ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd2d22 |
|---|---|
| Clone Library Name | barley_pub |
>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 487 Score = 38.1 bits (87), Expect = 0.031 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Frame = -1 Query: 131 KKSLSPPPTEKSLAPLPA--RLKIGITMPFLPAPEKTGPPPLLPT 3 ++++ PPP++ S P+P+ R G P P P + GPPPL PT Sbjct: 266 REAVPPPPSQNSKPPVPSTPRPGAGSQAPPPPPPSRPGPPPLPPT 310
>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 493 Score = 35.4 bits (80), Expect = 0.20 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = -1 Query: 131 KKSLSPPPTEKSLAPLPARLKIGI---TMPFLPAPEKTGPPPLLP 6 ++++ PPP++ S P+P+ + G+ P P P + GPPPL P Sbjct: 271 REAVPPPPSQTSKPPVPSTPRPGLGSQAPPPPPPPSRPGPPPLPP 315
>FIP1_PONPY (Q5RAA7) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| Length = 588 Score = 35.4 bits (80), Expect = 0.20 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Frame = -1 Query: 179 PADFYSTLQKPIGLIKKKSLSPPPTEKSLAPL--PARLKIGITMPFLPAPEKTGPPPLLP 6 P F+ P L L PPPT + PL P + I + P P P PP L+P Sbjct: 341 PPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGAPPPSLIP 400 Query: 5 T 3 T Sbjct: 401 T 401
>FIP1_MOUSE (Q9D824) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| Length = 581 Score = 35.4 bits (80), Expect = 0.20 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Frame = -1 Query: 179 PADFYSTLQKPIGLIKKKSLSPPPTEKSLAPL--PARLKIGITMPFLPAPEKTGPPPLLP 6 P F+ P L L PPPT + PL P + I + P P P PP L+P Sbjct: 332 PPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGAPPPSLIP 391 Query: 5 T 3 T Sbjct: 392 T 392
>SNX41_CRYNE (Q5KKB9) Sorting nexin-41| Length = 638 Score = 33.5 bits (75), Expect = 0.78 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Frame = -1 Query: 155 QKPIGLIKKKSLSPPPTEKSLAPLPAR-LKIGITMPFLPAPEKTG 24 +KP L+ S SPPPT ++ P PAR K+G T+P P P KTG Sbjct: 30 RKPSSLVSAASGSPPPTHRASFPDPARHPKMGATVPG-PKP-KTG 72
>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 27.7 bits (60), Expect(2) = 1.1 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = -1 Query: 116 PPPTEKSLAPLPARLKIGITMPFLPAPEKTGPPPLLP 6 P PT + P+P + P P P +G PPL P Sbjct: 213 PVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNP 249 Score = 23.9 bits (50), Expect(2) = 1.1 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -2 Query: 241 VRPPLIFPLNANSGFPPTYVSPPIFIQP 158 V PP I P+ A PP PPI + P Sbjct: 185 VPPPPIPPIPAMPSLPPMPSIPPIPVPP 212
>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 27.7 bits (60), Expect(2) = 1.1 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = -1 Query: 116 PPPTEKSLAPLPARLKIGITMPFLPAPEKTGPPPLLP 6 P PT + P+P + P P P +G PPL P Sbjct: 213 PVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNP 249 Score = 23.9 bits (50), Expect(2) = 1.1 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -2 Query: 241 VRPPLIFPLNANSGFPPTYVSPPIFIQP 158 V PP I P+ A PP PPI + P Sbjct: 185 VPPPPIPPIPAMPSLPPMPSIPPIPVPP 212
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 32.7 bits (73), Expect = 1.3 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = -1 Query: 137 IKKKSLSPPPTEKSLAPLPARLKIGITM---PFLPAPEKTGPPPLLPT 3 I ++++ PPP + + P+P+ + + P P P + GPPPL P+ Sbjct: 277 IHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPS 324
>K1C9_HUMAN (P35527) Keratin, type I cytoskeletal 9 (Cytokeratin-9) (CK-9)| (Keratin-9) (K9) Length = 623 Score = 32.0 bits (71), Expect = 2.3 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = +1 Query: 7 GRSGGGPVFSGAGRNGMVIPIFSRAGRGANDFSVGGGERDFFLIKPIG 150 GR GGG S +G G + R G G+ +S GGG F +G Sbjct: 40 GRGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLG 87
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 32.0 bits (71), Expect = 2.3 Identities = 19/44 (43%), Positives = 20/44 (45%) Frame = +1 Query: 1 GVGRSGGGPVFSGAGRNGMVIPIFSRAGRGANDFSVGGGERDFF 132 G RS GP G GR G SR GRG +G GER F Sbjct: 289 GENRSLSGPDNRGRGRGGFDRGGMSRGGRGGGRGGLGAGERGGF 332
>FIP1_RAT (Q5U317) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| Length = 536 Score = 31.2 bits (69), Expect = 3.8 Identities = 20/59 (33%), Positives = 23/59 (38%) Frame = -1 Query: 179 PADFYSTLQKPIGLIKKKSLSPPPTEKSLAPLPARLKIGITMPFLPAPEKTGPPPLLPT 3 P F+ P L L PPPT + PL I P P P PP L+PT Sbjct: 296 PPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPL-------IPPPGFPPPPGAPPPSLIPT 347
>FIP1_HUMAN (Q6UN15) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| (Factor interacting with PAP) (hFip1) (Rearranged in hypereosinophilia) Length = 594 Score = 31.2 bits (69), Expect = 3.8 Identities = 20/59 (33%), Positives = 23/59 (38%) Frame = -1 Query: 179 PADFYSTLQKPIGLIKKKSLSPPPTEKSLAPLPARLKIGITMPFLPAPEKTGPPPLLPT 3 P F+ P L L PPPT + PL I P P P PP L+PT Sbjct: 356 PPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPL-------IPPPGFPPPPGAPPPSLIPT 407
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 30.8 bits (68), Expect = 5.0 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%) Frame = -1 Query: 122 LSPPPTEKSLAPLPARLKIGITM---PFLPAPEKT--GPPP 15 LSPPP E +PLP L + + P P PE++ PPP Sbjct: 467 LSPPPEELPASPLPEALHLSRPLEESPLSPPPEESPLSPPP 507
>FP1_MYTGA (Q27409) Adhesive plaque matrix protein precursor (Foot protein 1)| (MGFP1) (MGFP-1) Length = 751 Score = 25.0 bits (53), Expect(2) = 6.3 Identities = 15/42 (35%), Positives = 18/42 (42%) Frame = -1 Query: 131 KKSLSPPPTEKSLAPLPARLKIGITMPFLPAPEKTGPPPLLP 6 K +S PPT KS P K + P P+KT P P Sbjct: 220 KPKVSYPPTYKSKKSYPPIYKTKASYPSSYKPKKTYPSTYKP 261 Score = 23.9 bits (50), Expect(2) = 6.3 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%) Frame = -2 Query: 238 RPPLIFP--LNANSGFPPTYVSPPIFIQPFKSQS 143 +P L +P +PPTY P + +KS+S Sbjct: 160 KPKLTYPPTYKPKPSYPPTYKPKPSYPATYKSKS 193
>FIP1_BRARE (Q5XJD3) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| Length = 570 Score = 30.4 bits (67), Expect = 6.6 Identities = 18/65 (27%), Positives = 26/65 (40%) Frame = -1 Query: 197 PSHLRFPADFYSTLQKPIGLIKKKSLSPPPTEKSLAPLPARLKIGITMPFLPAPEKTGPP 18 P + P F+ P + L PP ++ P R+ I + P P P PP Sbjct: 323 PEVQKMPPPFFPPGPLPPNIPPPPFLPPPVSQAPPLIPPHRMPITVPPPNFPPPTGGPPP 382 Query: 17 PLLPT 3 L+PT Sbjct: 383 SLIPT 387
>JHD3B_HUMAN (O94953) JmjC domain-containing histone demethylation protein 3B| (EC 1.14.11.-) (Jumonji domain-containing protein 2B) Length = 1096 Score = 30.4 bits (67), Expect = 6.6 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Frame = -1 Query: 221 PSQR*LWLPSHLRFPADFYSTLQKPIGLIKKKSLSPPPTEKSLAPLPARLKIGITMPFLP 42 PS+ LWLPS L P L P P +PLPA L + P +P Sbjct: 474 PSEEALWLPSPLEPPV-----------------LGPGPAAMEESPLPAPL--NVVPPEVP 514 Query: 41 APE-KTGPPPLLP 6 + E + P P++P Sbjct: 515 SEELEAKPRPIIP 527
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 30.4 bits (67), Expect = 6.6 Identities = 19/48 (39%), Positives = 23/48 (47%) Frame = -1 Query: 149 PIGLIKKKSLSPPPTEKSLAPLPARLKIGITMPFLPAPEKTGPPPLLP 6 P G+ S PPP + P PA G + P LP P G PP+LP Sbjct: 539 PPGMPPSLSSGPPP----VLPPPALSSAG-SPPVLPPPALPGGPPILP 581
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 30.4 bits (67), Expect = 6.6 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Frame = -1 Query: 194 SHLRFPADFYSTLQK-PIGLIKKKSLSPPPTEKSLAPLPARLKIGITMPFLPAPEKTGPP 18 SH R P+ QK P +++S SPPP + +P P P LP PP Sbjct: 519 SHSRSPSPSPRKRQKEPSPRRRRRSPSPPPARRRRSPSPPPPPRRRRSPSLPRRRSPSPP 578 Query: 17 P 15 P Sbjct: 579 P 579
>DYSF_MOUSE (Q9ESD7) Dysferlin (Dystrophy-associated fer-1-like protein)| (Fer-1-like protein 1) Length = 2083 Score = 30.4 bits (67), Expect = 6.6 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Frame = -1 Query: 224 LPSQR*LWLPS-HLRFPADFYSTLQKPIG--LIKKKSLSPPPTEKSLAPLPARLKIGITM 54 +P Q L PS F A Q+P G L+ + S +PPP L P PA L T+ Sbjct: 87 IPLQEVLATPSLSASFNAPLLDAKQQPTGASLVLQVSYTPPPGAVPLFPPPASLAPSPTL 146 Query: 53 PFLPAPEKTG 24 P + TG Sbjct: 147 PDMDLVPDTG 156
>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 1002 Score = 24.6 bits (52), Expect(2) = 7.8 Identities = 12/37 (32%), Positives = 16/37 (43%) Frame = -1 Query: 116 PPPTEKSLAPLPARLKIGITMPFLPAPEKTGPPPLLP 6 P PT + P+P + P P +G PPL P Sbjct: 213 PVPTLPPVPPVPPIPPVPSVPPMTTLPPMSGMPPLNP 249 Score = 23.9 bits (50), Expect(2) = 7.8 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -2 Query: 241 VRPPLIFPLNANSGFPPTYVSPPIFIQP 158 V PP I P+ A PP PPI + P Sbjct: 185 VPPPPIPPIPAMPSLPPLPSIPPIPVPP 212
>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)| (ZAP113) Length = 1951 Score = 30.0 bits (66), Expect = 8.6 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 6/43 (13%) Frame = -1 Query: 116 PPPTEKSLAPL------PARLKIGITMPFLPAPEKTGPPPLLP 6 PPP K + PAR + +T P +P P PPPL P Sbjct: 1320 PPPMGKPPGSIVRPSAPPARSSVPVTRPPVPIPPPPPPPPLPP 1362 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 117,335,013 Number of Sequences: 219361 Number of extensions: 2576814 Number of successful extensions: 6604 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5908 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6565 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 8466635400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
