ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR847563.12| Zebrafish DNA sequence from clone CH211-202H14 ... 42 0.72
2emb|BX957253.12| Zebrafish DNA sequence from clone DKEY-234L14 i... 40 2.9
3gb|AC138449.10| Medicago truncatula clone mth2-14o23, complete s... 40 2.9
4gb|AC149206.2| Medicago truncatula chromosome 2 BAC clone mte1-4... 40 2.9
5emb|CR391908.15| Zebrafish DNA sequence from clone DKEY-225E11 i... 40 2.9
6emb|BX897668.12| Zebrafish DNA sequence from clone CH211-13H4 in... 40 2.9
7emb|AL954657.14| Zebrafish DNA sequence from clone CH211-223E21 ... 40 2.9

>emb|CR847563.12| Zebrafish DNA sequence from clone CH211-202H14 in linkage group 11,
              complete sequence
          Length = 204337

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     cgtttggtcatacagtagtta 49
              |||||||||||||||||||||
Sbjct: 107067 cgtttggtcatacagtagtta 107047



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>emb|BX957253.12| Zebrafish DNA sequence from clone DKEY-234L14 in linkage group 7,
              complete sequence
          Length = 197310

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 76     actcttaacaaacagtacatttta 99
              ||||||||||||||| ||||||||
Sbjct: 103041 actcttaacaaacagaacatttta 103064



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>gb|AC138449.10| Medicago truncatula clone mth2-14o23, complete sequence
          Length = 30085

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ttttatctaagttctgatgt 114
           ||||||||||||||||||||
Sbjct: 33  ttttatctaagttctgatgt 52



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>gb|AC149206.2| Medicago truncatula chromosome 2 BAC clone mte1-49n15, complete
             sequence
          Length = 113539

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ttttatctaagttctgatgt 114
             ||||||||||||||||||||
Sbjct: 13604 ttttatctaagttctgatgt 13585



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>emb|CR391908.15| Zebrafish DNA sequence from clone DKEY-225E11 in linkage group 19,
             complete sequence
          Length = 171679

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 87    acagtacattttatctaagttctg 110
             |||||||||||||||| |||||||
Sbjct: 98523 acagtacattttatcttagttctg 98546



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>emb|BX897668.12| Zebrafish DNA sequence from clone CH211-13H4 in linkage group 4,
             complete sequence
          Length = 42562

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 32    ttggtcatacagtagttagcatac 55
             ||||||| ||||||||||||||||
Sbjct: 20667 ttggtcagacagtagttagcatac 20644



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>emb|AL954657.14| Zebrafish DNA sequence from clone CH211-223E21 in linkage group 4,
             complete sequence
          Length = 200352

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 32    ttggtcatacagtagttagcatac 55
             ||||||| ||||||||||||||||
Sbjct: 19521 ttggtcagacagtagttagcatac 19498


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,253,641
Number of Sequences: 3902068
Number of extensions: 1253641
Number of successful extensions: 78562
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78550
Number of HSP's gapped (non-prelim): 12
length of query: 224
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 202
effective length of database: 17,147,199,772
effective search space: 3463734353944
effective search space used: 3463734353944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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