>RNH2_SYNJA (Q2JW45) Ribonuclease HII (EC 3.1.26.4) (RNase HII)|
          Length = 221

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
 Frame = +1

Query: 160 AFVSLPSLLSPTKFQTKTRRNACRQ--PPPRHHYCQSSPMQISGAAGIVRXXXXXXXXXX 333
           A V LP+ L P   +  +    C+Q  PP R H+ +    Q++ A GI            
Sbjct: 49  AAVILPAHLDP---EALSGVRDCKQLRPPQRAHWAERIA-QVALAVGI--GSASAAEIDQ 102

Query: 334 XDAERPALVAAERLLAQVHEGIHVVXQPLPAEGARTRSSAI 456
            +  +  L+A +R LAQV E  H++   LP     +R +A+
Sbjct: 103 LNIRQATLLAMQRALAQVGEVEHILLDGLPLAELGSRQTAL 143

>DCBD2_RAT (Q91ZV2) Discoidin, CUB and LCCL domain-containing protein 2|
           precursor (Endothelial and smooth muscle cell-derived
           neuropilin-like protein)
          Length = 769

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -1

Query: 530 RASLPGGLFSPLSPSRSGHGRPCQLMALLLVRAPSAGR----GCXTT 402
           RA LP   + PL P R+   RP +L+ LLL+  P AG     GC  T
Sbjct: 27  RAPLPSAGWCPLPPGRNSSSRP-RLLLLLLLLLPDAGAQKGDGCGHT 72

>MELB_KLEPN (Q02581) Melibiose carrier protein (Thiomethylgalactoside permease|
           II) (Melibiose permease) (Na+ (Li+)/melibiose symporter)
           (Melibiose transporter)
          Length = 471

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 616 R*RVHLRDPARREPEDDAHPERP 548
           R ++HL D  RR PE+D  PERP
Sbjct: 442 RIQIHLLDKYRRVPENDVEPERP 464

>DCBD2_MOUSE (Q91ZV3) Discoidin, CUB and LCCL domain-containing protein 2|
           precursor (Endothelial and smooth muscle cell-derived
           neuropilin-like protein)
          Length = 769

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -1

Query: 530 RASLPGGLFSPLSPSRSGHGRPCQLMALLLVRAPSAGR---GCXTT 402
           RA+LP     PL P R+   RP  L+ LLL+   + G+   GC  T
Sbjct: 27  RAALPSAGCCPLPPGRNSSSRPRLLLLLLLLLQDAGGQQGDGCGHT 72

>IL1AP_MACMU (P59822) Interleukin-1 receptor accessory protein precursor (IL-1|
           receptor accessory protein) (IL-1RAcP)
          Length = 570

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
 Frame = -3

Query: 606 YTCVIQHGANPRTTHILRGQTVEV---PKGV-------PSRRPIFTIEPIEE 481
           YTCV+ +  N RT H+ R  TV+V   PK         P+   ++  EP EE
Sbjct: 210 YTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEE 261

>IL1AP_HUMAN (Q9NPH3) Interleukin-1 receptor accessory protein precursor (IL-1|
           receptor accessory protein) (IL-1RAcP)
          Length = 570

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
 Frame = -3

Query: 606 YTCVIQHGANPRTTHILRGQTVEV---PKGV-------PSRRPIFTIEPIEE 481
           YTCV+ +  N RT H+ R  TV+V   PK         P+   ++  EP EE
Sbjct: 210 YTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEE 261

>IL1AP_RAT (Q63621) Interleukin-1 receptor accessory protein precursor (IL-1|
           receptor accessory protein) (IL-1RAcP)
          Length = 570

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
 Frame = -3

Query: 636 FVHCDCEDEEYTCVIQHGANPRTTHILRGQTVEV---PKGV-------PSRRPIFTIEPI 487
           F+     +  YTCV+ +  N R  H+ R  TV+V   PK         P+ R ++  EP 
Sbjct: 200 FIPLVSNNGNYTCVVTYLENGRLFHLTRTMTVKVVGSPKDAVPPHIYSPNDRVVYEKEPG 259

Query: 486 EE 481
           EE
Sbjct: 260 EE 261

>IL1AP_MOUSE (Q61730) Interleukin-1 receptor accessory protein precursor (IL-1|
           receptor accessory protein) (IL-1RAcP)
          Length = 570

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
 Frame = -3

Query: 636 FVHCDCEDEEYTCVIQHGANPRTTHILRGQTVEV---PKGV-------PSRRPIFTIEPI 487
           F+     +  YTCV+ +  N R  H+ R  TV+V   PK         P+ R ++  EP 
Sbjct: 200 FIPLVSNNGNYTCVVTYPENGRLFHLTRTVTVKVVGSPKDALPPQIYSPNDRVVYEKEPG 259

Query: 486 EE 481
           EE
Sbjct: 260 EE 261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,552,521
Number of Sequences: 219361
Number of extensions: 2086654
Number of successful extensions: 6250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6247
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)