Query: 596 QLEP-LTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETL 471 QL P L +QQLSG C QS +D LSQ L SLA L Sbjct: 295 QLSPALLQQQLSGACT-SQSRPPVQDQLSQSERYLYGSLATLL 336
>LIPA1_HUMAN (Q13136) Liprin-alpha-1 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-1) (PTPRF-interacting protein alpha-1) (LAR-interacting protein 1) (LIP.1) Length = 1202 Score = 29.6 bits (65), Expect = 7.9 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 3/99 (3%) Frame = -1 Query: 602 STQLEPLTEQQLSGICNLQQSSQQAEDA---LSQGMEALQQSLAETLAXXXXXXXXXXXG 432 +T + L ++ + I N +Q ED L + +E +Q L +TL Sbjct: 336 ATSVHDLNDKLENEIANKDSMHRQTEDKNRQLQERLELAEQKLQQTLRKAETLPEVEA-- 393 Query: 431 NVANYMGQMAMAMGKLGTLENFLRQADNLRQQTLQQMQR 315 +A + ++ A + G +E LRQ + ++ Q++QR Sbjct: 394 ELAQRVAALSKAEERHGNIEERLRQMEAQLEEKNQELQR 432 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,608,657 Number of Sequences: 219361 Number of extensions: 1735692 Number of successful extensions: 5312 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5295 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
