ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017684.1| Zea mays clone EL01N0443H09.c mRNA sequence 48 0.016
2gb|BT008914.1| Triticum aestivum clone wpa1c.pk002.f9:fis, full ... 48 0.016
3gb|AY103727.1| Zea mays PCO082317 mRNA sequence 48 0.016
4ref|XM_467124.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.99
5emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 0.99
6gb|AC105316.5| Homo sapiens BAC clone RP11-524B5 from 4, complet... 42 0.99
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.99
8dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.99
9dbj|AK066420.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.99
10dbj|AK062239.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.99
11emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 42 0.99
12gb|AC009256.9| Drosophila melanogaster clone BACR03G18, complete... 40 3.9
13gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 3.9
14gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 3.9
15gb|AE003501.4| Drosophila melanogaster chromosome X, section 53 ... 40 3.9
16gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 3.9
17gb|AC141428.4| Mus musculus BAC clone RP23-127I7 from 10, comple... 40 3.9 
>gb|BT017684.1| Zea mays clone EL01N0443H09.c mRNA sequence
          Length = 1401

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 198  cctactgctgggcgcactgcaccc 221
            ||||||||||||||||||||||||
Sbjct: 1161 cctactgctgggcgcactgcaccc 1138
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>gb|BT008914.1| Triticum aestivum clone wpa1c.pk002.f9:fis, full insert mRNA sequence
          Length = 1493

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 198  cctactgctgggcgcactgcaccc 221
            ||||||||||||||||||||||||
Sbjct: 1350 cctactgctgggcgcactgcaccc 1327
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>gb|AY103727.1| Zea mays PCO082317 mRNA sequence
          Length = 1504

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 198  cctactgctgggcgcactgcaccc 221
            ||||||||||||||||||||||||
Sbjct: 1320 cctactgctgggcgcactgcaccc 1297
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>ref|XM_467124.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1826

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 261  atgcttcttgccgcctttgatgctgcctgcgtctcat 297
            ||||||| |||||||| || ||||||||||| |||||
Sbjct: 1430 atgcttcctgccgcctgtgctgctgcctgcgcctcat 1394
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>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1320834

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 146     attaaacgggaaaggagcaatagta 170
               ||||||| |||||||||||||||||
Sbjct: 1158506 attaaacaggaaaggagcaatagta 1158530
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>gb|AC105316.5| Homo sapiens BAC clone RP11-524B5 from 4, complete sequence
          Length = 148571

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 62     aatgatacttatggctaacaa 82
              |||||||||||||||||||||
Sbjct: 116575 aatgatacttatggctaacaa 116555
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 261      atgcttcttgccgcctttgatgctgcctgcgtctcat 297
                ||||||| |||||||| || ||||||||||| |||||
Sbjct: 26541452 atgcttcctgccgcctgtgctgctgcctgcgcctcat 26541416
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>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519E06
          Length = 170634

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 261   atgcttcttgccgcctttgatgctgcctgcgtctcat 297
             ||||||| |||||||| || ||||||||||| |||||
Sbjct: 83833 atgcttcctgccgcctgtgctgctgcctgcgcctcat 83797
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>dbj|AK066420.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067J21, full
            insert sequence
          Length = 1824

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 261  atgcttcttgccgcctttgatgctgcctgcgtctcat 297
            ||||||| |||||||| || ||||||||||| |||||
Sbjct: 1428 atgcttcctgccgcctgtgctgctgcctgcgcctcat 1392
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>dbj|AK062239.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E06, full
            insert sequence
          Length = 1356

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 261  atgcttcttgccgcctttgatgctgcctgcgtctcat 297
            ||||||| |||||||| || ||||||||||| |||||
Sbjct: 1010 atgcttcctgccgcctgtgctgctgcctgcgcctcat 974
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 261    atgcttcttgccgcctttgatgctgcctgcgtctcat 297
              ||||||| |||||||| || ||||||||||| |||||
Sbjct: 247049 atgcttcctgccgcctgtgctgctgcctgcgcctcat 247013
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>gb|AC009256.9| Drosophila melanogaster clone BACR03G18, complete sequence
          Length = 179931

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   tactttaattaaacgggaaa 158
             ||||||||||||||||||||
Sbjct: 33725 tactttaattaaacgggaaa 33706
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 203     tgctgggcgcactgcacccnccttggg 229
               ||||||||||||||||||  |||||||
Sbjct: 2223239 tgctgggcgcactgcacctgccttggg 2223265
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 203     tgctgggcgcactgcacccnccttggg 229
               ||||||||||||||||||  |||||||
Sbjct: 2127985 tgctgggcgcactgcacctgccttggg 2128011
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>gb|AE003501.4| Drosophila melanogaster chromosome X, section 53 of 74 of the complete
             sequence
          Length = 323840

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   tactttaattaaacgggaaa 158
             ||||||||||||||||||||
Sbjct: 68799 tactttaattaaacgggaaa 68780
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 197    tcctactgctgggcgcactgcacc 220
              |||||| |||||||||||||||||
Sbjct: 442893 tcctacggctgggcgcactgcacc 442916
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>gb|AC141428.4| Mus musculus BAC clone RP23-127I7 from 10, complete sequence
          Length = 164381

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   aaaaggatgaatgatactta 72
            ||||||||||||||||||||
Sbjct: 5059 aaaaggatgaatgatactta 5078


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,028,152
Number of Sequences: 3902068
Number of extensions: 2028152
Number of successful extensions: 37850
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37787
Number of HSP's gapped (non-prelim): 63
length of query: 297
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 275
effective length of database: 17,147,199,772
effective search space: 4715479937300
effective search space used: 4715479937300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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