ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VGLB_EBV (P03188) Glycoprotein GP110 precursor (GP115) 29 3.5
2STC_DROME (P40798) Protein shuttle craft 28 7.8
3ELOV2_MOUSE (Q9JLJ4) Elongation of very long chain fatty acids p... 28 7.8

>VGLB_EBV (P03188) Glycoprotein GP110 precursor (GP115)|
          Length = 857

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +2

Query: 86  KGTKYVHYF---PGNILQWLVLTVRALLEHRNFTEIAQST 196
           KG + + YF    G +L WL LT R+L   +N TE+   T
Sbjct: 364 KGQEAITYFITSGGLLLAWLPLTPRSLATVKNLTELTTPT 403



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>STC_DROME (P40798) Protein shuttle craft|
          Length = 1106

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 79  NRKRNKICTLFSREHSSMACIDSTS 153
           NRK+N+ C   +REHS +A I   S
Sbjct: 906 NRKQNRSCQELAREHSRIATIQLAS 930



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>ELOV2_MOUSE (Q9JLJ4) Elongation of very long chain fatty acids protein 2|
          Length = 292

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
 Frame = +1

Query: 61  TIYFIYNRKRNKICTLFSREHSSMA----CIDSTSPFGTQKFY---RNSSIHI 198
           TI+F+  +K N+I  L    H+SM     C+ +  P G Q F+    NS IHI
Sbjct: 130 TIFFVLRKKTNQITFLHVYHHASMFNIWWCVLNWIPCG-QSFFGPTLNSFIHI 181


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,112,177
Number of Sequences: 219361
Number of extensions: 755976
Number of successful extensions: 1658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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