ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106290.1| Zea mays PCO139213 mRNA sequence 100 1e-17
2ref|XM_472605.1| Oryza sativa (japonica cultivar-group), predic... 90 1e-14
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
4emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4,... 90 1e-14
5ref|XM_466211.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
6ref|XM_466210.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
8dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
9dbj|AK073875.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
10dbj|AK066869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
11ref|XM_472603.1| Oryza sativa (japonica cultivar-group), predic... 70 9e-09
12dbj|AK120173.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
13dbj|AK067590.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
14dbj|AK062183.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
15emb|X51781.1|RSSAG Rat mRNA for retina S-antigen 46 0.14
16emb|X15353.1|RNSAGMR Rat S-Ag mRNA for pineal S-antigen 46 0.14
17ref|NM_013023.2| Rattus norvegicus retinal S-antigen (Sag), mRNA 46 0.14
18gb|M60737.1|RATSANTI Rat S-antigen mRNA, complete cds 46 0.14
19gb|AC022008.4| Homo sapiens chromosome 3 clone RP11-63O1 map 3p,... 44 0.54
20gb|AC185244.2| Pan troglodytes BAC clone CH251-245L20 from chrom... 42 2.1
21gb|AC023480.7| Homo sapiens chromosome 3 clone RP11-399K19 map 3... 42 2.1
22gb|AC093655.4| Homo sapiens BAC clone RP11-424F6 from 7, complet... 42 2.1
23gb|AC073216.7| Homo sapiens BAC clone RP11-521C10 from 7, comple... 42 2.1
24emb|AL592307.36| Human DNA sequence from clone RP11-458D21 on ch... 42 2.1
25emb|AL596222.13| Human DNA sequence from clone RP11-114O18 on ch... 42 2.1
26emb|AL583856.6| Human DNA sequence from clone RP11-134K13 on chr... 42 2.1
27emb|AL139009.14| Human DNA sequence from clone RP5-976H8 on chro... 42 2.1
28emb|AL133376.6| Human DNA sequence from clone RP1-76K20 on chrom... 42 2.1
29gb|AC073493.27| Homo sapiens Xp BAC RP11-631N21 (Roswell Park Ca... 42 2.1
30emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 2.1
31gb|AC009659.5| Homo sapiens chromosome 11, clone RP11-362G8, com... 42 2.1
32gb|AC183687.3| Pan troglodytes BAC clone CH251-25N14 from chromo... 42 2.1
33gb|AC011492.8| Homo sapiens chromosome 19 clone CTB-187L3, compl... 42 2.1
34gb|AC106747.2| Homo sapiens chromosome 5 clone RP11-152C23, comp... 42 2.1
35gb|AC079603.11| Homo sapiens 12 BAC RP11-798I13 (Roswell Park Ca... 42 2.1
36gb|AC106822.3| Homo sapiens chromosome 5 clone RP11-772C9, compl... 42 2.1
37gb|AC092793.5| Homo sapiens 12p BAC RP11-74N9 (Roswell Park Canc... 42 2.1
38gb|AC098864.3| Homo sapiens BAC clone RP11-359L10 from 4, comple... 42 2.1
39gb|AC106792.2| Homo sapiens chromosome 5 clone RP11-403M22, comp... 42 2.1
40gb|AC099331.2| Homo sapiens chromosome 3 clone RP11-90B15, compl... 42 2.1
41gb|AC099557.2| Homo sapiens chromosome 3 clone RP11-613N24, comp... 42 2.1
42gb|AC106767.2| Homo sapiens chromosome 5 clone RP11-269M17, comp... 42 2.1
43gb|AC016146.18| Homo sapiens 3 BAC RP11-327M20 (Roswell Park Can... 42 2.1
44gb|AD000091.1|CH19F15314 Homo sapiens DNA from chromosome 19p13.... 42 2.1
45gb|AC022431.6| Homo sapiens chromosome 5 clone CTD-2583B1, compl... 42 2.1
46gb|AC009910.5|AC009910 Drosophila melanogaster, chromosome 2L, r... 42 2.1
47gb|AC018503.6|AC018503 Homo sapiens chromosome 3 clone RP11-41L1... 42 2.1
48gb|AC073065.6| Homo sapiens BAC clone RP11-149O3 from 2, complet... 42 2.1
49gb|AC007024.4|AC007024 Homo sapiens PAC clone RP4-664A21 from 7p... 42 2.1
50gb|AC026205.6|AC026205 Homo sapiens chromosome 3 clone RP11-61I9... 42 2.1
51gb|AC024159.4|AC024159 Homo sapiens chromosome 3 clone RP11-255K... 42 2.1
52gb|AC008940.3|AC008940 Homo sapiens chromosome 5 clone CTD-2319M... 42 2.1
53gb|AE003610.3| Drosophila melanogaster chromosome 2L, section 19... 42 2.1
54gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 2.1
55gb|AC004721.1|AC004721 Drosophila melanogaster DNA sequence (P1 ... 42 2.1
56emb|AL662966.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 2.1
57gb|AC026167.5| Homo sapiens chromosome 3 clone RP11-140B10 map 3... 42 2.1
58gb|AC117439.5| Homo sapiens 3 BAC RP11-183P11 (Roswell Park Canc... 42 2.1
59gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
60ref|XM_607870.2| PREDICTED: Bos taurus similar to family with se... 40 8.4
61gb|AC098885.3| Mus musculus BAC clone RP23-122L17 from 5, comple... 40 8.4
62gb|AC100383.12| Mus musculus chromosome 6, clone RP23-132E3, com... 40 8.4
63emb|CR954985.1| Human DNA sequence from clone XX-HCC1954_35K08, ... 40 8.4
64gb|AC131886.5| Rattus norvegicus 4 BAC CH230-53A1 (Children's Ho... 40 8.4
65emb|CR378676.1| Photobacterium profundum SS9 chromosome 2; segme... 40 8.4
66emb|CR394529.7| Zebrafish DNA sequence from clone CH211-121F17 i... 40 8.4
67emb|BX005068.13| Zebrafish DNA sequence from clone DKEY-40H17 in... 40 8.4
68gb|AC087491.5| Homo sapiens chromosome 17, clone RP11-62N23, com... 40 8.4
69gb|AF435975.1| Homo sapiens dopamine- and cAMP-regulated neurona... 40 8.4
70gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 8.4
71gb|AF323029.1|AF323029 Sphingomonas capsulata aminopeptidase pre... 40 8.4
72dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
73dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
74dbj|AP006177.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
75gb|AC100746.4| Mus musculus chromosome 5, clone RP24-399G21, com... 40 8.4
76gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4 
>gb|AY106290.1| Zea mays PCO139213 mRNA sequence
          Length = 908

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 119/142 (83%)
 Strand = Plus / Minus

                                                                       
Query: 449 gcgccgacgcggcgtagagctgcgtccgccagcttctggcccttggcaccgctgcccccg 508
           ||||||| |||||| |  || ||||||||||||||||||||||||| ||| ||||| || 
Sbjct: 823 gcgccgatgcggcgcaatgcagcgtccgccagcttctggcccttgggaccactgccacct 764

                                                                       
Query: 509 agaacgacgccacggaaggcgcagtggacagcccgggagaccttcttgaagacgacatcg 568
           |  | || ||||||||||||||||| ||| || ||||| |||||||||||||| || || 
Sbjct: 763 aagatgatgccacggaaggcgcagtagaccgcacgggataccttcttgaagaccacgtca 704

                                 
Query: 569 tcggcttggaggctcttgagga 590
            |||  ||||||||||||||||
Sbjct: 703 ccgggctggaggctcttgagga 682



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 368 gggccgtggaccttctccgagaccgtggccaccctgatgagcacttcggccgccttcacc 427
           ||||||||||||||||| || ||||| |||||| |||| ||||| || || ||||||| |
Sbjct: 905 gggccgtggaccttctctgataccgttgccaccttgatcagcacctcagcagccttcaac 846

               
Query: 428 accc 431
           ||||
Sbjct: 845 accc 842
to top
>ref|XM_472605.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2415

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 129/157 (82%)
 Strand = Plus / Minus

                                                                        
Query: 437  gcgagcttcgccgcgccgacgcggcgtagagctgcgtccgccagcttctggcccttggca 496
            ||||||||||||||| ||| ||| || || |  || || |||||||||| ||||||| | 
Sbjct: 2321 gcgagcttcgccgcggcgaggcgtcgcagcggcgcttcggccagcttcttgcccttgacg 2262

                                                                        
Query: 497  ccgctgcccccgagaacgacgccacggaaggcgcagtggacagcccgggagaccttcttg 556
            |||| ||| ||||| |||||||| ||||| ||||||| ||| |  ||||| |||||   |
Sbjct: 2261 ccgccgccgccgaggacgacgccgcggaacgcgcagtagaccgtacgggacaccttgccg 2202

                                                 
Query: 557  aagacgacatcgtcggcttggaggctcttgaggagca 593
            |||||||| ||| |||| |||||||||||||||||||
Sbjct: 2201 aagacgacgtcgccggcctggaggctcttgaggagca 2165
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 129/157 (82%)
 Strand = Plus / Minus

                                                                            
Query: 437      gcgagcttcgccgcgccgacgcggcgtagagctgcgtccgccagcttctggcccttggca 496
                ||||||||||||||| ||| ||| || || |  || || |||||||||| ||||||| | 
Sbjct: 21864566 gcgagcttcgccgcggcgaggcgtcgcagcggcgcttcggccagcttcttgcccttgacg 21864507

                                                                            
Query: 497      ccgctgcccccgagaacgacgccacggaaggcgcagtggacagcccgggagaccttcttg 556
                |||| ||| ||||| |||||||| ||||| ||||||| ||| |  ||||| |||||   |
Sbjct: 21864506 ccgccgccgccgaggacgacgccgcggaacgcgcagtagaccgtacgggacaccttgccg 21864447

                                                     
Query: 557      aagacgacatcgtcggcttggaggctcttgaggagca 593
                |||||||| ||| |||| |||||||||||||||||||
Sbjct: 21864446 aagacgacgtcgccggcctggaggctcttgaggagca 21864410



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 127/157 (80%), Gaps = 3/157 (1%)
 Strand = Plus / Minus

                                                                            
Query: 437      gcgagcttcgccgcgccgacgcggcgtagagctgcgtccgccagcttctggcccttggca 496
                ||||||||||||||||||| ||| || || |  || || || ||||||| ||||||||| 
Sbjct: 21856019 gcgagcttcgccgcgccgaggcgtcgcagcggcgcttcggctagcttcttgcccttggcg 21855960

                                                                            
Query: 497      ccgctgcccccgagaacgacgccacggaaggcgcagtggacagcccgggagaccttcttg 556
                ||||   | ||||| |||||||| ||||||||  ||| ||| |||||||| |||||   |
Sbjct: 21855959 ccgc---caccgaggacgacgccgcggaaggcaaagtagaccgcccgggacaccttaccg 21855903

                                                     
Query: 557      aagacgacatcgtcggcttggaggctcttgaggagca 593
                |||||||  ||| |||| |||||||||||||| ||||
Sbjct: 21855902 aagacgatgtcgccggcctggaggctcttgagaagca 21855866



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 430      ccggccagcgagcttcgccgcgccg 454
                ||||||||||||||| |||||||||
Sbjct: 13308622 ccggccagcgagcttagccgcgccg 13308646
to top
>emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000114_01,
             complete sequence
          Length = 127713

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 129/157 (82%)
 Strand = Plus / Minus

                                                                         
Query: 437   gcgagcttcgccgcgccgacgcggcgtagagctgcgtccgccagcttctggcccttggca 496
             ||||||||||||||| ||| ||| || || |  || || |||||||||| ||||||| | 
Sbjct: 49167 gcgagcttcgccgcggcgaggcgtcgcagcggcgcttcggccagcttcttgcccttgacg 49108

                                                                         
Query: 497   ccgctgcccccgagaacgacgccacggaaggcgcagtggacagcccgggagaccttcttg 556
             |||| ||| ||||| |||||||| ||||| ||||||| ||| |  ||||| |||||   |
Sbjct: 49107 ccgccgccgccgaggacgacgccgcggaacgcgcagtagaccgtacgggacaccttgccg 49048

                                                  
Query: 557   aagacgacatcgtcggcttggaggctcttgaggagca 593
             |||||||| ||| |||| |||||||||||||||||||
Sbjct: 49047 aagacgacgtcgccggcctggaggctcttgaggagca 49011



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 127/157 (80%), Gaps = 3/157 (1%)
 Strand = Plus / Minus

                                                                         
Query: 437   gcgagcttcgccgcgccgacgcggcgtagagctgcgtccgccagcttctggcccttggca 496
             ||||||||||||||||||| ||| || || |  || || || ||||||| ||||||||| 
Sbjct: 40620 gcgagcttcgccgcgccgaggcgtcgcagcggcgcttcggctagcttcttgcccttggcg 40561

                                                                         
Query: 497   ccgctgcccccgagaacgacgccacggaaggcgcagtggacagcccgggagaccttcttg 556
             ||||   | ||||| |||||||| ||||||||  ||| ||| |||||||| |||||   |
Sbjct: 40560 ccgc---caccgaggacgacgccgcggaaggcaaagtagaccgcccgggacaccttaccg 40504

                                                  
Query: 557   aagacgacatcgtcggcttggaggctcttgaggagca 593
             |||||||  ||| |||| |||||||||||||| ||||
Sbjct: 40503 aagacgatgtcgccggcctggaggctcttgagaagca 40467
to top
>ref|XM_466211.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2580

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                        
Query: 399  ccctgatgagcacttcggccgccttcaccacccggccagcgagcttcgccgcgccgacgc 458
            |||||||||| | ||||||||   ||||||||||| | | |||||||| |||||||| ||
Sbjct: 2239 ccctgatgaggatttcggccgatctcaccacccggtcggtgagcttcgtcgcgccgatgc 2180

                                                                        
Query: 459  ggcgtagagctgcgtccgccagcttctggcccttggcaccgctgcccccgagaacgacgc 518
            | |  || || ||||| || |||||| | ||| ||||||||||||| |||||   ||   
Sbjct: 2179 gcctcagggcggcgtcggcgagcttccgtcccctggcaccgctgccaccgagggtgatcg 2120

                                                                        
Query: 519  cacggaaggcgcagtggacagcccgggagaccttcttgaagacgacatcgtcggcttgga 578
            | ||||| || |||| ||| | ||||||||||||||||||||||   || ||||  ||||
Sbjct: 2119 cgcggaacgcacagtagacggaccgggagaccttcttgaagacggggtcatcggtctgga 2060

                        
Query: 579  ggctcttgagga 590
            ||||||||||||
Sbjct: 2059 ggctcttgagga 2048
to top
>ref|XM_466210.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3911

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                        
Query: 399  ccctgatgagcacttcggccgccttcaccacccggccagcgagcttcgccgcgccgacgc 458
            |||||||||| | ||||||||   ||||||||||| | | |||||||| |||||||| ||
Sbjct: 3570 ccctgatgaggatttcggccgatctcaccacccggtcggtgagcttcgtcgcgccgatgc 3511

                                                                        
Query: 459  ggcgtagagctgcgtccgccagcttctggcccttggcaccgctgcccccgagaacgacgc 518
            | |  || || ||||| || |||||| | ||| ||||||||||||| |||||   ||   
Sbjct: 3510 gcctcagggcggcgtcggcgagcttccgtcccctggcaccgctgccaccgagggtgatcg 3451

                                                                        
Query: 519  cacggaaggcgcagtggacagcccgggagaccttcttgaagacgacatcgtcggcttgga 578
            | ||||| || |||| ||| | ||||||||||||||||||||||   || ||||  ||||
Sbjct: 3450 cgcggaacgcacagtagacggaccgggagaccttcttgaagacggggtcatcggtctgga 3391

                        
Query: 579  ggctcttgagga 590
            ||||||||||||
Sbjct: 3390 ggctcttgagga 3379
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                            
Query: 399      ccctgatgagcacttcggccgccttcaccacccggccagcgagcttcgccgcgccgacgc 458
                |||||||||| | ||||||||   ||||||||||| | | |||||||| |||||||| ||
Sbjct: 21079185 ccctgatgaggatttcggccgatctcaccacccggtcggtgagcttcgtcgcgccgatgc 21079126

                                                                            
Query: 459      ggcgtagagctgcgtccgccagcttctggcccttggcaccgctgcccccgagaacgacgc 518
                | |  || || ||||| || |||||| | ||| ||||||||||||| |||||   ||   
Sbjct: 21079125 gcctcagggcggcgtcggcgagcttccgtcccctggcaccgctgccaccgagggtgatcg 21079066

                                                                            
Query: 519      cacggaaggcgcagtggacagcccgggagaccttcttgaagacgacatcgtcggcttgga 578
                | ||||| || |||| ||| | ||||||||||||||||||||||   || ||||  ||||
Sbjct: 21079065 cgcggaacgcacagtagacggaccgggagaccttcttgaagacggggtcatcggtctgga 21079006

                            
Query: 579      ggctcttgagga 590
                ||||||||||||
Sbjct: 21079005 ggctcttgagga 21078994
to top
>dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_F08
          Length = 105979

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                         
Query: 399   ccctgatgagcacttcggccgccttcaccacccggccagcgagcttcgccgcgccgacgc 458
             |||||||||| | ||||||||   ||||||||||| | | |||||||| |||||||| ||
Sbjct: 80930 ccctgatgaggatttcggccgatctcaccacccggtcggtgagcttcgtcgcgccgatgc 80871

                                                                         
Query: 459   ggcgtagagctgcgtccgccagcttctggcccttggcaccgctgcccccgagaacgacgc 518
             | |  || || ||||| || |||||| | ||| ||||||||||||| |||||   ||   
Sbjct: 80870 gcctcagggcggcgtcggcgagcttccgtcccctggcaccgctgccaccgagggtgatcg 80811

                                                                         
Query: 519   cacggaaggcgcagtggacagcccgggagaccttcttgaagacgacatcgtcggcttgga 578
             | ||||| || |||| ||| | ||||||||||||||||||||||   || ||||  ||||
Sbjct: 80810 cgcggaacgcacagtagacggaccgggagaccttcttgaagacggggtcatcggtctgga 80751

                         
Query: 579   ggctcttgagga 590
             ||||||||||||
Sbjct: 80750 ggctcttgagga 80739
to top
>dbj|AK073875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074B12, full
            insert sequence
          Length = 3913

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                        
Query: 399  ccctgatgagcacttcggccgccttcaccacccggccagcgagcttcgccgcgccgacgc 458
            |||||||||| | ||||||||   ||||||||||| | | |||||||| |||||||| ||
Sbjct: 3572 ccctgatgaggatttcggccgatctcaccacccggtcggtgagcttcgtcgcgccgatgc 3513

                                                                        
Query: 459  ggcgtagagctgcgtccgccagcttctggcccttggcaccgctgcccccgagaacgacgc 518
            | |  || || ||||| || |||||| | ||| ||||||||||||| |||||   ||   
Sbjct: 3512 gcctcagggcggcgtcggcgagcttccgtcccctggcaccgctgccaccgagggtgatcg 3453

                                                                        
Query: 519  cacggaaggcgcagtggacagcccgggagaccttcttgaagacgacatcgtcggcttgga 578
            | ||||| || |||| ||| | ||||||||||||||||||||||   || ||||  ||||
Sbjct: 3452 cgcggaacgcacagtagacggaccgggagaccttcttgaagacggggtcatcggtctgga 3393

                        
Query: 579  ggctcttgagga 590
            ||||||||||||
Sbjct: 3392 ggctcttgagga 3381
to top
>dbj|AK066869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013083I21, full
            insert sequence
          Length = 2580

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                        
Query: 399  ccctgatgagcacttcggccgccttcaccacccggccagcgagcttcgccgcgccgacgc 458
            |||||||||| | ||||||||   ||||||||||| | | |||||||| |||||||| ||
Sbjct: 2239 ccctgatgaggatttcggccgatctcaccacccggtcggtgagcttcgtcgcgccgatgc 2180

                                                                        
Query: 459  ggcgtagagctgcgtccgccagcttctggcccttggcaccgctgcccccgagaacgacgc 518
            | |  || || ||||| || |||||| | ||| ||||||||||||| |||||   ||   
Sbjct: 2179 gcctcagggcggcgtcggcgagcttccgtcccctggcaccgctgccaccgagggtgatcg 2120

                                                                        
Query: 519  cacggaaggcgcagtggacagcccgggagaccttcttgaagacgacatcgtcggcttgga 578
            | ||||| || |||| ||| | ||||||||||||||||||||||   || ||||  ||||
Sbjct: 2119 cgcggaacgcacagtcgacggaccgggagaccttcttgaagacggggtcatcggtctgga 2060

                        
Query: 579  ggctcttgagga 590
            ||||||||||||
Sbjct: 2059 ggctcttgagga 2048
to top
>ref|XM_472603.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3342

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 127/157 (80%), Gaps = 3/157 (1%)
 Strand = Plus / Minus

                                                                        
Query: 437  gcgagcttcgccgcgccgacgcggcgtagagctgcgtccgccagcttctggcccttggca 496
            ||||||||||||||||||| ||| || || |  || || || ||||||| ||||||||| 
Sbjct: 3248 gcgagcttcgccgcgccgaggcgtcgcagcggcgcttcggctagcttcttgcccttggcg 3189

                                                                        
Query: 497  ccgctgcccccgagaacgacgccacggaaggcgcagtggacagcccgggagaccttcttg 556
            ||||   | ||||| |||||||| ||||||||  ||| ||| |||||||| |||||   |
Sbjct: 3188 ccgc---caccgaggacgacgccgcggaaggcaaagtagaccgcccgggacaccttaccg 3132

                                                 
Query: 557  aagacgacatcgtcggcttggaggctcttgaggagca 593
            |||||||  ||| |||| |||||||||||||| ||||
Sbjct: 3131 aagacgatgtcgccggcctggaggctcttgagaagca 3095
to top
>dbj|AK120173.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013032P11, full
            insert sequence
          Length = 3252

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 127/157 (80%), Gaps = 3/157 (1%)
 Strand = Plus / Minus

                                                                        
Query: 437  gcgagcttcgccgcgccgacgcggcgtagagctgcgtccgccagcttctggcccttggca 496
            ||||||||||||||||||| ||| || || |  || || || ||||||| ||||||||| 
Sbjct: 2838 gcgagcttcgccgcgccgaggcgtcgcagcggcgcttcggctagcttcttgcccttggcg 2779

                                                                        
Query: 497  ccgctgcccccgagaacgacgccacggaaggcgcagtggacagcccgggagaccttcttg 556
            ||||   | ||||| |||||||| ||||||||  ||| ||| |||||||| |||||   |
Sbjct: 2778 ccgc---caccgaggacgacgccgcggaaggcaaagtagaccgcccgggacaccttaccg 2722

                                                 
Query: 557  aagacgacatcgtcggcttggaggctcttgaggagca 593
            |||||||  ||| |||| |||||||||||||| ||||
Sbjct: 2721 aagacgatgtcgccggcctggaggctcttgagaagca 2685
to top
>dbj|AK067590.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112G22, full
            insert sequence
          Length = 2565

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 127/157 (80%), Gaps = 3/157 (1%)
 Strand = Plus / Minus

                                                                        
Query: 437  gcgagcttcgccgcgccgacgcggcgtagagctgcgtccgccagcttctggcccttggca 496
            ||||||||||||||||||| ||| || || |  || || || ||||||| ||||||||| 
Sbjct: 2106 gcgagcttcgccgcgccgaggcgtcgcagcggcgcttcggctagcttcttgcccttggcg 2047

                                                                        
Query: 497  ccgctgcccccgagaacgacgccacggaaggcgcagtggacagcccgggagaccttcttg 556
            ||||   | ||||| |||||||| ||||||||  ||| ||| |||||||| |||||   |
Sbjct: 2046 ccgc---caccgaggacgacgccgcggaaggcaaagtagaccgcccgggacaccttaccg 1990

                                                 
Query: 557  aagacgacatcgtcggcttggaggctcttgaggagca 593
            |||||||  ||| |||| |||||||||||||| ||||
Sbjct: 1989 aagacgatgtcgccggcctggaggctcttgagaagca 1953
to top
>dbj|AK062183.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-D12, full
            insert sequence
          Length = 2955

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 127/157 (80%), Gaps = 3/157 (1%)
 Strand = Plus / Minus

                                                                        
Query: 437  gcgagcttcgccgcgccgacgcggcgtagagctgcgtccgccagcttctggcccttggca 496
            ||||||||||||||||||| ||| || || |  || || || ||||||| ||||||||| 
Sbjct: 2564 gcgagcttcgccgcgccgaggcgtcgcagcggcgcttcggctagcttcttgcccttggcg 2505

                                                                        
Query: 497  ccgctgcccccgagaacgacgccacggaaggcgcagtggacagcccgggagaccttcttg 556
            ||||   | ||||| |||||||| ||||||||  ||| ||| |||||||| |||||   |
Sbjct: 2504 ccgc---caccgaggacgacgccgcggaaggcaaagtagaccgcccgggacaccttaccg 2448

                                                 
Query: 557  aagacgacatcgtcggcttggaggctcttgaggagca 593
            |||||||  ||| |||| |||||||||||||| ||||
Sbjct: 2447 aagacgatgtcgccggcctggaggctcttgagaagca 2411
to top
>emb|X51781.1|RSSAG Rat mRNA for retina S-antigen
          Length = 1482

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 540 cccgggagaccttcttgaagacgacat 566
           ||||||||||||||||||||| |||||
Sbjct: 194 cccgggagaccttcttgaagatgacat 168
to top
>emb|X15353.1|RNSAGMR Rat S-Ag mRNA for pineal S-antigen
          Length = 1367

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 540 cccgggagaccttcttgaagacgacat 566
           ||||||||||||||||||||| |||||
Sbjct: 85  cccgggagaccttcttgaagatgacat 59
to top
>ref|NM_013023.2| Rattus norvegicus retinal S-antigen (Sag), mRNA
          Length = 1482

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 540 cccgggagaccttcttgaagacgacat 566
           ||||||||||||||||||||| |||||
Sbjct: 194 cccgggagaccttcttgaagatgacat 168
to top
>gb|M60737.1|RATSANTI Rat S-antigen mRNA, complete cds
          Length = 1372

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 540 cccgggagaccttcttgaagacgacat 566
           ||||||||||||||||||||| |||||
Sbjct: 85  cccgggagaccttcttgaagatgacat 59
to top
>gb|AC022008.4| Homo sapiens chromosome 3 clone RP11-63O1 map 3p, complete sequence
          Length = 176051

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 175    ttctggagctgggacatccatatttg 200
              ||||||||||||||||||||| ||||
Sbjct: 105753 ttctggagctgggacatccatctttg 105778
to top
>gb|AC185244.2| Pan troglodytes BAC clone CH251-245L20 from chromosome 1, complete
              sequence
          Length = 140818

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 175    ttctggagctgggacatccat 195
              |||||||||||||||||||||
Sbjct: 124544 ttctggagctgggacatccat 124564
to top
>gb|AC023480.7| Homo sapiens chromosome 3 clone RP11-399K19 map 3p, complete sequence
          Length = 199814

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 175   ttctggagctgggacatccatattt 199
             |||||||||||||| ||||||||||
Sbjct: 47569 ttctggagctgggatatccatattt 47545
to top
>gb|AC093655.4| Homo sapiens BAC clone RP11-424F6 from 7, complete sequence
          Length = 119721

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 72924 ttctggagctgggacatccat 72904
to top
>gb|AC073216.7| Homo sapiens BAC clone RP11-521C10 from 7, complete sequence
          Length = 113530

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 66485 ttctggagctgggacatccat 66465
to top
>emb|AL592307.36| Human DNA sequence from clone RP11-458D21 on chromosome 1 Contains
            the gene for a novel protein similar to Notch homolog 2
            (Drosophila) NOTCH2, a novel gene and a CpG island,
            complete sequence
          Length = 204307

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 175  ttctggagctgggacatccat 195
            |||||||||||||||||||||
Sbjct: 3795 ttctggagctgggacatccat 3775
to top
>emb|AL596222.13| Human DNA sequence from clone RP11-114O18 on chromosome 1 Contains the
             5' end of the NOTCH2 gene for Notch homolog 2 (Drosophila)
             and a CpG island, complete sequence
          Length = 107056

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 50315 ttctggagctgggacatccat 50335
to top
>emb|AL583856.6| Human DNA sequence from clone RP11-134K13 on chromosome 6 Contains a
             novel gene, a spermine synthase (SMS) pseudogene and a CpG
             island, complete sequence
          Length = 79555

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 39534 ttctggagctgggacatccat 39554
to top
>emb|AL139009.14| Human DNA sequence from clone RP5-976H8 on chromosome 10p14-15.3,
             complete sequence
          Length = 172657

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 71375 ttctggagctgggacatccat 71355
to top
>emb|AL133376.6| Human DNA sequence from clone RP1-76K20 on chromosome 11p13-14.3
            Contains GSSs, complete sequence
          Length = 99228

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 175  ttctggagctgggacatccat 195
            |||||||||||||||||||||
Sbjct: 7021 ttctggagctgggacatccat 7001
to top
>gb|AC073493.27| Homo sapiens Xp BAC RP11-631N21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 211422

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 83735 ttctggagctgggacatccat 83755
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 405     tgagcacttcggccgccttca 425
               |||||||||||||||||||||
Sbjct: 2963058 tgagcacttcggccgccttca 2963038
to top
>gb|AC009659.5| Homo sapiens chromosome 11, clone RP11-362G8, complete sequence
          Length = 175372

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 23190 ttctggagctgggacatccat 23170
to top
>gb|AC183687.3| Pan troglodytes BAC clone CH251-25N14 from chromosome 1, complete
              sequence
          Length = 192054

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 175    ttctggagctgggacatccat 195
              |||||||||||||||||||||
Sbjct: 183069 ttctggagctgggacatccat 183049
to top
>gb|AC011492.8| Homo sapiens chromosome 19 clone CTB-187L3, complete sequence
          Length = 153064

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 175    ttctggagctgggacatccat 195
              |||||||||||||||||||||
Sbjct: 144819 ttctggagctgggacatccat 144799
to top
>gb|AC106747.2| Homo sapiens chromosome 5 clone RP11-152C23, complete sequence
          Length = 106038

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 98042 ttctggagctgggacatccat 98022
to top
>gb|AC079603.11| Homo sapiens 12 BAC RP11-798I13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 164837

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 55    gtagtatatatttacatcata 75
             |||||||||||||||||||||
Sbjct: 10454 gtagtatatatttacatcata 10474
to top
>gb|AC106822.3| Homo sapiens chromosome 5 clone RP11-772C9, complete sequence
          Length = 115988

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 175  ttctggagctgggacatccat 195
            |||||||||||||||||||||
Sbjct: 6565 ttctggagctgggacatccat 6545
to top
>gb|AC092793.5| Homo sapiens 12p BAC RP11-74N9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 76000

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 42019 ttctggagctgggacatccat 41999
to top
>gb|AC098864.3| Homo sapiens BAC clone RP11-359L10 from 4, complete sequence
          Length = 216280

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 25251 ttctggagctgggacatccat 25231
to top
>gb|AC106792.2| Homo sapiens chromosome 5 clone RP11-403M22, complete sequence
          Length = 84297

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 56449 ttctggagctgggacatccat 56469
to top
>gb|AC099331.2| Homo sapiens chromosome 3 clone RP11-90B15, complete sequence
          Length = 151498

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 65684 ttctggagctgggacatccat 65704
to top
>gb|AC099557.2| Homo sapiens chromosome 3 clone RP11-613N24, complete sequence
          Length = 196355

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 68858 ttctggagctgggacatccat 68838
to top
>gb|AC106767.2| Homo sapiens chromosome 5 clone RP11-269M17, complete sequence
          Length = 143792

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 175    ttctggagctgggacatccat 195
              |||||||||||||||||||||
Sbjct: 118025 ttctggagctgggacatccat 118005
to top
>gb|AC016146.18| Homo sapiens 3 BAC RP11-327M20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 190456

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 175    ttctggagctgggacatccatattt 199
              |||||||||||||| ||||||||||
Sbjct: 126983 ttctggagctgggatatccatattt 126959
to top
>gb|AD000091.1|CH19F15314 Homo sapiens DNA from chromosome 19p13.1 cosmid f15314, genomic
             sequence
          Length = 41369

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 16577 ttctggagctgggacatccat 16557
to top
>gb|AC022431.6| Homo sapiens chromosome 5 clone CTD-2583B1, complete sequence
          Length = 173698

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 180    gagctgggacatccatatttgccct 204
              |||||||||||||||| ||||||||
Sbjct: 155575 gagctgggacatccatctttgccct 155599
to top
>gb|AC009910.5|AC009910 Drosophila melanogaster, chromosome 2L, region 25D-25E, BAC clone
              BACR35L07, complete sequence
          Length = 193924

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 345    ttcaggcgagcgctttgtacc 365
              |||||||||||||||||||||
Sbjct: 154497 ttcaggcgagcgctttgtacc 154477
to top
>gb|AC018503.6|AC018503 Homo sapiens chromosome 3 clone RP11-41L18 map 3p, complete sequence
          Length = 191161

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 175    ttctggagctgggacatccatattt 199
              |||||||||||||| ||||||||||
Sbjct: 136230 ttctggagctgggatatccatattt 136254
to top
>gb|AC073065.6| Homo sapiens BAC clone RP11-149O3 from 2, complete sequence
          Length = 175345

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 175    ttctggagctgggacatccat 195
              |||||||||||||||||||||
Sbjct: 116025 ttctggagctgggacatccat 116005
to top
>gb|AC007024.4|AC007024 Homo sapiens PAC clone RP4-664A21 from 7p15, complete sequence
          Length = 83848

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 40628 ttctggagctgggacatccat 40648
to top
>gb|AC026205.6|AC026205 Homo sapiens chromosome 3 clone RP11-61I9 map 3p, complete sequence
          Length = 176669

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 75136 ttctggagctgggacatccat 75116
to top
>gb|AC024159.4|AC024159 Homo sapiens chromosome 3 clone RP11-255K15 map 3p, complete sequence
          Length = 195544

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 175    ttctggagctgggacatccat 195
              |||||||||||||||||||||
Sbjct: 142839 ttctggagctgggacatccat 142859
to top
>gb|AC008940.3|AC008940 Homo sapiens chromosome 5 clone CTD-2319M24, complete sequence
          Length = 131975

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 180  gagctgggacatccatatttgccct 204
            |||||||||||||||| ||||||||
Sbjct: 8725 gagctgggacatccatctttgccct 8749
to top
>gb|AE003610.3| Drosophila melanogaster chromosome 2L, section 19 of 83 of the complete
              sequence
          Length = 260249

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 345    ttcaggcgagcgctttgtacc 365
              |||||||||||||||||||||
Sbjct: 197604 ttcaggcgagcgctttgtacc 197584
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 442    cttcgccgcgccgacgcggcg 462
              |||||||||||||||||||||
Sbjct: 377221 cttcgccgcgccgacgcggcg 377241
to top
>gb|AC004721.1|AC004721 Drosophila melanogaster DNA sequence (P1 DS03308 (D285)), complete
             sequence
          Length = 80628

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   ttcaggcgagcgctttgtacc 365
             |||||||||||||||||||||
Sbjct: 14418 ttcaggcgagcgctttgtacc 14398
to top
>emb|AL662966.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035B13,
             complete sequence
          Length = 145234

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 430   ccggccagcgagcttcgccgcgccg 454
             ||||||||||||||| |||||||||
Sbjct: 80721 ccggccagcgagcttagccgcgccg 80745
to top
>gb|AC026167.5| Homo sapiens chromosome 3 clone RP11-140B10 map 3p, complete sequence
          Length = 188867

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 68559 ttctggagctgggacatccat 68579
to top
>gb|AC117439.5| Homo sapiens 3 BAC RP11-183P11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172676

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   ttctggagctgggacatccat 195
             |||||||||||||||||||||
Sbjct: 32740 ttctggagctgggacatccat 32760
to top
>gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome X clone
             OSJNBb0061I18, complete sequence
          Length = 143163

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   ccggccagcgagcttcgccg 449
             ||||||||||||||||||||
Sbjct: 71728 ccggccagcgagcttcgccg 71747
to top
>ref|XM_607870.2| PREDICTED: Bos taurus similar to family with sequence similarity
           40, member B (LOC529423), mRNA
          Length = 2421

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 534 ggacagcccgggagaccttc 553
           ||||||||||||||||||||
Sbjct: 674 ggacagcccgggagaccttc 693
to top
>gb|AC098885.3| Mus musculus BAC clone RP23-122L17 from 5, complete sequence
          Length = 211112

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     ttacacccaactcctcaaca 50
              ||||||||||||||||||||
Sbjct: 161524 ttacacccaactcctcaaca 161543
to top
>gb|AC100383.12| Mus musculus chromosome 6, clone RP23-132E3, complete sequence
          Length = 241050

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 59     tatatatttacatcatagacaattacta 86
              |||||||||| || ||||||||||||||
Sbjct: 139272 tatatatttaaatgatagacaattacta 139299
to top
>emb|CR954985.1| Human DNA sequence from clone XX-HCC1954_35K08, complete sequence
          Length = 164576

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 477    ccagcttctggcccttggcaccgc 500
              ||||| ||||||||||||||||||
Sbjct: 144595 ccagcctctggcccttggcaccgc 144618
to top
>gb|AC131886.5| Rattus norvegicus 4 BAC CH230-53A1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 222634

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     atatatttacatcatagaca 79
              ||||||||||||||||||||
Sbjct: 132467 atatatttacatcatagaca 132486
to top
>emb|CR378676.1| Photobacterium profundum SS9 chromosome 2; segment 2/7
          Length = 343529

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 80   attactaatcacattattga 99
            ||||||||||||||||||||
Sbjct: 8137 attactaatcacattattga 8118
to top
>emb|CR394529.7| Zebrafish DNA sequence from clone CH211-121F17 in linkage group 24,
             complete sequence
          Length = 75984

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    agacaattactaatcacattattg 98
             |||||||||| |||||||||||||
Sbjct: 73007 agacaattacaaatcacattattg 73030
to top
>emb|BX005068.13| Zebrafish DNA sequence from clone DKEY-40H17 in linkage group 1, complete
              sequence
          Length = 215007

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     atatatttacatcatagaca 79
              ||||||||||||||||||||
Sbjct: 211092 atatatttacatcatagaca 211073
to top
>gb|AC087491.5| Homo sapiens chromosome 17, clone RP11-62N23, complete sequence
          Length = 157216

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 477   ccagcttctggcccttggcaccgc 500
             ||||| ||||||||||||||||||
Sbjct: 48093 ccagcctctggcccttggcaccgc 48116
to top
>gb|AF435975.1| Homo sapiens dopamine- and cAMP-regulated neuronal phosphoprotein
            (PPP1R1B) gene, complete cds, alternatively spliced
          Length = 34765

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 477  ccagcttctggcccttggcaccgc 500
            ||||| ||||||||||||||||||
Sbjct: 2695 ccagcctctggcccttggcaccgc 2718
to top
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 405     tgagcacttcggccgccttc 424
               ||||||||||||||||||||
Sbjct: 1712664 tgagcacttcggccgccttc 1712683



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 471    cgtccgccagcttctggccc 490
              ||||||||||||||||||||
Sbjct: 240986 cgtccgccagcttctggccc 241005
to top
>gb|AF323029.1|AF323029 Sphingomonas capsulata aminopeptidase precursor, gene, partial cds
          Length = 1923

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 476 gccagcttctggcccttggc 495
           ||||||||||||||||||||
Sbjct: 281 gccagcttctggcccttggc 262
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 430      ccggccagcgagcttcgccg 449
                ||||||||||||||||||||
Sbjct: 12432447 ccggccagcgagcttcgccg 12432428
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 279      gacaagaatttacaaccgac 298
                ||||||||||||||||||||
Sbjct: 11909694 gacaagaatttacaaccgac 11909675
to top
>dbj|AP006177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0734C01
          Length = 163208

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   gacaagaatttacaaccgac 298
             ||||||||||||||||||||
Sbjct: 69049 gacaagaatttacaaccgac 69030
to top
>gb|AC100746.4| Mus musculus chromosome 5, clone RP24-399G21, complete sequence
          Length = 157682

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     ttacacccaactcctcaaca 50
              ||||||||||||||||||||
Sbjct: 148933 ttacacccaactcctcaaca 148914
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 430      ccggccagcgagcttcgccg 449
                ||||||||||||||||||||
Sbjct: 12439787 ccggccagcgagcttcgccg 12439768


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,443,826
Number of Sequences: 3902068
Number of extensions: 4443826
Number of successful extensions: 81193
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80642
Number of HSP's gapped (non-prelim): 535
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top