ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1o22 |
|---|---|
| Clone Library Name | barley_pub |
>CTCF_HUMAN (P49711) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 727 Score = 32.3 bits (72), Expect = 1.3 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 35 RQFTYTFQQPFSCVMHTWINSNV*-FKRHIRGHKGDNNF 148 R++ +T ++PF C M + + V KRHIR H G+ F Sbjct: 341 RRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPF 379
>CTCF_MOUSE (Q61164) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 736 Score = 32.3 bits (72), Expect = 1.3 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 35 RQFTYTFQQPFSCVMHTWINSNV*-FKRHIRGHKGDNNF 148 R++ +T ++PF C M + + V KRHIR H G+ F Sbjct: 341 RRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPF 379
>CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 737 Score = 32.3 bits (72), Expect = 1.3 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 35 RQFTYTFQQPFSCVMHTWINSNV*-FKRHIRGHKGDNNF 148 R++ +T ++PF C M + + V KRHIR H G+ F Sbjct: 341 RRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPF 379
>CTCF_CHICK (Q08705) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 728 Score = 32.3 bits (72), Expect = 1.3 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 35 RQFTYTFQQPFSCVMHTWINSNV*-FKRHIRGHKGDNNF 148 R++ +T ++PF C M + + V KRHIR H G+ F Sbjct: 341 RRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPF 379
>WTF19_SCHPO (O74486) Hypothetical protein wtf19| Length = 393 Score = 26.9 bits (58), Expect(2) = 4.0 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = -3 Query: 480 LKVIALTTRTIRNGLYNTKKDRVARNNSKKDNLFIYFSKWCPRCFSFGIS 331 L I++ + Y T KD + ++ K + ++YF+ WC C IS Sbjct: 106 LSFISIFVLNVPAVCYLTYKDALFKDYGKDE--WVYFAVWCASCLMIFIS 153 Score = 22.3 bits (46), Expect(2) = 4.0 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%) Frame = -1 Query: 260 CLIIFISFFY-YVGWCMKVNI 201 CL+IFIS +Y Y W V + Sbjct: 147 CLMIFISLWYFYETWIKAVKV 167
>BORIS_HUMAN (Q8NI51) Transcriptional repressor CTCFL (CCCTC-binding factor)| (Brother of the regulator of imprinted sites) (Zinc finger protein CTCF-T) (CTCF paralog) Length = 663 Score = 30.4 bits (67), Expect = 5.0 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 35 RQFTYTFQQPFSCVMHTWINSNV*-FKRHIRGHKGDNNF 148 R++ +T ++PF C M + + KRH+R H G+ F Sbjct: 332 RRYKHTHEKPFKCSMCKYASVEASKLKRHVRSHTGERPF 370
>WTF23_SCHPO (O94409) Hypothetical protein wtf23| Length = 368 Score = 25.8 bits (55), Expect(2) = 8.5 Identities = 14/50 (28%), Positives = 23/50 (46%) Frame = -3 Query: 480 LKVIALTTRTIRNGLYNTKKDRVARNNSKKDNLFIYFSKWCPRCFSFGIS 331 L I++ + Y T KD + ++ K + ++YF WC C IS Sbjct: 106 LSFISIFVLNVPAVCYLTYKDALFKDYGKDE--WVYFGVWCAICLMIFIS 153 Score = 22.3 bits (46), Expect(2) = 8.5 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%) Frame = -1 Query: 260 CLIIFISFFY-YVGWCMKVNI 201 CL+IFIS +Y Y W V + Sbjct: 147 CLMIFISLWYFYETWIKAVKV 167 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,857,668 Number of Sequences: 219361 Number of extensions: 1877889 Number of successful extensions: 3739 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3734 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
