Clone Information

BLAST Search Result

Clone Name	rbasd2e12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_191786.1\| Oryza sativa (japonica cultivar-group), predic...	90	1e-14
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	90	1e-14
3	dbj\|AP003453.3\| Oryza sativa (japonica cultivar-group) genomic D...	90	1e-14
4	dbj\|AK102023.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	1e-14
5	dbj\|AK073213.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	1e-14
6	dbj\|AK060700.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	1e-14
7	ref\|NM_196552.1\| Oryza sativa (japonica cultivar-group) unknown ...	48	0.036
8	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.036
9	gb\|AC025906.2\|AC025906 Oryza sativa (japonica cultivar-group) ch...	48	0.036
10	dbj\|AK109893.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.036
11	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	48	0.036
12	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.56
13	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.56
14	emb\|AL844878.4\|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb...	44	0.56
15	gb\|AY596534.1\| Saccharum officinarum clone SCJLLR1104A08, comple...	42	2.2
16	gb\|AC108870.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.2
17	gb\|AC128661.3\| Mus musculus BAC clone RP24-567N23 from chromosom...	42	2.2
18	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
19	gb\|AC012497.8\| Homo sapiens BAC clone RP11-349I7 from 2, complet...	42	2.2
20	gb\|AC084657.1\|CBRG46J11 Caenorhabditis briggsae cosmid G46J11, c...	42	2.2
21	gb\|AY072286.1\| Spodoptera frugiperda 60S acidic ribosomal protei...	42	2.2
22	emb\|BX950864.17\| Zebrafish DNA sequence from clone DKEY-158B13 i...	42	2.2
23	gb\|AY107714.1\| Zea mays PCO121192 mRNA sequence	42	2.2
24	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.2
25	gb\|AC147138.3\| Mus musculus BAC clone RP24-230H23 from 7, comple...	42	2.2
26	gb\|AC146616.3\| Mus musculus BAC clone RP23-9A18 from 7, complete...	42	2.2
27	gb\|AC109251.9\| Mus musculus chromosome 1, clone RP23-350B3, comp...	40	8.8
28	ref\|XM_482330.1\| Oryza sativa (japonica cultivar-group), mRNA	40	8.8
29	gb\|AY685219.1\| Spiranthes mosaic virus 2 polyprotein gene, parti...	40	8.8
30	gb\|DQ474300.1\| Uncultured ectomycorrhiza (Cenococcum geophilum) ...	40	8.8
31	emb\|CR388124.15\| Zebrafish DNA sequence from clone CH211-72C8 in...	40	8.8
32	emb\|Z22174.1\|CEK01B6 Caenorhabditis elegans Cosmid K01B6, comple...	40	8.8
33	gb\|AC124502.4\| Mus musculus BAC clone RP23-414G6 from chromosome...	40	8.8
34	emb\|BX649269.11\| Zebrafish DNA sequence from clone CH211-195G14 ...	40	8.8
35	gb\|AE004298.1\| Vibrio cholerae O1 biovar eltor str. N16961 chrom...	40	8.8
36	emb\|AL365178.10\| Human DNA sequence from clone RP11-454L1 on chr...	40	8.8
37	emb\|AL354861.11\| Human DNA sequence from clone RP11-180I4 on chr...	40	8.8
38	emb\|CR555306.1\| Azoarcus sp. EbN1 complete genome	40	8.8
39	emb\|BX640412.1\| Bordetella pertussis strain Tohama I, complete g...	40	8.8
40	emb\|BX571859.1\| Photorhabdus luminescens subsp. laumondii TTO1 c...	40	8.8
41	gb\|AC093497.2\| Drosophila melanogaster 3L BAC RP98-1H12 (Roswell...	40	8.8
42	gb\|AC091209.3\| Drosophila melanogaster 3L BAC RP98-3G6 (Roswell ...	40	8.8
43	emb\|CR354426.9\| Zebrafish DNA sequence from clone DKEY-48G21 in ...	40	8.8
44	gb\|AC018499.3\| Homo sapiens chromosome 3 clone RP11-267L16 map 3...	40	8.8
45	gb\|AC018818.5\|AC018818 Homo sapiens chromosome 3 clone RP11-266E...	40	8.8
46	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	40	8.8
47	dbj\|AK099936.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.8
48	gb\|AY596297.1\| Haloarcula marismortui ATCC 43049 chromosome I, c...	40	8.8
49	gb\|AE003532.3\| Drosophila melanogaster chromosome 3L, section 53...	40	8.8
50	gb\|AC132115.2\| Mus musculus BAC clone RP24-146A13 from 1, comple...	40	8.8
51	gb\|M84006.1\|HALHSP70 Halobacterium marismortui heat shock protei...	40	8.8
52	emb\|AL591495.12\| Mouse DNA sequence from clone RP23-61O3 on chro...	40	8.8
53	gb\|AC018502.6\| Homo sapiens chromosome 3 clone RP11-327H17 map 3...	40	8.8
54	gb\|AC018495.5\| Homo sapiens chromosome 3 clone RP11-193K15 map 3...	40	8.8

>ref|NM_191786.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1353

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                       
Query: 521 gggacgcccttgggcacctccaccgtctggcctctcaggatgtgcgtcgtcctcgggttc 580
           ||||| ||||||  ||||||||  |||| | ||| ||| |||||||||||||||||||||
Sbjct: 953 gggacacccttgcacacctccagtgtctcgtctcccagaatgtgcgtcgtcctcgggttc 894

                                            
Query: 581 gcgccgtgctggatcacgcaggtgtactcttca 613
           | |||||||| |||||| |||||||||||||||
Sbjct: 893 gggccgtgctcgatcacacaggtgtactcttca 861



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                        
Query: 316  cacctcatcgatctcctcctcgacgcagaacgtccggcactcgtcgctgcagaacgcctt 375
            |||||| ||||||||||| |||| | ||  | ||| |||||||| ||||||||| |||||
Sbjct: 1155 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 1096

                                                                
Query: 376  ctcgcccaggtacatgaaggtatccatgtcgtctngcagcctcttcctgcag 427
            ||| ||||| |||||| || ||||| |||| |   |||||||||||||||||
Sbjct: 1095 ctctcccagatacatgtagatatccctgtcctgctgcagcctcttcctgcag 1044

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                            
Query: 521      gggacgcccttgggcacctccaccgtctggcctctcaggatgtgcgtcgtcctcgggttc 580
                ||||| ||||||  ||||||||  |||| | ||| ||| |||||||||||||||||||||
Sbjct: 29955661 gggacacccttgcacacctccagtgtctcgtctcccagaatgtgcgtcgtcctcgggttc 29955602

                                                 
Query: 581      gcgccgtgctggatcacgcaggtgtactcttca 613
                | |||||||| |||||| |||||||||||||||
Sbjct: 29955601 gggccgtgctcgatcacacaggtgtactcttca 29955569



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                            
Query: 316      cacctcatcgatctcctcctcgacgcagaacgtccggcactcgtcgctgcagaacgcctt 375
                |||||| ||||||||||| |||| | ||  | ||| |||||||| ||||||||| |||||
Sbjct: 29955969 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 29955910

                   
Query: 376      ctc 378
                |||
Sbjct: 29955909 ctc 29955907

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>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0480C01
          Length = 151100

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                          
Query: 521    gggacgcccttgggcacctccaccgtctggcctctcaggatgtgcgtcgtcctcgggttc 580
              ||||| ||||||  ||||||||  |||| | ||| ||| |||||||||||||||||||||
Sbjct: 100219 gggacacccttgcacacctccagtgtctcgtctcccagaatgtgcgtcgtcctcgggttc 100160

                                               
Query: 581    gcgccgtgctggatcacgcaggtgtactcttca 613
              | |||||||| |||||| |||||||||||||||
Sbjct: 100159 gggccgtgctcgatcacacaggtgtactcttca 100127



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                          
Query: 316    cacctcatcgatctcctcctcgacgcagaacgtccggcactcgtcgctgcagaacgcctt 375
              |||||| ||||||||||| |||| | ||  | ||| |||||||| ||||||||| |||||
Sbjct: 100527 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 100468

                 
Query: 376    ctc 378
              |||
Sbjct: 100467 ctc 100465

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>dbj|AK102023.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080J22, full
           insert sequence
          Length = 1285

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                       
Query: 521 gggacgcccttgggcacctccaccgtctggcctctcaggatgtgcgtcgtcctcgggttc 580
           ||||| ||||||  ||||||||  |||| | ||| ||| |||||||||||||||||||||
Sbjct: 741 gggacacccttgcacacctccagtgtctcgtctcccagaatgtgcgtcgtcctcgggttc 682

                                            
Query: 581 gcgccgtgctggatcacgcaggtgtactcttca 613
           | |||||||| |||||| |||||||||||||||
Sbjct: 681 gggccgtgctcgatcacacaggtgtactcttca 649



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                       
Query: 316 cacctcatcgatctcctcctcgacgcagaacgtccggcactcgtcgctgcagaacgcctt 375
           |||||| ||||||||||| |||| | ||  | ||| |||||||| ||||||||| |||||
Sbjct: 943 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 884

                                                               
Query: 376 ctcgcccaggtacatgaaggtatccatgtcgtctngcagcctcttcctgcag 427
           ||| ||||| |||||| || ||||| |||| |   |||||||||||||||||
Sbjct: 883 ctctcccagatacatgtagatatccctgtcctgctgcagcctcttcctgcag 832

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>dbj|AK073213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033014N20, full
           insert sequence
          Length = 1420

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                       
Query: 521 gggacgcccttgggcacctccaccgtctggcctctcaggatgtgcgtcgtcctcgggttc 580
           ||||| ||||||  ||||||||  |||| | ||| ||| |||||||||||||||||||||
Sbjct: 881 gggacacccttgcacacctccagtgtctcgtctcccagaatgtgcgtcgtcctcgggttc 822

                                            
Query: 581 gcgccgtgctggatcacgcaggtgtactcttca 613
           | |||||||| |||||| |||||||||||||||
Sbjct: 821 gggccgtgctcgatcacacaggtgtactcttca 789



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                        
Query: 316  cacctcatcgatctcctcctcgacgcagaacgtccggcactcgtcgctgcagaacgcctt 375
            |||||| ||||||||||| |||| | ||  | ||| |||||||| ||||||||| |||||
Sbjct: 1083 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 1024

                                                                
Query: 376  ctcgcccaggtacatgaaggtatccatgtcgtctngcagcctcttcctgcag 427
            ||| ||||| |||||| || ||||| |||| |   |||||||||||||||||
Sbjct: 1023 ctctcccagatacatgtagatatccctgtcctgctgcagcctcttcctgcag 972

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>dbj|AK060700.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F10, full
           insert sequence
          Length = 1352

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                       
Query: 521 gggacgcccttgggcacctccaccgtctggcctctcaggatgtgcgtcgtcctcgggttc 580
           ||||| ||||||  ||||||||  |||| | ||| ||| |||||||||||||||||||||
Sbjct: 791 gggacacccttgcacacctccagtgtctcgtctcccagaatgtgcgtcgtcctcgggttc 732

                                            
Query: 581 gcgccgtgctggatcacgcaggtgtactcttca 613
           | |||||||| |||||| |||||||||||||||
Sbjct: 731 gggccgtgctcgatcacacaggtgtactcttca 699



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                       
Query: 316 cacctcatcgatctcctcctcgacgcagaacgtccggcactcgtcgctgcagaacgcctt 375
           |||||| ||||||||||| |||| | ||  | ||| |||||||| ||||||||| |||||
Sbjct: 993 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 934

                                                               
Query: 376 ctcgcccaggtacatgaaggtatccatgtcgtctngcagcctcttcctgcag 427
           ||| ||||| |||||| || ||||| |||| |   |||||||||||||||||
Sbjct: 933 ctctcccagatacatgtagatatccctgtcctgctgcagcctcttcctgcag 882

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>ref|NM_196552.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0075H14.8), mRNA
          Length = 3408

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 559 gatgtgcgtcgtcctcgggttcgcgccgtgctggatcacgcaggtgta 606
           ||||||||||||||||||||| || ||| ||  ||| |||||||||||
Sbjct: 918 gatgtgcgtcgtcctcgggttggccccgcgcgcgatgacgcaggtgta 871

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                                
Query: 559      gatgtgcgtcgtcctcgggttcgcgccgtgctggatcacgcaggtgta 606
                ||||||||||||||||||||| || ||| ||  ||| |||||||||||
Sbjct: 14447711 gatgtgcgtcgtcctcgggttggccccgcgcgcgatgacgcaggtgta 14447758

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>gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0075H14,
             complete sequence
          Length = 155420

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 559   gatgtgcgtcgtcctcgggttcgcgccgtgctggatcacgcaggtgta 606
             ||||||||||||||||||||| || ||| ||  ||| |||||||||||
Sbjct: 62074 gatgtgcgtcgtcctcgggttggccccgcgcgcgatgacgcaggtgta 62121

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>dbj|AK109893.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E09, full
           insert sequence
          Length = 1615

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 559 gatgtgcgtcgtcctcgggttcgcgccgtgctggatcacgcaggtgta 606
           ||||||||||||||||||||| || ||| ||  ||| |||||||||||
Sbjct: 876 gatgtgcgtcgtcctcgggttggccccgcgcgcgatgacgcaggtgta 829

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                                
Query: 559      gatgtgcgtcgtcctcgggttcgcgccgtgctggatcacgcaggtgta 606
                ||||||||||||||||||||| || ||| ||  ||| |||||||||||
Sbjct: 14455953 gatgtgcgtcgtcctcgggttggccccgcgcgcgatgacgcaggtgta 14456000

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 565      cgtcgtcctcgggttcgcgccgtgct 590
                |||||| |||||||||||||||||||
Sbjct: 23751747 cgtcgtgctcgggttcgcgccgtgct 23751772

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 565      cgtcgtcctcgggttcgcgccgtgct 590
                |||||| |||||||||||||||||||
Sbjct: 23679946 cgtcgtgctcgggttcgcgccgtgct 23679971

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>emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb0036A19 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 128795

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 565  cgtcgtcctcgggttcgcgccgtgct 590
            |||||| |||||||||||||||||||
Sbjct: 3863 cgtcgtgctcgggttcgcgccgtgct 3838

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>gb|AY596534.1| Saccharum officinarum clone SCJLLR1104A08, complete sequence
          Length = 1065

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 349 ccggcactcgtcgctgcagaacgcc 373
           ||||||||| |||||||||||||||
Sbjct: 414 ccggcactcctcgctgcagaacgcc 390

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>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0682E05, complete sequence
          Length = 162223

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 349   ccggcactcgtcgctgcagaacgcc 373
             |||||| ||||||||||||||||||
Sbjct: 75435 ccggcagtcgtcgctgcagaacgcc 75411

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>gb|AC128661.3| Mus musculus BAC clone RP24-567N23 from chromosome 7, complete sequence
          Length = 151249

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 200   tccaaaccaaaacaagaagaa 220
             |||||||||||||||||||||
Sbjct: 94770 tccaaaccaaaacaagaagaa 94750

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 349      ccggcactcgtcgctgcagaacgcc 373
                |||||| ||||||||||||||||||
Sbjct: 25585388 ccggcagtcgtcgctgcagaacgcc 25585364

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>gb|AC012497.8| Homo sapiens BAC clone RP11-349I7 from 2, complete sequence
          Length = 212104

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 36   accattctaacaggcacaaaa 56
            |||||||||||||||||||||
Sbjct: 7135 accattctaacaggcacaaaa 7155

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>gb|AC084657.1|CBRG46J11 Caenorhabditis briggsae cosmid G46J11, complete sequence
          Length = 36926

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 441   cagaagcagcgccatcagctggcat 465
             |||||||||| ||||||||||||||
Sbjct: 26719 cagaagcagctccatcagctggcat 26695

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>gb|AY072286.1| Spodoptera frugiperda 60S acidic ribosomal protein P2 mRNA,
           complete cds
          Length = 430

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 446 gcagcgccatcagctggcatggacg 470
           ||||||||| |||||||||||||||
Sbjct: 272 gcagcgccaccagctggcatggacg 248

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>emb|BX950864.17| Zebrafish DNA sequence from clone DKEY-158B13 in linkage group 19,
             complete sequence
          Length = 185429

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 534   gcacctccaccgtctggcctctcaggatg 562
             |||||||||||||||| |||||| |||||
Sbjct: 37641 gcacctccaccgtctgtcctctccggatg 37613

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>gb|AY107714.1| Zea mays PCO121192 mRNA sequence
          Length = 742

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 349 ccggcactcgtcgctgcagaacgcc 373
           ||||||||| |||||||||||||||
Sbjct: 357 ccggcactcctcgctgcagaacgcc 333

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 349      ccggcactcgtcgctgcagaacgcc 373
                |||||| ||||||||||||||||||
Sbjct: 25904058 ccggcagtcgtcgctgcagaacgcc 25904034

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>gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, complete sequence
          Length = 189381

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 200    tccaaaccaaaacaagaagaa 220
              |||||||||||||||||||||
Sbjct: 188485 tccaaaccaaaacaagaagaa 188465

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>gb|AC146616.3| Mus musculus BAC clone RP23-9A18 from 7, complete sequence
          Length = 198813

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 200    tccaaaccaaaacaagaagaa 220
              |||||||||||||||||||||
Sbjct: 135103 tccaaaccaaaacaagaagaa 135123

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>gb|AC109251.9| Mus musculus chromosome 1, clone RP23-350B3, complete sequence
          Length = 188481

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 598   gcaggtgtactcttcatctt 617
             ||||||||||||||||||||
Sbjct: 82500 gcaggtgtactcttcatctt 82519

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>ref|XM_482330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1113

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 361 gctgcagaacgccttctcgcccaggtacatgaaggt 396
           ||||||||||||| | ||||||  ||||||||||||
Sbjct: 664 gctgcagaacgccgtgtcgcccttgtacatgaaggt 629

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>gb|AY685219.1| Spiranthes mosaic virus 2 polyprotein gene, partial cds
          Length = 1630

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 607 ctcttcatcttcacaatcac 626
           ||||||||||||||||||||
Sbjct: 552 ctcttcatcttcacaatcac 533

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>gb|DQ474300.1| Uncultured ectomycorrhiza (Cenococcum geophilum) clone SWUBC100 18S
           ribosomal RNA gene, partial sequence; internal
           transcribed spacer 1, complete sequence; and 5.8S
           ribosomal RNA gene, partial sequence
          Length = 829

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 390 tgaaggtatccatgtcgtct 409
           ||||||||||||||||||||
Sbjct: 263 tgaaggtatccatgtcgtct 244

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>emb|CR388124.15| Zebrafish DNA sequence from clone CH211-72C8 in linkage group 15,
            complete sequence
          Length = 173535

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 437  gaaccagaagcagcgccatc 456
            ||||||||||||||||||||
Sbjct: 7296 gaaccagaagcagcgccatc 7315

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>emb|Z22174.1|CEK01B6 Caenorhabditis elegans Cosmid K01B6, complete sequence
          Length = 34002

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    tggcacatcgatatttgagt 29
             ||||||||||||||||||||
Sbjct: 12895 tggcacatcgatatttgagt 12914

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>gb|AC124502.4| Mus musculus BAC clone RP23-414G6 from chromosome 19, complete sequence
          Length = 219212

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   aaaccaaaacaagaagaaac 222
             ||||||||||||||||||||
Sbjct: 44930 aaaccaaaacaagaagaaac 44949

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>emb|BX649269.11| Zebrafish DNA sequence from clone CH211-195G14 in linkage group 13,
             complete sequence
          Length = 141533

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 610   ttcatcttcacaatcacaat 629
             ||||||||||||||||||||
Sbjct: 19957 ttcatcttcacaatcacaat 19938

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>gb|AE004298.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 206
            of 251 of the complete chromosome
          Length = 11695

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 488  atgggctcaatggtgaaaat 507
            ||||||||||||||||||||
Sbjct: 1830 atgggctcaatggtgaaaat 1811

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>emb|AL365178.10| Human DNA sequence from clone RP11-454L1 on chromosome 1 Contains the
             3' end of the CR1L gene for complement component (3b/4b)
             receptor 1-like and the 5' end of the MCP gene for
             membrane cofactor protein (CD46, trophoblast-lymphocyte
             cross-reactive antigen), complete sequence
          Length = 71858

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 19    gatatttgagtatttccaccattctaac 46
             ||||||||||||| |||||| |||||||
Sbjct: 12015 gatatttgagtatctccacccttctaac 12042

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>emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chromosome 9 Contains an
              alpha type 7 proteasome subunit (PSMA7) pseudogene, the 3'
              end of a novel gene, a novel gene and a CpG island,
              complete sequence
          Length = 182653

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 609    cttcatcttcacaatcacaa 628
              ||||||||||||||||||||
Sbjct: 153670 cttcatcttcacaatcacaa 153689

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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 363     tgcagaacgccttctcgccc 382
               ||||||||||||||||||||
Sbjct: 1118562 tgcagaacgccttctcgccc 1118581

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>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 444    aagcagcgccatcagctggc 463
              ||||||||||||||||||||
Sbjct: 124590 aagcagcgccatcagctggc 124571

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>emb|BX571859.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
             1/17
          Length = 349483

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   acaccggctaaatcaaaacc 125
             ||||||||||||||||||||
Sbjct: 83093 acaccggctaaatcaaaacc 83074

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>gb|AC093497.2| Drosophila melanogaster 3L BAC RP98-1H12 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170071

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     aagggaatacccaatgccca 74
              ||||||||||||||||||||
Sbjct: 132687 aagggaatacccaatgccca 132706

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>gb|AC091209.3| Drosophila melanogaster 3L BAC RP98-3G6 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 194979

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    aagggaatacccaatgccca 74
             ||||||||||||||||||||
Sbjct: 45220 aagggaatacccaatgccca 45239

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>emb|CR354426.9| Zebrafish DNA sequence from clone DKEY-48G21 in linkage group 1,
             complete sequence
          Length = 196432

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 437   gaaccagaagcagcgccatc 456
             ||||||||||||||||||||
Sbjct: 29238 gaaccagaagcagcgccatc 29257

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>gb|AC018499.3| Homo sapiens chromosome 3 clone RP11-267L16 map 3p, complete sequence
          Length = 198444

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  cctaccaagttccaaaccaa 209
            ||||||||||||||||||||
Sbjct: 1341 cctaccaagttccaaaccaa 1322

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>gb|AC018818.5|AC018818 Homo sapiens chromosome 3 clone RP11-266E23 map 3p, complete sequence
          Length = 156335

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    cctaccaagttccaaaccaa 209
              ||||||||||||||||||||
Sbjct: 148246 cctaccaagttccaaaccaa 148227

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 316     cacctcatcgatctcctcctcgac 339
               ||||||||||||||||| ||||||
Sbjct: 4127229 cacctcatcgatctcctgctcgac 4127206

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>dbj|AK099936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119L03, full
           insert sequence
          Length = 1113

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 361 gctgcagaacgccttctcgcccaggtacatgaaggt 396
           ||||||||||||| | ||||||  ||||||||||||
Sbjct: 664 gctgcagaacgccgtgtcgcccttgtacatgaaggt 629

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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 318     cctcatcgatctcctcctcg 337
               ||||||||||||||||||||
Sbjct: 2951280 cctcatcgatctcctcctcg 2951299

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>gb|AE003532.3| Drosophila melanogaster chromosome 3L, section 53 of 83 of the complete
              sequence
          Length = 295875

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     aagggaatacccaatgccca 74
              ||||||||||||||||||||
Sbjct: 105773 aagggaatacccaatgccca 105792

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>gb|AC132115.2| Mus musculus BAC clone RP24-146A13 from 1, complete sequence
          Length = 192659

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 598    gcaggtgtactcttcatctt 617
              ||||||||||||||||||||
Sbjct: 126890 gcaggtgtactcttcatctt 126871

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>gb|M84006.1|HALHSP70 Halobacterium marismortui heat shock protein 70 (HSP70) gene,
            complete cds
          Length = 2315

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 318  cctcatcgatctcctcctcg 337
            ||||||||||||||||||||
Sbjct: 1597 cctcatcgatctcctcctcg 1578

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>emb|AL591495.12| Mouse DNA sequence from clone RP23-61O3 on chromosome 2, complete
             sequence
          Length = 239758

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   ctcttcctgcagaaggagca 435
             ||||||||||||||||||||
Sbjct: 96342 ctcttcctgcagaaggagca 96361

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>gb|AC018502.6| Homo sapiens chromosome 3 clone RP11-327H17 map 3p, complete sequence
          Length = 198459

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  cctaccaagttccaaaccaa 209
            ||||||||||||||||||||
Sbjct: 1345 cctaccaagttccaaaccaa 1326

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>gb|AC018495.5| Homo sapiens chromosome 3 clone RP11-193K15 map 3p, complete sequence
          Length = 173592

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   cctaccaagttccaaaccaa 209
             ||||||||||||||||||||
Sbjct: 21867 cctaccaagttccaaaccaa 21886


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,120,217
Number of Sequences: 3902068
Number of extensions: 5120217
Number of successful extensions: 101261
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100851
Number of HSP's gapped (non-prelim): 410
length of query: 644
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 621
effective length of database: 17,143,297,704
effective search space: 10645987874184
effective search space used: 10645987874184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result