ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1o21 |
|---|---|
| Clone Library Name | barley_pub |
>RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1479 Score = 338 bits (868), Expect = 7e-93 Identities = 182/229 (79%), Positives = 191/229 (83%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR Sbjct: 1209 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 1268 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV Sbjct: 1269 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 1328 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKVRVSEDGMSNVF PGELIGLLRAERAGRALDESIYYRAILLGITRA F + Sbjct: 1329 TSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEA 1388 Query: 151 KFSRNCSSFSKSCPTRSH*LVERLERKRSXWGGLYLLXPDXQKFVHRSP 5 F +K+ ++ L ++ GG+ + QKFVHRSP Sbjct: 1389 SFQETARVLAKAALRGRIDWLKGL-KENVVLGGIIPVGTGFQKFVHRSP 1436
>RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1527 Score = 335 bits (859), Expect = 8e-92 Identities = 180/229 (78%), Positives = 191/229 (83%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYG+ILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR Sbjct: 1246 ATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 1305 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV Sbjct: 1306 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 1365 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRA F + Sbjct: 1366 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEA 1425 Query: 151 KFSRNCSSFSKSCPTRSH*LVERLERKRSXWGGLYLLXPDXQKFVHRSP 5 F +K+ ++ L ++ GG+ + QKFVHRSP Sbjct: 1426 SFQETARVLAKAALRGRIDWLKGL-KENVVLGGIIPVGTGFQKFVHRSP 1473
>RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 335 bits (859), Expect = 8e-92 Identities = 180/229 (78%), Positives = 191/229 (83%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYG+ILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR Sbjct: 1253 ATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 1312 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV Sbjct: 1313 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 1372 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRA F + Sbjct: 1373 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEA 1432 Query: 151 KFSRNCSSFSKSCPTRSH*LVERLERKRSXWGGLYLLXPDXQKFVHRSP 5 F +K+ ++ L ++ GG+ + QKFVHRSP Sbjct: 1433 SFQETARVLAKAALRGRIDWLKGL-KENVVLGGIIPVGTGFQKFVHRSP 1480
>RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 335 bits (859), Expect = 8e-92 Identities = 180/229 (78%), Positives = 191/229 (83%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYG+ILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR Sbjct: 1253 ATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 1312 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV Sbjct: 1313 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 1372 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRA F + Sbjct: 1373 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEA 1432 Query: 151 KFSRNCSSFSKSCPTRSH*LVERLERKRSXWGGLYLLXPDXQKFVHRSP 5 F +K+ ++ L ++ GG+ + QKFVHRSP Sbjct: 1433 SFQETARVLAKAALRGRIDWLKGL-KENVVLGGIIPVGTGFQKFVHRSP 1480
>RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 329 bits (843), Expect = 6e-90 Identities = 177/229 (77%), Positives = 188/229 (82%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 ATTGATV+GHYGEILYKGDRLVTFIYEK+RSSDITQGLPKVEQIFEARSIDSLSPNLERR Sbjct: 1234 ATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGLPKVEQIFEARSIDSLSPNLERR 1293 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 IEDWNERIPRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV Sbjct: 1294 IEDWNERIPRILGGPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 1353 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKVRVSEDGMSNVF PGELIGLLRAERAGRALDESIYYRAILLGITR F + Sbjct: 1354 TSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRVSLNTQSFISEA 1413 Query: 151 KFSRNCSSFSKSCPTRSH*LVERLERKRSXWGGLYLLXPDXQKFVHRSP 5 F +K+ ++ L ++ GG+ + QKFVHR P Sbjct: 1414 SFQETARVLAKAALRGRIDWLKGL-KENVVLGGIIPVGTGFQKFVHRYP 1461
>RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 329 bits (843), Expect = 6e-90 Identities = 177/229 (77%), Positives = 188/229 (82%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 ATTGATV+GHYGEILYKGDRLVTFIYEK+RSSDITQGLPKVEQIFEARSIDSLSPNLERR Sbjct: 1234 ATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGLPKVEQIFEARSIDSLSPNLERR 1293 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 IEDWNERIPRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV Sbjct: 1294 IEDWNERIPRILGGPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 1353 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKVRVSEDGMSNVF PGELIGLLRAERAGRALDESIYYRAILLGITR F + Sbjct: 1354 TSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRVSLNTQSFISEA 1413 Query: 151 KFSRNCSSFSKSCPTRSH*LVERLERKRSXWGGLYLLXPDXQKFVHRSP 5 F +K+ ++ L ++ GG+ + QKFVHR P Sbjct: 1414 SFQETARVLAKAALRGRIDWLKGL-KENVVLGGIIPVGTGFQKFVHRYP 1461
>RPOC2_EUCGG (Q49L08) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 289 bits (739), Expect(2) = 3e-78 Identities = 148/192 (77%), Positives = 161/192 (83%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYGEILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1113 ATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR 1172 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 IE WNE I +ILG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ+ Sbjct: 1173 IEGWNEHIKKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQI 1232 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVFLPGELIGLLRA R GRAL+ESI YRAILLGITRA F + Sbjct: 1233 TSKVLVSEDGMSNVFLPGELIGLLRAARTGRALEESICYRAILLGITRASLNTQSFISEA 1292 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1293 SFQETARVLAKA 1304 Score = 82.0 bits (201), Expect = 2e-15 Identities = 41/42 (97%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1283 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGG 1324 Score = 23.5 bits (49), Expect(2) = 3e-78 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTG 33 K K+ +GG+IPVGTG Sbjct: 1314 KGLKENVVIGGMIPVGTG 1331
>RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1377 Score = 288 bits (736), Expect(2) = 8e-78 Identities = 147/192 (76%), Positives = 163/192 (84%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GH GEILY+GD LVTFIYEKSRS DITQGLPKVEQ+ EARSIDS+S NLE+R Sbjct: 1107 ATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEARSIDSISMNLEKR 1166 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 +E WNERI +ILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ+ Sbjct: 1167 VEGWNERITKILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQI 1226 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TS+V VSEDGMSNVF PGELIGLLRAER GRAL+E+I YRAILLGITRA F + Sbjct: 1227 TSRVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEA 1286 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1287 SFQETARVLAKA 1298 Score = 82.0 bits (201), Expect = 2e-15 Identities = 41/42 (97%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1277 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1318 Score = 23.1 bits (48), Expect(2) = 8e-78 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTG 33 K K+ LGG++PVGTG Sbjct: 1308 KGLKENVVLGGMMPVGTG 1325
>RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1361 Score = 287 bits (734), Expect = 2e-77 Identities = 153/228 (67%), Positives = 175/228 (76%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GAT++GHYGEI+Y+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1097 ATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEKR 1156 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 I+ WNERI RILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ+ Sbjct: 1157 IDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQI 1216 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVFLPGELIGL RAER GRAL+E+I YRA LLGITRA F + Sbjct: 1217 TSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISEA 1276 Query: 151 KFSRNCSSFSKSCPTRSH*LVERLERKRSXWGGLYLLXPDXQKFVHRS 8 F +K+ ++ L ++ GG+ + + FVH S Sbjct: 1277 SFQETARVLAKAALRGRIDWLKGL-KENVVLGGMIPVGTGFKGFVHHS 1323
>RPOC2_ACOCL (Q3V544) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 286 bits (733), Expect(2) = 4e-77 Identities = 145/192 (75%), Positives = 161/192 (83%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYGEILY GD L+TFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1106 ATPGATVHGHYGEILYGGDTLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISTNLEKR 1165 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 +E WNE I +ILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN+HIEII+RQ+ Sbjct: 1166 VEGWNEHITKILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNKHIEIIVRQI 1225 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YRAILLGITRA F + Sbjct: 1226 TSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEA 1285 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1286 SFQETARVLAKA 1297 Score = 79.3 bits (194), Expect = 1e-14 Identities = 39/41 (95%), Positives = 40/41 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNTQSFISEASFQETARVLAKAALRGR+DWLKGLKENVV G Sbjct: 1276 LNTQSFISEASFQETARVLAKAALRGRVDWLKGLKENVVLG 1316 Score = 21.9 bits (45), Expect(2) = 4e-77 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTG 33 K K+ LG +IPVGTG Sbjct: 1307 KGLKENVVLGAMIPVGTG 1324
>RPOC2_SILLA (Q589B8) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 286 bits (731), Expect = 5e-77 Identities = 149/228 (65%), Positives = 176/228 (77%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYGEI+Y+GD LVTFIYEKSRS DITQGLPKVEQ+ E RS++S+S NLE+R Sbjct: 1099 ATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSVESISMNLEKR 1158 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 I WNERI +ILG+PWGFL+GAELTIAQSRISLVNKIQKVYRSQGVQIH+RHIEII+RQ+ Sbjct: 1159 INGWNERIKKILGIPWGFLVGAELTIAQSRISLVNKIQKVYRSQGVQIHDRHIEIIVRQI 1218 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSN+FLPGELIGL RAER GRAL+E+I YR ILLGITRA F + Sbjct: 1219 TSKVLVSEDGMSNIFLPGELIGLFRAERTGRALEEAICYRTILLGITRASLNTQSFISEA 1278 Query: 151 KFSRNCSSFSKSCPTRSH*LVERLERKRSXWGGLYLLXPDXQKFVHRS 8 F +K+ ++ L ++ GG+ + + FVHRS Sbjct: 1279 SFQETARVLAKAALRGRIDWLKGL-KENVVLGGMIPVGTGFKGFVHRS 1325
>RPOC2_CUCSA (Q4VZP3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1394 Score = 284 bits (726), Expect(2) = 6e-77 Identities = 144/192 (75%), Positives = 162/192 (84%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT+GATV+ HYGEILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S +LE+R Sbjct: 1115 ATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKR 1174 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 IE WNERI RILG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGV+IHNRHIEII+RQ+ Sbjct: 1175 IEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQI 1234 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YRA+LLGIT+A F + Sbjct: 1235 TSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEA 1294 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1295 SFQETARVLAKA 1306 Score = 80.9 bits (198), Expect = 3e-15 Identities = 40/42 (95%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAALRGRIDWL+GLKENVV GG Sbjct: 1285 LNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGG 1326 Score = 23.9 bits (50), Expect(2) = 6e-77 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -1 Query: 77 KKT*XLGGIIPVGTG 33 K+ LGG+IPVGTG Sbjct: 1319 KENVVLGGMIPVGTG 1333
>RPOC2_PHAAO (Q3BAQ2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 285 bits (729), Expect = 9e-77 Identities = 152/227 (66%), Positives = 173/227 (76%) Frame = -2 Query: 688 TTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRI 509 T GATV+GHYGE Y+GD L+TFIYEKSRS DITQGLPKVEQI E RSIDS+S NLERR+ Sbjct: 1112 TPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLERRV 1171 Query: 508 EDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVT 329 E W+ERI RILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRH+EII+RQVT Sbjct: 1172 EGWDERIRRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHLEIIVRQVT 1231 Query: 328 SKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*SK 149 S+V VSEDGMSNVFLPGE IGLLRAERAGR L ESI YRAILLGIT++ F + Sbjct: 1232 SRVLVSEDGMSNVFLPGEFIGLLRAERAGRVLAESICYRAILLGITKSSLNTQSFISEAS 1291 Query: 148 FSRNCSSFSKSCPTRSH*LVERLERKRSXWGGLYLLXPDXQKFVHRS 8 F +K+ ++ L ++ GG+ + K VHRS Sbjct: 1292 FQETARVLAKAALRGRIDWLKGL-KENVVLGGIIPVGTGFNKLVHRS 1337
>RPOC2_NICTO (Q33C48) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 282 bits (721), Expect(2) = 1e-76 Identities = 144/192 (75%), Positives = 160/192 (83%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYGE LY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1113 ATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR 1172 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 IE WN+ I RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRHIEII+RQ+ Sbjct: 1173 IEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHIEIIVRQI 1232 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRA F + Sbjct: 1233 TSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEA 1292 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1293 SFQETARVLAKA 1304 Score = 82.0 bits (201), Expect = 2e-15 Identities = 41/42 (97%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1283 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1324 Score = 25.0 bits (53), Expect(2) = 1e-76 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTG 33 K K+ LGG+IPVGTG Sbjct: 1314 KGLKENVVLGGVIPVGTG 1331
>RPOC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1389 Score = 281 bits (720), Expect(2) = 1e-76 Identities = 143/192 (74%), Positives = 160/192 (83%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYGE LY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1110 ATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR 1169 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 +E WN+ I RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRHIEII+RQ+ Sbjct: 1170 VEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHIEIIVRQI 1229 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRA F + Sbjct: 1230 TSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEA 1289 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1290 SFQETARVLAKA 1301 Score = 82.0 bits (201), Expect = 2e-15 Identities = 41/42 (97%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1280 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1321 Score = 25.0 bits (53), Expect(2) = 1e-76 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTG 33 K K+ LGG+IPVGTG Sbjct: 1311 KGLKENVVLGGVIPVGTG 1328
>RPOC2_NYMAL (Q6EW58) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1401 Score = 284 bits (727), Expect = 2e-76 Identities = 150/228 (65%), Positives = 175/228 (76%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+G YGEI Y+GD LVTFIYEKSRS DIT GLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1109 ATRGATVHGDYGEIFYEGDTLVTFIYEKSRSGDITHGLPKVEQVLEVRSIDSISMNLEKR 1168 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 +E WNE I ILG+PWGFLIGAELTIAQSR+SLVNKIQKVYRSQGVQIHN+HIEII+RQ+ Sbjct: 1169 VEGWNEHITGILGIPWGFLIGAELTIAQSRVSLVNKIQKVYRSQGVQIHNKHIEIIVRQI 1228 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVF PGELIGLLRAERAGRAL+E+I YRA+LLGITRA F + Sbjct: 1229 TSKVLVSEDGMSNVFSPGELIGLLRAERAGRALEEAICYRAVLLGITRASLNTQSFISEA 1288 Query: 151 KFSRNCSSFSKSCPTRSH*LVERLERKRSXWGGLYLLXPDXQKFVHRS 8 F +K+ ++ L ++ GG+ + ++FVHRS Sbjct: 1289 SFQETARVLAKAALRGRIDWLKGL-KENVVLGGMIPVGTGFKRFVHRS 1335
>RPOC2_PANGI (Q68S16) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1387 Score = 282 bits (721), Expect(2) = 2e-76 Identities = 143/192 (74%), Positives = 160/192 (83%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYGEILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1108 ATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR 1167 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 +E WNE I R LG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ+ Sbjct: 1168 VEGWNECITRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQI 1227 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVFLPGE IGLLRAER GRAL+E+I Y+A+LLGIT+A F + Sbjct: 1228 TSKVLVSEDGMSNVFLPGEFIGLLRAERMGRALEEAICYQAVLLGITKASLNTQSFISEA 1287 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1288 SFQETARVLAKA 1299 Score = 82.0 bits (201), Expect = 2e-15 Identities = 41/42 (97%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1278 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1319 Score = 24.3 bits (51), Expect(2) = 2e-76 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTG 33 K K+ LGG+IPVGTG Sbjct: 1309 KGLKENVVLGGMIPVGTG 1326
>RPOC2_NICSY (Q3C1G9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 281 bits (718), Expect(2) = 2e-76 Identities = 142/192 (73%), Positives = 160/192 (83%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYGE LY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RS+DS+S NLE+R Sbjct: 1113 ATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEKR 1172 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 IE WN+ I RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRH+EII+RQ+ Sbjct: 1173 IEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQI 1232 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRA F + Sbjct: 1233 TSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEA 1292 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1293 SFQETARVLAKA 1304 Score = 82.0 bits (201), Expect = 2e-15 Identities = 41/42 (97%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1283 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1324 Score = 25.0 bits (53), Expect(2) = 2e-76 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTG 33 K K+ LGG+IPVGTG Sbjct: 1314 KGLKENVVLGGVIPVGTG 1331
>RPOC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 281 bits (718), Expect(2) = 2e-76 Identities = 142/192 (73%), Positives = 160/192 (83%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYGE LY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RS+DS+S NLE+R Sbjct: 1109 ATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEKR 1168 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 IE WN+ I RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRH+EII+RQ+ Sbjct: 1169 IEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQI 1228 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRA F + Sbjct: 1229 TSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEA 1288 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1289 SFQETARVLAKA 1300 Score = 82.0 bits (201), Expect = 2e-15 Identities = 41/42 (97%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1279 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1320 Score = 25.0 bits (53), Expect(2) = 2e-76 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTG 33 K K+ LGG+IPVGTG Sbjct: 1310 KGLKENVVLGGVIPVGTG 1327
>RPOC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 280 bits (715), Expect(2) = 3e-76 Identities = 142/192 (73%), Positives = 160/192 (83%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYGEIL +GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1111 ATPGATVHGHYGEILSEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR 1170 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 ++ WN RI +ILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGV IHNRHIEII+RQ+ Sbjct: 1171 VDTWNGRITKILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQI 1230 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVFLPGELIGLLRAERAGR+L+E+I YR +LLGIT+ F + Sbjct: 1231 TSKVLVSEDGMSNVFLPGELIGLLRAERAGRSLEEAICYRVLLLGITKTSLNTQSFISEA 1290 Query: 151 KFSRNCSSFSKS 116 F SK+ Sbjct: 1291 SFQETARVLSKA 1302 Score = 80.9 bits (198), Expect = 3e-15 Identities = 40/42 (95%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVL+KAALRGRIDWLKGLKENVV GG Sbjct: 1281 LNTQSFISEASFQETARVLSKAALRGRIDWLKGLKENVVLGG 1322 Score = 25.8 bits (55), Expect(2) = 3e-76 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTGXPKI 21 K K+ LGG+IPVGTG +I Sbjct: 1312 KGLKENVVLGGMIPVGTGFKRI 1333
>RPOC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 281 bits (718), Expect(2) = 7e-76 Identities = 142/192 (73%), Positives = 158/192 (82%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYGEILY GD +VTF+YEKSRS DITQGLPKVEQ+ E RS+DS+S NLE+R Sbjct: 1108 ATPGATVHGHYGEILYDGDTVVTFLYEKSRSGDITQGLPKVEQVLEVRSVDSISVNLEKR 1167 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 +E+WNE I RILG PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ+ Sbjct: 1168 VENWNEHITRILGFPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQI 1227 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVFLP ELIGLLRAER GRAL+ESI Y+A LLGITR F + Sbjct: 1228 TSKVLVSEDGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEA 1287 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1288 SFQETARVLAKA 1299 Score = 82.0 bits (201), Expect = 2e-15 Identities = 41/42 (97%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1278 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGG 1319 Score = 23.5 bits (49), Expect(2) = 7e-76 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTG 33 K K+ +GG+IPVGTG Sbjct: 1309 KGLKENVVIGGMIPVGTG 1326
>RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1376 Score = 280 bits (716), Expect(2) = 7e-76 Identities = 143/192 (74%), Positives = 160/192 (83%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GA V+GHY EILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1104 ATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKR 1163 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 I+ WN+ I RILG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ+ Sbjct: 1164 IKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQI 1223 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSE+GMSNVFLPGELIGLLRAER GRAL+E+I YRA+LLGITRA F + Sbjct: 1224 TSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEA 1283 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1284 SFQETARVLAKA 1295 Score = 82.0 bits (201), Expect = 2e-15 Identities = 41/42 (97%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1274 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1315 Score = 24.3 bits (51), Expect(2) = 7e-76 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTGXPK 24 K K+ LGG+IP GTG K Sbjct: 1305 KGLKENVVLGGVIPAGTGFNK 1325
>RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1332 Score = 275 bits (702), Expect(2) = 2e-75 Identities = 139/192 (72%), Positives = 158/192 (82%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GAT++GHYGE+LY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1086 ATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR 1145 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 I+ WNERI ILG+PW FLIGAELTIAQSRISLVNKIQ+VYRSQGV IHNRHIEII+RQ+ Sbjct: 1146 IDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQI 1205 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVF PGELIGLLRA+R GRAL+ESI YR +LLGIT+ F + Sbjct: 1206 TSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEA 1265 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1266 SFQETARVLAKA 1277 Score = 80.9 bits (198), Expect = 3e-15 Identities = 40/42 (95%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN+V GG Sbjct: 1256 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENLVLGG 1297 Score = 28.1 bits (61), Expect(2) = 2e-75 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTGXPKI 21 K K+ LGGIIPVGTG KI Sbjct: 1287 KGLKENLVLGGIIPVGTGFKKI 1308
>RPOC2_LACSA (Q56P11) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1381 Score = 279 bits (714), Expect(2) = 3e-75 Identities = 142/192 (73%), Positives = 159/192 (82%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYGEILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1106 ATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR 1165 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 IE WN+ I RILG+PW FLIGAELTI QSRISLVNK+QKVYRSQGVQIHNRHIEII+RQ+ Sbjct: 1166 IEGWNKSITRILGIPWAFLIGAELTIVQSRISLVNKVQKVYRSQGVQIHNRHIEIIVRQI 1225 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSED MSNVF PGELIGLLRAER GRAL+E+I Y+A+LLGITRA F + Sbjct: 1226 TSKVLVSEDEMSNVFSPGELIGLLRAERMGRALEEAICYQAVLLGITRASMNTQSFISEA 1285 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1286 SFQETARVLAKA 1297 Score = 78.6 bits (192), Expect = 2e-14 Identities = 39/42 (92%), Positives = 40/42 (95%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 +NTQSFISEASFQETARVLAKAAL GRIDWLKGLKENVV GG Sbjct: 1276 MNTQSFISEASFQETARVLAKAALLGRIDWLKGLKENVVLGG 1317 Score = 22.7 bits (47), Expect(2) = 3e-75 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTG 33 K K+ LGG+IPVG+G Sbjct: 1307 KGLKENVVLGGMIPVGSG 1324
>RPOC2_SOLTU (Q2VEI6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 276 bits (706), Expect(2) = 6e-75 Identities = 140/192 (72%), Positives = 159/192 (82%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYGE L +G+ LVTFIYEKS S DITQGLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1113 ATPGATVHGHYGETLNQGNTLVTFIYEKSISDDITQGLPKVEQVLEVRSIDSISMNLEKR 1172 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 +E WN+ IPRILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRHIEII+RQ+ Sbjct: 1173 VESWNKCIPRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHIEIIVRQI 1232 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV +SEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRA F + Sbjct: 1233 TSKVLISEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEA 1292 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1293 SFQETARVLAKA 1304 Score = 82.0 bits (201), Expect = 2e-15 Identities = 41/42 (97%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1283 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1324 Score = 25.0 bits (53), Expect(2) = 6e-75 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTG 33 K K+ LGG+IPVGTG Sbjct: 1314 KGLKENVVLGGVIPVGTG 1331
>RPOC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) (Fragment) Length = 1163 Score = 278 bits (711), Expect = 1e-74 Identities = 146/228 (64%), Positives = 175/228 (76%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GAT++GHYGEIL +GD LVTFIYEKSRS DITQGLPKVEQI E RSIDS+S NLE+R Sbjct: 898 ATPGATIHGHYGEILSQGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKR 957 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 I+ WNE I +I+G+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGV IHNRHIEII+RQ+ Sbjct: 958 IDAWNECITKIIGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQI 1017 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSN+FLPGELIGLLRAER GRAL+E+I YRA+LLG+T+ F + Sbjct: 1018 TSKVLVSEDGMSNIFLPGELIGLLRAERTGRALEEAICYRALLLGVTKTSLNTQSFISEA 1077 Query: 151 KFSRNCSSFSKSCPTRSH*LVERLERKRSXWGGLYLLXPDXQKFVHRS 8 F +K+ ++ L ++ GG+ + ++ +HRS Sbjct: 1078 SFQETARVLAKAALRGRIDWLKGL-KENVVLGGMIPVGTGFKRIMHRS 1124
>RPOC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1384 Score = 276 bits (705), Expect(2) = 4e-74 Identities = 141/192 (73%), Positives = 159/192 (82%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GA V+GHY EILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1112 ATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKR 1171 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 I+ WN I RILG+PWGFLIGAELTI QSRISLVNKI++VYRSQGVQIHNRHIEII+RQ+ Sbjct: 1172 IKGWNRCITRILGIPWGFLIGAELTIVQSRISLVNKIKQVYRSQGVQIHNRHIEIIVRQI 1231 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSE+GMSNVFLPGELIGLLRAER GRAL+E+I YRA+LLGITRA F + Sbjct: 1232 TSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEA 1291 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1292 SFQETARVLAKA 1303 Score = 82.0 bits (201), Expect = 2e-15 Identities = 41/42 (97%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1282 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1323 Score = 22.7 bits (47), Expect(2) = 4e-74 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTGXPKICA 15 K K+ LGG+IP G G +I A Sbjct: 1313 KGLKENVVLGGVIPPGPGSQRIGA 1336
>RPOC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 272 bits (695), Expect = 8e-73 Identities = 147/228 (64%), Positives = 168/228 (73%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GATV+GHYGEILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R Sbjct: 1102 ATRGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR 1161 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 +E WNERI LG+PW F I A+LTI QSRISLVNKIQKVYRSQGVQIHNRHIE I+RQ+ Sbjct: 1162 VEGWNERITGFLGIPWEFFISAQLTIVQSRISLVNKIQKVYRSQGVQIHNRHIETIVRQI 1221 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV VSEDGMSNVF P ELIGLLRAER GRAL++ I YRAILLGITRA F + Sbjct: 1222 TSKVLVSEDGMSNVFSPRELIGLLRAERIGRALEDDICYRAILLGITRASLNTQSFISEA 1281 Query: 151 KFSRNCSSFSKSCPTRSH*LVERLERKRSXWGGLYLLXPDXQKFVHRS 8 F +K+ RS + ++ GG+ + + FVH S Sbjct: 1282 SFQETTRVLAKAA-LRSRIDWLKGLKENVVLGGMIPVGTGFKGFVHHS 1328
>RPOC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1408 Score = 188 bits (478), Expect(2) = 1e-63 Identities = 93/169 (55%), Positives = 126/169 (74%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GAT++ HYG++L +GD L+T YE+ +S DI QGLPKVEQ+ EARS++++S N+E Sbjct: 1126 ATKGATIHNHYGDLLREGDTLITLTYERFKSGDIIQGLPKVEQLLEARSVNAVSRNIEDN 1185 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 + N I + + PW F A+++ QSR LV++IQ VY+SQGVQI ++HIEII+RQ+ Sbjct: 1186 FKKCNRVIAKFIESPWSFFFSAKISTEQSRKDLVDQIQGVYQSQGVQISDKHIEIIVRQM 1245 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRA 185 TSKV EDG++ VFLPGELI L RA+R RAL + IYY+ ILLGIT+A Sbjct: 1246 TSKVLTLEDGIATVFLPGELIELPRAQRMNRALKQLIYYKPILLGITKA 1294 Score = 75.1 bits (183), Expect(2) = 1e-63 Identities = 35/42 (83%), Positives = 39/42 (92%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNT SF+SEASFQET RVLA+AA+RGRIDWLKGLKENV+ GG Sbjct: 1296 LNTTSFLSEASFQETTRVLARAAIRGRIDWLKGLKENVIIGG 1337
>RPOC2_CHAGL (Q8MA10) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 183 bits (465), Expect(3) = 9e-63 Identities = 87/169 (51%), Positives = 124/169 (73%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT A + G+Y +I+ GD +T +YE+ ++ DI QGLPKVEQ+ EAR +++LS NL+ Sbjct: 1095 ATKNAIIYGNYKQIITSGDNFITIVYERFKTRDIIQGLPKVEQLLEARPLNNLSSNLDFG 1154 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 DWN I R+LG PWGF + + + I QS++ LVN+IQKVY+SQGVQI ++H+EII+RQ+ Sbjct: 1155 FLDWNTDISRLLGNPWGFFLSSLIIIRQSQLELVNQIQKVYQSQGVQISDKHLEIIVRQM 1214 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRA 185 TS+V +E+ N FLPGEL+ L +A+R + L+ S+ Y+ ILLGITRA Sbjct: 1215 TSRVLTTEENGPNAFLPGELVDLFKAQRMNQILENSLAYKPILLGITRA 1263 Score = 72.0 bits (175), Expect(3) = 9e-63 Identities = 34/42 (80%), Positives = 38/42 (90%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNT SFISEASFQET +VL KAAL+GRIDWL+GLKENV+ GG Sbjct: 1265 LNTYSFISEASFQETTKVLTKAALQGRIDWLQGLKENVILGG 1306 Score = 26.2 bits (56), Expect(3) = 9e-63 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = -1 Query: 77 KKT*XLGGIIPVGTGXPKI 21 K+ LGGIIP GTG KI Sbjct: 1299 KENVILGGIIPAGTGYQKI 1317
>RPOC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1209 Score = 213 bits (543), Expect(2) = 2e-55 Identities = 111/192 (57%), Positives = 140/192 (72%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT ATV+GHYGEIL KGD L+T IYE+ +SSDI QGLPKVEQ+ EAR +S+S NL+ Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEARLNNSISMNLKES 994 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 E+W + R LG WG I A +T+ QS+I LVN+IQKVYRSQGV+I ++HIEII+RQ+ Sbjct: 995 FENWTGDMTRFLGSLWGLFISARITMEQSQIHLVNQIQKVYRSQGVRIGDKHIEIIVRQM 1054 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV +SEDG +NVF PGELIGL RA+R RAL+E+IYY+ +LLGITRA F + Sbjct: 1055 TSKVLISEDGTANVFSPGELIGLSRAQRMDRALEETIYYQTMLLGITRASLNTQSFISEA 1114 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1115 SFQETARVLAKA 1126 Score = 80.1 bits (196), Expect = 6e-15 Identities = 39/42 (92%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAAL+GRIDWLKGLKENV+ GG Sbjct: 1105 LNTQSFISEASFQETARVLAKAALQGRIDWLKGLKENVILGG 1146 Score = 22.7 bits (47), Expect(2) = 2e-55 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTG 33 K K+ LGG+IP GTG Sbjct: 1136 KGLKENVILGGMIPAGTG 1153
>RPOC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 206 bits (523), Expect(2) = 4e-53 Identities = 107/192 (55%), Positives = 138/192 (71%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT ATV+ HYG+IL KGD L+T IYE+ +SSDI QGLPKVEQ+ EAR +S+S NL+ Sbjct: 949 ATRKATVHSHYGKILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEARLNNSISMNLKES 1008 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 E+W + R LG WG I A +T+ QS+I LVN+IQKVYRSQGV+I ++HIE+I+RQ+ Sbjct: 1009 FENWTGDMTRFLGSLWGLFISARITMEQSQIHLVNQIQKVYRSQGVRIGDKHIEVIVRQM 1068 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV +SEDG +NVF PGELI L RA+R RAL+E+IYY+ +LLGITRA F + Sbjct: 1069 TSKVLISEDGTANVFSPGELIVLSRAQRMDRALEEAIYYQTMLLGITRASLNTQSFISEA 1128 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1129 SFQETARVLAKA 1140 Score = 80.1 bits (196), Expect = 6e-15 Identities = 39/42 (92%), Positives = 41/42 (97%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQETARVLAKAAL+GRIDWLKGLKENV+ GG Sbjct: 1119 LNTQSFISEASFQETARVLAKAALQGRIDWLKGLKENVILGG 1160 Score = 22.7 bits (47), Expect(2) = 4e-53 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTG 33 K K+ LGG+IP GTG Sbjct: 1150 KGLKENVILGGMIPAGTG 1167
>RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 199 bits (507), Expect(2) = 1e-51 Identities = 99/192 (51%), Positives = 137/192 (71%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GAT++ +YGE + +GD L+T IYE+ +S DI QGLPKVEQ+ EAR I+S+S NLE Sbjct: 1102 ATGGATIHNNYGEFIKEGDTLITLIYERLKSGDIIQGLPKVEQLLEARPINSVSINLENG 1161 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 EDWN + + +G WGF + ++++ Q +I+LV++IQKVY+SQGVQI N+HIEII+RQ+ Sbjct: 1162 FEDWNNDMIKFIGNLWGFFLSTKISMEQGQINLVDQIQKVYQSQGVQISNKHIEIIVRQM 1221 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV EDGM+NVFLPGELI R ++ RAL+E++ Y+ ILLGIT+A F + Sbjct: 1222 TSKVITLEDGMTNVFLPGELIEFSRTQKMNRALEEAVPYKPILLGITKASLNTQSFISEA 1281 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1282 SFQETTRVLAKA 1293 Score = 79.0 bits (193), Expect = 1e-14 Identities = 38/42 (90%), Positives = 40/42 (95%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQET RVLAKAAL+GRIDWLKGLKENV+ GG Sbjct: 1272 LNTQSFISEASFQETTRVLAKAALKGRIDWLKGLKENVILGG 1313 Score = 23.9 bits (50), Expect(2) = 1e-51 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTGXPKI 21 K K+ LGG++P GTG ++ Sbjct: 1303 KGLKENVILGGLVPAGTGSQEV 1324
>RPOC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1445 Score = 200 bits (508), Expect = 4e-51 Identities = 101/192 (52%), Positives = 137/192 (71%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GAT++ HYG+I+ KGD L+T +YE+ +S DI QGLPKVEQ+ EAR I+S S NLE Sbjct: 1159 ATGGATIHSHYGQIIKKGDVLITLVYERLKSGDIIQGLPKVEQLLEARPINSTSINLENG 1218 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 E+WN + + LG WGFL+ A+ T+ QS+I+LV++IQ+VY+SQGV I ++HIEI++RQ+ Sbjct: 1219 FENWNRDMTKSLGSLWGFLLSAKTTMNQSQINLVDQIQEVYQSQGVYISDKHIEIVVRQM 1278 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV EDGM+N FLPGELI RA+R R L+ES+ Y+ ILLGIT+A F + Sbjct: 1279 TSKVLTLEDGMANGFLPGELIESSRAQRMNRVLEESVLYKPILLGITKASLNTQSFISEA 1338 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1339 SFQETTRVLAKA 1350 Score = 80.1 bits (196), Expect = 6e-15 Identities = 39/42 (92%), Positives = 40/42 (95%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENV+ GG Sbjct: 1329 LNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVIFGG 1370
>RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1330 Score = 190 bits (483), Expect(2) = 5e-49 Identities = 96/192 (50%), Positives = 134/192 (69%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GA ++ +YGEI+ +GD L+T IYE+ +S DI QGLPKVEQ+ EAR + +S NLE+ Sbjct: 1060 ATGGAIIHNNYGEIVKEGDILITLIYERLKSGDIIQGLPKVEQLLEARLTNPVSINLEKG 1119 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 +WN+ + G WG+ + A++++ QS+++LVN+IQKVYRSQGV I ++HIEII+RQ+ Sbjct: 1120 FGEWNKDMTNFFGSLWGYFLSAQISMEQSQVNLVNQIQKVYRSQGVNISDKHIEIIVRQM 1179 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TSKV EDGM+N FLPGELI RA+R RAL+E I Y+ +LLGIT+A F + Sbjct: 1180 TSKVFTLEDGMTNGFLPGELIEFARAKRMNRALEEVIPYKPVLLGITKASLNTQSFISEA 1239 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1240 SFQETTRVLAKA 1251 Score = 80.1 bits (196), Expect = 6e-15 Identities = 39/42 (92%), Positives = 40/42 (95%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 55 LNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENV+ GG Sbjct: 1230 LNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVILGG 1271 Score = 24.3 bits (51), Expect(2) = 5e-49 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTGXPKI 21 K K+ LGGIIP GTG ++ Sbjct: 1261 KGLKENVILGGIIPTGTGCEEV 1282
>RPOC2_ADICA (Q85FM9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1420 Score = 174 bits (441), Expect(2) = 4e-44 Identities = 88/192 (45%), Positives = 130/192 (67%) Frame = -2 Query: 691 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR 512 AT GA + G+IL +GD L+T Y++ +S DITQGLPKVEQ+ E+RSI S+S + Sbjct: 1136 ATRGANPHKSSGDILEEGDTLITLPYDRLKSGDITQGLPKVEQLLESRSIASISAGIGDL 1195 Query: 511 IEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQV 332 E W + I +++G PW L+GA ++ ++ L+++I+KVY SQGV+I ++H+EII+RQ+ Sbjct: 1196 FEKWCQNITKLIGNPWSHLLGAGRSMEHCQLILIDQIRKVYESQGVRICDKHLEIIVRQL 1255 Query: 331 TSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*S 152 TS+V SEDG++NVFLPGEL+ L +AER R L +SI+Y I+LG+TRA F + Sbjct: 1256 TSRVVASEDGVTNVFLPGELVELSQAERINRVLKKSIFYEPIVLGMTRASLSTTSFLAEA 1315 Query: 151 KFSRNCSSFSKS 116 F +K+ Sbjct: 1316 SFQETTRVLAKA 1327 Score = 72.0 bits (175), Expect = 2e-12 Identities = 35/41 (85%), Positives = 38/41 (92%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SF++EASFQET RVLAKAALRGRIDWLKGLKENVV G Sbjct: 1306 LSTTSFLAEASFQETTRVLAKAALRGRIDWLKGLKENVVIG 1346 Score = 23.9 bits (50), Expect(2) = 4e-44 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -1 Query: 86 KA*KKT*XLGGIIPVGTGXPKI 21 K K+ +G +PVGTG P+I Sbjct: 1337 KGLKENVVIGDSVPVGTGSPEI 1358
>RPOC2_PORPU (P51250) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 99.4 bits (246), Expect(2) = 1e-33 Identities = 58/163 (35%), Positives = 101/163 (61%), Gaps = 7/163 (4%) Frame = -2 Query: 652 ILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIE-DWNERIPRIL 476 ++ KG+ L +++++++ DI QGLP++E+I EAR + N ++ +N L Sbjct: 966 LIRKGETLAVLVFDRAKTGDIIQGLPRIEEILEARKKTDVLLNPHDILDASFN------L 1019 Query: 475 GVPWGFLI--GAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDG 302 + G + A L+ + ++ LV ++Q VY+SQGV I ++HIE+I+RQ+TSKV++ E+G Sbjct: 1020 YIECGLALYEAARLSFQEIQLLLVKEVQLVYQSQGVNISDKHIEVIVRQMTSKVKI-ENG 1078 Query: 301 MSNVFLPGELIGLLRAERAGRALDE----SIYYRAILLGITRA 185 +LPGEL+ L + E+ +++ + YR ILLGIT+A Sbjct: 1079 EETGYLPGELVELQKIEQTNKSMTSRNKLNASYRPILLGITQA 1121 Score = 63.9 bits (154), Expect(2) = 1e-33 Identities = 28/41 (68%), Positives = 36/41 (87%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT+SFIS ASFQET +VL +AA+ G++DWL+GLKENV+ G Sbjct: 1123 LNTESFISAASFQETTKVLTEAAISGKLDWLRGLKENVIIG 1163
>RPOC2_GLOVI (Q7NDF7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1262 Score = 96.3 bits (238), Expect(2) = 2e-32 Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 50/208 (24%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER-------RIEDW 500 G+++ +GD L ++E++++ DI QGLP+VE++ E R + +ER ++ D Sbjct: 963 GDLIQRGDNLALLVFERAKTGDIIQGLPRVEELLEGRKPKEMCVLVERPGKVQITQMPDE 1022 Query: 499 NERIPRIL---GVPWGFLIGAELTIAQSRIS----------------------------- 416 + ++ + GV +IG L + + Sbjct: 1023 SYQVSVVEDDGGVTNYPIIGQSLVVVDGQQVQTGESITDGPSNPHDILRIFTAREGLQKG 1082 Query: 415 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 257 LVN++Q+VYRSQGV+IH++HIEII+RQ+TSKVRV EDG FLPGEL+ L + Sbjct: 1083 IESVQRYLVNEVQQVYRSQGVEIHDKHIEIIVRQMTSKVRV-EDGGDTTFLPGELVELRQ 1141 Query: 256 AERAGRALDESIYYRA----ILLGITRA 185 E+ A+ + A +LLGIT+A Sbjct: 1142 IEQVNEAMAVTGGAPADCTPVLLGITKA 1169 Score = 63.2 bits (152), Expect(2) = 2e-32 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1171 LNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIG 1211
>RPOC2_GRATL (Q6B8R6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1228 Score = 98.2 bits (243), Expect(2) = 5e-32 Identities = 59/163 (36%), Positives = 101/163 (61%), Gaps = 7/163 (4%) Frame = -2 Query: 652 ILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRIEDWNERIPRI 479 ++ +G+ + T I+E+ ++ DI QGLP++E+I EAR S +P++ + + + Sbjct: 970 LIQRGENIATLIFERVKTGDIVQGLPRIEEILEARKKSDSFFNPHVVL-----DSKFRQY 1024 Query: 478 LGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGM 299 + L++ ++ LV ++Q VY+SQGV+I ++HIE+I+RQ+TSKV++ E+G Sbjct: 1025 VNQGLNLYDATRLSLLILQLYLVKELQLVYQSQGVEIADKHIEVIVRQMTSKVKI-ENGG 1083 Query: 298 SNVFLPGELIGLLRAERAGRAL-----DESIYYRAILLGITRA 185 LPGE+I L + E +AL +E++YY ILLGIT+A Sbjct: 1084 DTDHLPGEIIELQKIEMLNKALRLASKEEALYY-PILLGITKA 1125 Score = 59.7 bits (143), Expect(2) = 5e-32 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT+SFIS ASFQET +VL AA+ ++DWL+GLKENV+ G Sbjct: 1127 LNTESFISAASFQETTKVLTDAAISCKLDWLRGLKENVIIG 1167
>RPOC2_SYNEL (Q8DL57) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1324 Score = 92.8 bits (229), Expect(2) = 2e-31 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 58/224 (25%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS-------------- 545 GA + G+++ +GD L ++E++++ DI QGLP++E++ EAR Sbjct: 955 GAVLQIEEGDLVQRGDNLALLVFERAKTGDIIQGLPRIEELLEARHPKEKCVLAVRPGTC 1014 Query: 544 ----------------------------------IDSLSPNLERRIEDWNERIPRILGV- 470 +D NL + D IL + Sbjct: 1015 QVTYNSDDSVEIKVIEEDGTIQEYPVLPGQNPLVVDGQKVNLADPLTDGPVDPHDILSIY 1074 Query: 469 -----PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSED 305 P G L A+ ++ + + LVN++Q VY SQG++I ++HIE+I+RQ+TSKVR+ + Sbjct: 1075 FEYYKPQGLLKAAQTSLEKVQSFLVNEVQSVYLSQGIEIADKHIEVIVRQMTSKVRIDDA 1134 Query: 304 GMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 G + L GEL+ L +AE+A + Y +LLGIT+A Sbjct: 1135 G-DTILLSGELMTLRQAEQANEPMALTGGAPAQYTPVLLGITKA 1177 Score = 63.2 bits (152), Expect(2) = 2e-31 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1179 LNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIG 1219
>RPOC2_EUGGR (P23581) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 830 Score = 86.7 bits (213), Expect(3) = 3e-30 Identities = 57/156 (36%), Positives = 90/156 (57%) Frame = -2 Query: 655 EILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRIL 476 ++LY+ V F+ EK+ DI QGLPKVE++ EAR SL + + E L Sbjct: 629 QLLYR----VNFVREKTY--DIVQGLPKVEKLLEARMTSSLKEIINNPHDILTESFFTFL 682 Query: 475 GVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMS 296 + L+ A + + L++ +Q VY+SQGV+I ++HIE+I++Q+TSKV V+ G S Sbjct: 683 D-DYENLVAARKSFEVIQKYLIDGVQTVYKSQGVKIADKHIELIVKQITSKVIVTNPGDS 741 Query: 295 NVFLPGELIGLLRAERAGRALDESIYYRAILLGITR 188 + F+ G+ + L E + L SI Y I++G+TR Sbjct: 742 S-FMVGDFLDLNLVEVLNKRLVNSIVYEPIIMGLTR 776 Score = 64.3 bits (155), Expect(3) = 3e-30 Identities = 30/41 (73%), Positives = 36/41 (87%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L++QSFI++ASFQET RVL KAAL+GR DWL GLKEN+V G Sbjct: 779 LSSQSFIAQASFQETTRVLTKAALQGRADWLSGLKENLVLG 819 Score = 21.2 bits (43), Expect(3) = 3e-30 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = -1 Query: 77 KKT*XLGGIIPVGTG 33 K+ LG IIP GTG Sbjct: 813 KENLVLGNIIPAGTG 827
>RPOC2_PROMA (Q7VA30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1367 Score = 86.3 bits (212), Expect(2) = 2e-29 Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 60/218 (27%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR----------- 512 G+++ +GD L ++E+ ++ DI QGLP++E++ EAR + +RR Sbjct: 989 GDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEARRPRDSAILCKRRGIVEINQGDDD 1048 Query: 511 ---------IEDWNERIPRILG----------VPWGFLI--------------------- 452 +D E P +LG V G L+ Sbjct: 1049 DSVVVKVIESDDLIEEYPILLGKNVMISDGQEVKAGELLTDGPVNPHELLECFFGDLRDR 1108 Query: 451 -----GAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVF 287 A+ IA+ + LV ++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED Sbjct: 1109 KPLMEAAQEAIAKLQHRLVTEVQNVYKSQGVAIDDKHIEVIVRQMTSKVRI-EDAGDTTL 1167 Query: 286 LPGELIGLLRAERAGRALD----ESIYYRAILLGITRA 185 LPGELI + + E +A+ + +LLGIT+A Sbjct: 1168 LPGELIEIRQVEDTNQAISITGGAPAEFTPVLLGITKA 1205 Score = 63.2 bits (152), Expect(2) = 2e-29 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1207 LNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIG 1247
>RPOC2_GUITH (O78483) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1286 Score = 82.8 bits (203), Expect(2) = 1e-28 Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 59/227 (25%) Frame = -2 Query: 688 TTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------- 548 + GA + E++ + D L ++E+S++ DI QGLP++E+I EAR Sbjct: 947 SAGAILQIKDHELVQRNDTLAILVFERSKTGDIVQGLPRIEEILEARKPKEPCKLSQKPG 1006 Query: 547 SIDSLSPNLERRI--------------------------------EDWNERIP---RILG 473 I++ + N E + E + P +L Sbjct: 1007 KINTTNSNDETEVIQLIDTDGYTTDYIINNNQKLIISNGENVLLAEPLTDGAPNPHEMLN 1066 Query: 472 VPWGFLIGAELTIAQSRISL-------VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRV 314 + + F +++SL V+++QKVY+SQ V I ++HIE+I+RQ+TSKV+V Sbjct: 1067 LYFNFYTSIITLYESAKLSLQKVQTYLVDEVQKVYQSQNVDISDKHIEVIVRQMTSKVKV 1126 Query: 313 SEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 EDG LPGEL+ L + E A+ Y ILLGIT+A Sbjct: 1127 -EDGGDTTLLPGELVELQQIENINEAMMLTKGVPATYCPILLGITKA 1172 Score = 63.5 bits (153), Expect(2) = 1e-28 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1174 LNTDSFISAASFQETTRVLTEAAIEGKADWLRGLKENVIIG 1214
>RPOC2_ANASP (P22705) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1355 Score = 82.0 bits (201), Expect(2) = 3e-28 Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 59/225 (26%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIE- 506 GA + G+++ +GD LV ++E++++ DI QGLP++E++ EAR +R E Sbjct: 982 GAVLQIEDGDLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKEACILAKRGGEV 1041 Query: 505 -----DWNERIP------------------RILGVPWG---------------------- 461 D +E I + L +P G Sbjct: 1042 KVVYGDGDEAIAIKVIESNGVVTDYPLGPGQNLAMPDGSVVPAGQPLSDGPSNPHEILEV 1101 Query: 460 -FLIGAELTIAQSRISLVNKIQ--------KVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 308 F +G+E + + K+Q VY+SQG+ I ++HIE+I+RQ+T+KVR+ + Sbjct: 1102 FFSLGSEDGVYACASHALQKVQTFLVNEVQMVYQSQGIDIADKHIEVIVRQMTNKVRI-D 1160 Query: 307 DGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 DG LPGEL+ L + E+ A+ Y +LLGIT+A Sbjct: 1161 DGGDTTMLPGELVELRQVEQVNEAMAITGGARAQYTPVLLGITKA 1205 Score = 63.2 bits (152), Expect(2) = 3e-28 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1207 LNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIG 1247
>RPOC_CYAME (Q85FR6) Bifunctional DNA-directed RNA polymerase beta' and beta''| chain (EC 2.7.7.6) (PEP) [Includes: DNA-directed RNA polymerase beta' chain (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit); DNA-directed RNA poly Length = 1676 Score = 82.4 bits (202), Expect(2) = 5e-28 Identities = 59/200 (29%), Positives = 103/200 (51%), Gaps = 42/200 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNL-------ERRIEDW 500 G+++ +GD L + ++E+ ++ DI QGLP++E+I EAR + E+ + Sbjct: 1429 GDLVNEGDHLASLVFEQVKTGDIIQGLPRIEEILEARKPKNSCELAQFDGVIQEQSLVSD 1488 Query: 499 NERIPRILG----------------------------------VPW-GFLIGAELTIAQS 425 + R+ I G VP+ G + A + A+ Sbjct: 1489 DGRVQAIKGTLIVCEGTRVQAGEPLTDGAVNAHEWLQIHFNNAVPYRGMVEAARESFAKL 1548 Query: 424 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 245 + L++++Q+VY+SQGV I ++HIE+I+RQ+TSKV + + G S+ FLPG+L+ L Sbjct: 1549 QAKLLHQVQQVYKSQGVDIADKHIEVILRQMTSKVILDDPGDSD-FLPGQLVYLNEI--- 1604 Query: 244 GRALDESIYYRAILLGITRA 185 A + + + +LLGIT+A Sbjct: 1605 --ASYKHVIFHPVLLGITKA 1622 Score = 62.0 bits (149), Expect(2) = 5e-28 Identities = 29/41 (70%), Positives = 36/41 (87%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT+SFIS ASFQET R+LA+AA+ G+ID L+GLKENV+ G Sbjct: 1624 LNTESFISAASFQETTRILAQAAMEGQIDQLRGLKENVIMG 1664
>RPOC2_PROMP (Q7V008) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1366 Score = 77.8 bits (190), Expect(2) = 5e-27 Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 61/219 (27%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPK---------------------VEQIFEARSI 542 G+++ +GD L ++E+ ++ DI QGLP+ V QI E Sbjct: 989 GDLVLRGDGLALLVFERQKTGDIVQGLPRIEELLEARRPRDSSILCKKSGVVQIKEGTDE 1048 Query: 541 DSLSPNLERRIEDWNERIPRILG----------VPWGFLI-------------------- 452 +S+S ++ R + +E ++G V G L+ Sbjct: 1049 ESVSLSVIERDDSISE-YQLLMGQNIMVSDGQQVTGGELLTDGPINPHDLLDCLFTDLKD 1107 Query: 451 ------GAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 290 A+ +I++ + +VN++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED Sbjct: 1108 QKPLMEAAQESISKLQRKMVNEVQNVYKSQGVAISDKHIEVIVRQMTSKVRI-EDAGDTT 1166 Query: 289 FLPGELIGLLRAERAGRALD----ESIYYRAILLGITRA 185 LPGELI L + E +A+ + +LLGIT+A Sbjct: 1167 LLPGELIELRQVEDTNQAMSITGGAPAEFTPVLLGITKA 1205 Score = 63.2 bits (152), Expect(2) = 5e-27 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1207 LNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIG 1247
>RPOC2_PROMT (Q46J24) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1369 Score = 73.6 bits (179), Expect(2) = 1e-25 Identities = 41/92 (44%), Positives = 61/92 (66%), Gaps = 4/92 (4%) Frame = -2 Query: 448 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 269 A+ IA+ + +V+++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED FLPGELI Sbjct: 1117 AQEAIAKLQHRMVSEVQNVYKSQGVAIDDKHIEVIVRQMTSKVRI-EDAGDTTFLPGELI 1175 Query: 268 GLLRAERAGRALD----ESIYYRAILLGITRA 185 L + E +A+ + +LLGIT+A Sbjct: 1176 ELRQVEDTNQAISITGGAPSEFTPVLLGITKA 1207 Score = 63.2 bits (152), Expect(2) = 1e-25 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1209 LNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIG 1249 Score = 43.5 bits (101), Expect = 6e-04 Identities = 15/37 (40%), Positives = 28/37 (75%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 548 G+++ +GD L ++E+ ++ DI QGLP++E++ EAR Sbjct: 991 GDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEAR 1027
>RPOC2_NEPOL (Q9TL04) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1463 Score = 78.2 bits (191), Expect(2) = 1e-25 Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 3/152 (1%) Frame = -2 Query: 631 LVTFIYEKSRSSDITQGLPKVEQIFEAR---SIDSLSPNLERRIEDWNERIPRILGVPWG 461 L +Y K+++ DI QGLPK+E+I EAR + + NL+ ++ + + L + Sbjct: 1146 LAHLLYFKTKTGDIVQGLPKIEEILEARRKKGNEIIRSNLQDFVQQFYQDN---LDEGFS 1202 Query: 460 FLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLP 281 + T+ ++ ++ ++Q VYRSQGVQI ++H+EII ++TS+V V E LP Sbjct: 1203 RKYASTRTMRAMQVLILRRVQLVYRSQGVQISDKHLEIISLRMTSRVLV-EKAYGTGILP 1261 Query: 280 GELIGLLRAERAGRALDESIYYRAILLGITRA 185 GE+I RA+ + I Y I+LGIT+A Sbjct: 1262 GEIIEKRRADMLNQGRTR-IRYCPIVLGITKA 1292 Score = 58.2 bits (139), Expect(2) = 1e-25 Identities = 27/41 (65%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+ FIS ASFQET RVL +A L+G+ DWL GLKENV+ G Sbjct: 1294 LTTKGFISSASFQETTRVLTQAVLQGKSDWLLGLKENVILG 1334
>RPOC2_SYNY3 (P73334) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1317 Score = 73.2 bits (178), Expect(2) = 1e-25 Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 4/81 (4%) Frame = -2 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 236 LVN++Q VY+SQGV I ++HIE+I+RQ+T+KVR+ +DG LPGEL+ L + E+ A Sbjct: 1093 LVNEVQTVYQSQGVDISDKHIEVIVRQMTAKVRI-DDGGDTTMLPGELVELRQVEQVNEA 1151 Query: 235 L----DESIYYRAILLGITRA 185 + Y +LLGIT+A Sbjct: 1152 MGITGSAPARYTPVLLGITKA 1172 Score = 63.2 bits (152), Expect(2) = 1e-25 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1174 LNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIG 1214 Score = 48.1 bits (113), Expect = 2e-05 Identities = 18/45 (40%), Positives = 34/45 (75%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 548 GA ++ G+++ +GD LV ++E++++ DI QGLP++E++ EAR Sbjct: 949 GAVLHIEDGDLVQRGDNLVLLVFERAKTGDIVQGLPRIEELLEAR 993
>RPOC2_MESVI (Q9MUS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1223 Score = 115 bits (287), Expect = 2e-25 Identities = 66/181 (36%), Positives = 102/181 (56%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRI 479 G+ + GD LV I+E+S++ DI QGLP++E++ EAR L P L + D + Sbjct: 972 GDFVKSGDTLVMLIFEQSKTGDIVQGLPRIEELLEARRTKGLKP-LPNNLHDLLQSFFDE 1030 Query: 478 LGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGM 299 +G A+ + + ++ LVN++Q VY++QGV I ++HIE+I+RQ+TSKV + E+G Sbjct: 1031 ATEKYGIQKAAKKSFEKLQLFLVNEVQSVYKAQGVHISDKHIEVIVRQMTSKVMI-EEGG 1089 Query: 298 SNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRAXPEYPKFHI*SKFSRNCSSFSK 119 LPGELI L R E R + Y+ I+LGIT+A F + F +K Sbjct: 1090 DTTLLPGELIELHRIENMNRNVSVHAKYKPIVLGITKASLNTESFISAASFQETTRVLTK 1149 Query: 118 S 116 + Sbjct: 1150 A 1150 Score = 65.9 bits (159), Expect = 1e-10 Identities = 30/41 (73%), Positives = 35/41 (85%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT+SFIS ASFQET RVL KAA+ G+ DWL+GLKENV+ G Sbjct: 1129 LNTESFISAASFQETTRVLTKAAIEGKTDWLRGLKENVIIG 1169
>RPOC2_CYACA (Q9TM34) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1269 Score = 70.1 bits (170), Expect(2) = 2e-25 Identities = 36/84 (42%), Positives = 60/84 (71%), Gaps = 4/84 (4%) Frame = -2 Query: 424 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 245 R+ L+ +IQ+VY+SQ ++I+++HIE+IIRQ+TSKV + E G + +F PGEL+ + + E+ Sbjct: 1098 RLELLKEIQQVYQSQKIEINDKHIEVIIRQMTSKVLIQERGDTTLF-PGELVTINQIEKI 1156 Query: 244 GRAL----DESIYYRAILLGITRA 185 A+ + Y+ +LLGIT+A Sbjct: 1157 NSAIIAVNKKEAKYKPVLLGITKA 1180 Score = 65.9 bits (159), Expect(2) = 2e-25 Identities = 29/41 (70%), Positives = 35/41 (85%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT SFIS ASFQET R+L +AA+ G++DWLKGLKENV+ G Sbjct: 1182 LNTDSFISAASFQETTRILTEAAIEGKVDWLKGLKENVIIG 1222 Score = 48.9 bits (115), Expect = 1e-05 Identities = 19/45 (42%), Positives = 33/45 (73%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 548 G ++ ++GE++ KGD L +++K ++ DI QGLP++E+I EAR Sbjct: 957 GTLIHVNHGELIRKGDYLALLVFDKIKTGDIIQGLPRIEEILEAR 1001
>RPOC2_SYNPX (Q7U8K2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1364 Score = 72.4 bits (176), Expect(2) = 2e-25 Identities = 48/117 (41%), Positives = 65/117 (55%), Gaps = 4/117 (3%) Frame = -2 Query: 523 LERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII 344 LE ED R P + A+ IA + LV ++Q VY+SQGV I ++HIE+I Sbjct: 1098 LECFFEDLRSRKP--------LMDAAQEAIANLQHRLVTEVQNVYKSQGVSIDDKHIEVI 1149 Query: 343 IRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 +RQ+TSKVRV ED LPGELI L + E +A+ + +LLGIT+A Sbjct: 1150 VRQMTSKVRV-EDAGDTTLLPGELIELRQVEDTNQAMAITGGAPAEFTPVLLGITKA 1205 Score = 63.2 bits (152), Expect(2) = 2e-25 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1207 LNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIG 1247 Score = 43.5 bits (101), Expect = 6e-04 Identities = 15/37 (40%), Positives = 28/37 (75%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 548 G+++ +GD L ++E+ ++ DI QGLP++E++ EAR Sbjct: 989 GDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEAR 1025
>RPOC2_PROMM (Q7V5P3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1374 Score = 71.6 bits (174), Expect(2) = 4e-25 Identities = 41/92 (44%), Positives = 59/92 (64%), Gaps = 4/92 (4%) Frame = -2 Query: 448 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 269 A+ IA+ + LV ++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED LPGELI Sbjct: 1123 AQEAIAKLQHRLVTEVQNVYKSQGVSIDDKHIEVIVRQMTSKVRI-EDAGDTTLLPGELI 1181 Query: 268 GLLRAERAGRAL----DESIYYRAILLGITRA 185 L + E +A+ + +LLGIT+A Sbjct: 1182 ELRQVEDTNQAMAITGGAPSEFTPVLLGITKA 1213 Score = 63.2 bits (152), Expect(2) = 4e-25 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1215 LNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIG 1255 Score = 43.5 bits (101), Expect = 6e-04 Identities = 15/37 (40%), Positives = 28/37 (75%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 548 G+++ +GD L ++E+ ++ DI QGLP++E++ EAR Sbjct: 997 GDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEAR 1033
>RPOC2_ASTLO (P58132) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 817 Score = 76.6 bits (187), Expect(3) = 4e-24 Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 6/162 (3%) Frame = -2 Query: 652 ILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS--IDSLSPNLERRIED----WNER 491 I+ K L + +K ++ DI QGL ++E++FEA+ I + NL ++D +N++ Sbjct: 613 IMKKNALLYKAVTKKEKNKDIIQGLVEIEKLFEAKKSFIIDKTKNLHEILKDLFVNYNKK 672 Query: 490 IPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVS 311 + I Q I + +IQ +Y+ QG+ I N+HIEIII+Q+TSKV + Sbjct: 673 YNNSTSTR------KSIEIIQKYI--LEEIQSIYKEQGINISNKHIEIIIKQMTSKVIIK 724 Query: 310 EDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRA 185 G ++ F+ GE+ + + + + I Y ILLGIT++ Sbjct: 725 NAG-NSPFIVGEICNINSIDNLNKNYEHKIIYEPILLGITKS 765 Score = 53.1 bits (126), Expect(3) = 4e-24 Identities = 24/41 (58%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L TQSFIS+ +FQE+ + L KAA+ +IDWL GLKEN++ G Sbjct: 767 LYTQSFISQITFQESIKSLIKAAIENKIDWLYGLKENLILG 807 Score = 21.6 bits (44), Expect(3) = 4e-24 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = -1 Query: 77 KKT*XLGGIIPVGTG 33 K+ LG +IP+GTG Sbjct: 801 KENLILGNLIPIGTG 815
>RPOC_THETN (Q8R7U7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1183 Score = 77.8 bits (190), Expect(2) = 4e-24 Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 43/180 (23%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS---------------IDSLSPNLERRIEDWNERIPRILGVPWG 461 DITQGLP+VE++FEAR I+ E + D I + +P+G Sbjct: 923 DITQGLPRVEELFEARKPKGLAVITEISGVVRINESKKRREITVVDEENNISKTYLIPYG 982 Query: 460 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 353 + G ELT I + L+ ++QKVYR QGV+I+++HI Sbjct: 983 SRLKVRDGQWVQAGDELTEGSVNPHDLLKIKGIYAVQSYLLQEVQKVYRLQGVEINDKHI 1042 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-RALDESI---YYRAILLGITRA 185 EIIIRQ+ KV+V + G +++ LPGELI + + E +A+++ + R LLGIT+A Sbjct: 1043 EIIIRQMMKKVKVEDPGDTSM-LPGELIDMFKFEEENKKAIEKGLRPATGRRALLGITKA 1101 Score = 53.5 bits (127), Expect(2) = 4e-24 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G++D L GLKENV+ G Sbjct: 1103 LATDSFLSAASFQETTRVLTDAAIKGKVDPLIGLKENVIIG 1143
>RPOC_METCA (Q60A05) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 73.2 bits (178), Expect(2) = 7e-24 Identities = 66/209 (31%), Positives = 97/209 (46%), Gaps = 43/209 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 518 GA + G+++ GD L E S++ DIT GLP+V +FEAR + E Sbjct: 1104 GAIIGIRDGDLVEVGDVLARIPQESSKTRDITGGLPRVADLFEARKTKDPAILAEATGTV 1163 Query: 517 ---------RRI-------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS-------- 416 RR+ E +P R + V G + TIA+ ++ Sbjct: 1164 SFGKETKGKRRLIITDASGEQHEVMVPKWRNITVFEGEHVEQGETIAEGELTPHDILRLR 1223 Query: 415 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 260 LV +IQ VYR QGV+I+++HIE+IIRQ+ KV +++ G S+ FL GE + Sbjct: 1224 GTAELASYLVKEIQDVYRLQGVKINDKHIEVIIRQMLRKVEITDPGDSS-FLRGEQVDRS 1282 Query: 259 RAERAGRALDES----IYYRAILLGITRA 185 R L+E Y +LLGIT+A Sbjct: 1283 RLLEENDRLEEEGKVPACYEPVLLGITKA 1311 Score = 57.4 bits (137), Expect(2) = 7e-24 Identities = 28/41 (68%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SFIS ASFQET RVL +AA+RG D L+GLKENV+ G Sbjct: 1313 LSTESFISAASFQETTRVLTEAAIRGSTDRLQGLKENVIVG 1353
>RPOC2_SYNP6 (Q5MZ21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1318 Score = 66.6 bits (161), Expect(2) = 1e-23 Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%) Frame = -2 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 236 LVN++Q VY+SQG+ I ++HIE+I+RQ+TSKVR+ +DG + LPGEL L + Sbjct: 1106 LVNEVQSVYQSQGIDISDKHIEVIVRQMTSKVRI-DDGGDTIMLPGELHELREVYNSNNT 1164 Query: 235 LD----ESIYYRAILLGITRA 185 + + +LLGIT+A Sbjct: 1165 MALTGMAPAQFTPVLLGITKA 1185 Score = 63.2 bits (152), Expect(2) = 1e-23 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1187 LNTNSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIG 1227 Score = 43.5 bits (101), Expect = 6e-04 Identities = 17/45 (37%), Positives = 32/45 (71%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 548 GA ++ ++ +GD LV ++E++++ DI QGLP++E++ EAR Sbjct: 961 GAVLHVEDKGLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEAR 1005
>RPOC_CLOPE (Q93R87) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1178 Score = 74.3 bits (181), Expect(2) = 2e-23 Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 42/180 (23%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNER----------------IP-- 485 +DITQGLP+VE++FEAR L+ E RIE+ ++ IP Sbjct: 924 ADITQGLPRVEELFEARKPKGLAIVSEVAGTVRIEETKKKRTVYVVTDSGEEYSYDIPFG 983 Query: 484 RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHI 353 L V G IGA I + ++ L++++QKVYR QGV I+++H+ Sbjct: 984 SRLKVKDGIAIGAGDEITEGSVNPHDIMSIKGVDGAREYLLSEVQKVYRLQGVDINDKHL 1043 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLL----RAERAGRALDESIYYRAILLGITRA 185 E+++RQ+T K++V+E G +N+ LPG +I + ER E +LLGIT+A Sbjct: 1044 EVVVRQMTRKIKVTEQGDTNL-LPGVMIDMFDFRAENERVESFGGEKAQGDIVLLGITKA 1102 Score = 54.3 bits (129), Expect(2) = 2e-23 Identities = 27/41 (65%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ID L GLKENV+ G Sbjct: 1104 LATDSFLSAASFQETTRVLTDAAIKGKIDPLVGLKENVIIG 1144
>RPOC_LACLA (Q9CEN7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 73.9 bits (180), Expect(2) = 3e-23 Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 48/194 (24%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI------------- 479 SSDITQGLP+V++IFEAR+ I ++ +E +ED R I Sbjct: 947 SSDITQGLPRVQEIFEARNPKGEAIITEVTGTVESIVEDPATRTREITVKGKTDTRSYTV 1006 Query: 478 -----LGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHN 362 L V G I + Q I L+ ++QK YRSQGV+I + Sbjct: 1007 GMADVLMVEEGEFIHRGAPLIQGSIEPKHLLQVRDALSVETYLLGEVQKTYRSQGVEIGD 1066 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY--------RAI 206 +HIE+++RQ+ KVRV ++G +++ LPG L+ + E AL+E+ R + Sbjct: 1067 KHIEVMVRQMLRKVRVMDNGSTDI-LPGTLMDISDFE----ALNETALLNGEMPATGRPV 1121 Query: 205 LLGITRAXPEYPKF 164 L+GIT+A E F Sbjct: 1122 LMGITKASLETNSF 1135 Score = 54.3 bits (129), Expect(2) = 3e-23 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1130 LETNSFLSAASFQETTRVLTDAAIRGKEDHLLGLKENVIIG 1170
>RPOC_PELUB (Q4FLL3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1389 Score = 68.2 bits (165), Expect(2) = 3e-22 Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 43/208 (20%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------------- 518 G+ ++ GD + E +++ DIT GLP+V ++FEAR + E Sbjct: 1105 GQKIFAGDIIARLPKETTKTKDITGGLPRVAELFEARKAKDSAIIAENDGQVLFGKEVRG 1164 Query: 517 -RRI-------EDWNERIPR------------------ILGVPWGFLIGAELTIAQSRIS 416 +RI E N IP+ + G P I L I Sbjct: 1165 KQRISIQPDNGEPSNYLIPKGKHINFNQGEKIKKGEYLLDGQPLPHDILRILGIKDLTEY 1224 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 236 VN++Q+VYR QGV I+++HIE I+RQ+ KV + E G S+ +LPGE+I ++ + Sbjct: 1225 FVNQVQEVYRLQGVIINDKHIETILRQMLKKVEIKESGDSS-YLPGEMIDRIKFDNTNEK 1283 Query: 235 L----DESIYYRAILLGITRAXPEYPKF 164 L +L+GIT+A + F Sbjct: 1284 LVAEGKNPASGERVLMGITKASLQTESF 1311 Score = 57.0 bits (136), Expect(2) = 3e-22 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL AA++G++D L GLKENV+ G Sbjct: 1306 LQTESFISAASFQETTRVLTDAAIKGKVDPLNGLKENVIVG 1346
>RPOC_BACHK (Q6HPR5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 72.4 bits (176), Expect(2) = 3e-22 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 43/187 (22%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI------PRILGVPWG 461 DITQGLP++++IFEAR+ ID + + ++D E + R +P+G Sbjct: 948 DITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEVEARTYAIPYG 1006 Query: 460 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 353 + G ELT I + L+ ++QKVYR QGV+I ++H+ Sbjct: 1007 ARLKVIPGQKISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHV 1066 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+A Sbjct: 1067 EVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKA 1125 Query: 184 XPEYPKF 164 E F Sbjct: 1126 SLETDSF 1132 Score = 52.8 bits (125), Expect(2) = 3e-22 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1167
>RPOC_BACCZ (Q63H97) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 72.4 bits (176), Expect(2) = 3e-22 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 43/187 (22%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI------PRILGVPWG 461 DITQGLP++++IFEAR+ ID + + ++D E + R +P+G Sbjct: 948 DITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEVEARTYAIPYG 1006 Query: 460 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 353 + G ELT I + L+ ++QKVYR QGV+I ++H+ Sbjct: 1007 ARLKVIPGQKISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHV 1066 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+A Sbjct: 1067 EVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKA 1125 Query: 184 XPEYPKF 164 E F Sbjct: 1126 SLETDSF 1132 Score = 52.8 bits (125), Expect(2) = 3e-22 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1167
>RPOC_BACCR (Q81J47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 72.4 bits (176), Expect(2) = 3e-22 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 43/187 (22%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI------PRILGVPWG 461 DITQGLP++++IFEAR+ ID + + ++D E + R +P+G Sbjct: 948 DITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEVEARTYAIPYG 1006 Query: 460 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 353 + G ELT I + L+ ++QKVYR QGV+I ++H+ Sbjct: 1007 ARLKVTPGQPISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHV 1066 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+A Sbjct: 1067 EVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKA 1125 Query: 184 XPEYPKF 164 E F Sbjct: 1126 SLETDSF 1132 Score = 52.8 bits (125), Expect(2) = 3e-22 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1167
>RPOC_BACC1 (Q73FA3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 72.4 bits (176), Expect(2) = 3e-22 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 43/187 (22%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI------PRILGVPWG 461 DITQGLP++++IFEAR+ ID + + ++D E + R +P+G Sbjct: 948 DITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEVETRTYAIPYG 1006 Query: 460 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 353 + G ELT I + L+ ++QKVYR QGV+I ++H+ Sbjct: 1007 ARLKVIPGQQISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHV 1066 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+A Sbjct: 1067 EVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKA 1125 Query: 184 XPEYPKF 164 E F Sbjct: 1126 SLETDSF 1132 Score = 52.8 bits (125), Expect(2) = 3e-22 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1167
>RPOC_BACAN (P77819) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 72.4 bits (176), Expect(2) = 3e-22 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 43/187 (22%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI------PRILGVPWG 461 DITQGLP++++IFEAR+ ID + + ++D E + R +P+G Sbjct: 948 DITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEVEARTYAIPYG 1006 Query: 460 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 353 + G ELT I + L+ ++QKVYR QGV+I ++H+ Sbjct: 1007 ARLKVIPGQKISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHV 1066 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+A Sbjct: 1067 EVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKA 1125 Query: 184 XPEYPKF 164 E F Sbjct: 1126 SLETDSF 1132 Score = 52.8 bits (125), Expect(2) = 3e-22 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1167
>RPOC_PSEAE (Q9HWC9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 67.4 bits (163), Expect(2) = 3e-22 Identities = 66/209 (31%), Positives = 98/209 (46%), Gaps = 44/209 (21%) Frame = -2 Query: 679 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL- 521 A VN G + GD + E S++ DIT GLP+V +FEAR + +S + Sbjct: 1105 ALVNLTDGAKVSIGDVVARIPQETSKTRDITGGLPRVADLFEARRPKEPSILAEISGTIS 1164 Query: 520 -------ERRI--------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS-------- 416 +RR+ + + E IP R L V G + I+ + Sbjct: 1165 FGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSNPHDILRLL 1224 Query: 415 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 260 +VN+IQ VYR QGV+I+++HIE I+RQ+ KV VSE G S+ F+ G+ + L Sbjct: 1225 GVSSLAKYIVNEIQDVYRLQGVKINDKHIETILRQMLRKVEVSESGDSS-FIKGDQVELT 1283 Query: 259 RA----ERAGRALDESIYYRAILLGITRA 185 + E+ G Y +LLGIT+A Sbjct: 1284 QVLEENEQLGTEDKFPAKYERVLLGITKA 1312 Score = 57.4 bits (137), Expect(2) = 3e-22 Identities = 28/41 (68%), Positives = 35/41 (85%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1314 LSTESFISAASFQETTRVLTEAAVTGKRDFLRGLKENVVVG 1354
>RPOC_BACSK (Q5WLR9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 71.6 bits (174), Expect(2) = 5e-22 Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 41/185 (22%) Frame = -2 Query: 595 DITQGLPKVEQIFEARSI-------------------DSLSPNLERRIEDWNERIP--RI 479 DITQGLP+++++FEAR+ D ++ +E N IP Sbjct: 948 DITQGLPRIQELFEARNPKGQAVITEIDGDVVDVRDGDKREVTVQSELETKNYSIPYGSR 1007 Query: 478 LGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHIEI 347 L V G + A T+ + I L+ ++QKVYR QGV+I ++H+E+ Sbjct: 1008 LKVAVGDKVVAGQTLTEGSIDPKELLKVTGMGGVQEYLLREVQKVYRLQGVEIGDKHVEV 1067 Query: 346 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGITRAXP 179 ++RQ+ KVRV + G + + LPG L+ + R A + + S R +LLGIT+A Sbjct: 1068 MVRQMLRKVRVVDAGDTGI-LPGSLVEIQRFNEANKKVLLSNMRPATGRPVLLGITKASL 1126 Query: 178 EYPKF 164 E F Sbjct: 1127 ETDSF 1131 Score = 52.8 bits (125), Expect(2) = 5e-22 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1126 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1166
>RPOC_CLOAB (Q97EH0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1182 Score = 73.6 bits (179), Expect(2) = 5e-22 Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 42/180 (23%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNER----------------IP-- 485 SDITQGLP+VE++FEAR L+ E RIE+ ++ IP Sbjct: 923 SDITQGLPRVEELFEARKPKGLAIVSEVSGTVRIEETKKKRIVFIATESGEEVSYDIPFG 982 Query: 484 RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHI 353 L V G IGA I + ++ L++++QKVYR QGV I+++H+ Sbjct: 983 SSLKVKNGETIGAGDEITEGSVNPHDIIRIKGVNAVKNYLLSEVQKVYRLQGVDINDKHL 1042 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGITRA 185 E++IRQ+T KV+V + G + + LPG +I + + ++E+ R LLGIT+A Sbjct: 1043 EVVIRQMTRKVKVEDSGDTEL-LPGTMIDIFDFRDENKKVEENGGRPAQARVSLLGITKA 1101 Score = 50.8 bits (120), Expect(2) = 5e-22 Identities = 26/41 (63%), Positives = 30/41 (73%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV G Sbjct: 1103 LATDSFLSAASFQETTRVLTDAAIKGKSDPLVGLKENVTIG 1143
>RPOC_BRUSU (Q8G070) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 68.6 bits (166), Expect(2) = 6e-22 Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 48/207 (23%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SIDS---------------L 533 GD + E +++ DIT GLP+V ++FEAR ID + Sbjct: 1112 GDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTVRFGRDYKNKRRIII 1171 Query: 532 SPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS--------------------L 413 PN + IE IP+ G P+ G + + + L Sbjct: 1172 EPN-DDTIEPVEYLIPK--GKPFHLQDGDVIEKGEYILDGNPAPHDILAIKGVEALASYL 1228 Query: 412 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL 233 VN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E L Sbjct: 1229 VNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINERL 1287 Query: 232 DESIYY----RAILLGITRAXPEYPKF 164 E +LLGIT+A + P F Sbjct: 1288 IEEGKKPGSGNPVLLGITKASLQTPSF 1314 Score = 55.5 bits (132), Expect(2) = 6e-22 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SFIS ASFQET RVL +AA+ G++D L+GLKENV+ G Sbjct: 1309 LQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENVIVG 1349
>RPOC_BRUME (Q8YHP7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 68.6 bits (166), Expect(2) = 6e-22 Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 48/207 (23%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SIDS---------------L 533 GD + E +++ DIT GLP+V ++FEAR ID + Sbjct: 1112 GDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTVRFGRDYKNKRRIII 1171 Query: 532 SPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS--------------------L 413 PN + IE IP+ G P+ G + + + L Sbjct: 1172 EPN-DDTIEPVEYLIPK--GKPFHLQDGDVIEKGEYILDGNPAPHDILAIKGVEALASYL 1228 Query: 412 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL 233 VN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E L Sbjct: 1229 VNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINERL 1287 Query: 232 DESIYY----RAILLGITRAXPEYPKF 164 E +LLGIT+A + P F Sbjct: 1288 IEEGKKPGSGNPVLLGITKASLQTPSF 1314 Score = 55.5 bits (132), Expect(2) = 6e-22 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SFIS ASFQET RVL +AA+ G++D L+GLKENV+ G Sbjct: 1309 LQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENVIVG 1349
>RPOC_BRUAB (Q57CP9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 68.6 bits (166), Expect(2) = 6e-22 Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 48/207 (23%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SIDS---------------L 533 GD + E +++ DIT GLP+V ++FEAR ID + Sbjct: 1112 GDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTVRFGRDYKNKRRIII 1171 Query: 532 SPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS--------------------L 413 PN + IE IP+ G P+ G + + + L Sbjct: 1172 EPN-DDTIEPVEYLIPK--GKPFHLQDGDVIEKGEYILDGNPAPHDILAIKGVEALASYL 1228 Query: 412 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL 233 VN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E L Sbjct: 1229 VNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINERL 1287 Query: 232 DESIYY----RAILLGITRAXPEYPKF 164 E +LLGIT+A + P F Sbjct: 1288 IEEGKKPGSGNPVLLGITKASLQTPSF 1314 Score = 55.5 bits (132), Expect(2) = 6e-22 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SFIS ASFQET RVL +AA+ G++D L+GLKENV+ G Sbjct: 1309 LQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENVIVG 1349
>RPOC_PSEPU (P19176) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 66.2 bits (160), Expect(2) = 6e-22 Identities = 65/195 (33%), Positives = 92/195 (47%), Gaps = 43/195 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 509 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 E + E IP R L V G + I+ + N+I Sbjct: 1178 TPTDGSEPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPDDILRLLGVSALGKYIDNEI 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA--ERAGRALDE 227 Q VYR QGV+I+++HIE I+RQ+ KVR+SE G S+ F+ G+ + A ERA + D+ Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVRISESGDSS-FIKGDQMEYPGAGRERASASEDK 1296 Query: 226 SI-YYRAILLGITRA 185 I + +LLGIT+A Sbjct: 1297 FISKFTRVLLGITKA 1311 Score = 57.8 bits (138), Expect(2) = 6e-22 Identities = 28/41 (68%), Positives = 35/41 (85%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1313 LSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1353
>RPOC_ZYMMO (Q5NPK4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 66.2 bits (160), Expect(2) = 6e-22 Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 46/219 (21%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL 521 G ++ G+ + G L E +++ DIT GLP+V ++FEAR I +S + Sbjct: 1088 GTVISVDDGQEVLAGTVLARVSRESAKTRDITGGLPRVAELFEARKPKENAIIAKVSGRV 1147 Query: 520 ER------------RIEDWNERIPRILGVPWGFLIGAE---------------------- 443 E R +D +E I + VP +I A+ Sbjct: 1148 EFGKDYKAKRKVIIRPDDGSEPIEYL--VPKSKVIDAQEGDHVKRGDNLISGSPDPHDIL 1205 Query: 442 --LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 269 L + LV++IQ+VYR QGV+I+++HIE I+RQ+ KV ++ G ++FLPGE + Sbjct: 1206 EVLGVEALAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLLKVEITHAG-DSIFLPGEQV 1264 Query: 268 GLLRAERAGRALD----ESIYYRAILLGITRAXPEYPKF 164 E L+ E ILLGIT+A + F Sbjct: 1265 EKEDFEAVNAKLESQGQEPAQATPILLGITKASLQTRSF 1303 Score = 57.8 bits (138), Expect(2) = 6e-22 Identities = 28/41 (68%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA++G+ID L GLKENV+ G Sbjct: 1298 LQTRSFISAASFQETTRVLTEAAVQGKIDTLSGLKENVIVG 1338
>RPOC_BACHD (Q9Z9M1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 70.5 bits (171), Expect(2) = 1e-21 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 41/185 (22%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS-------------IDSLSPNLERRIEDWNERIPRILGVPWGFL 455 DITQGLP+++++FEAR+ + +++ +R I E + +P+G Sbjct: 948 DITQGLPRIQELFEARNPKGQAVITEIEGEVTNINEADKREITVKGEMETKTYSIPYGAR 1007 Query: 454 IGAEL--------TIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHIEI 347 I EL ++ + I L+ ++QKVYR QGV+I ++H+E+ Sbjct: 1008 IKVELGEQVVPGQSLTEGSIDPKELLKVQGMTGVQEYLLREVQKVYRMQGVEIGDKHVEV 1067 Query: 346 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRAXP 179 ++RQ+ K+RV + G + V LPG LI + + + R +LLGIT+A Sbjct: 1068 MVRQMLRKIRVIDAGDTEV-LPGSLIEIQHFNDENKKVLLSGKRPATGRPVLLGITKASL 1126 Query: 178 EYPKF 164 E F Sbjct: 1127 ETDSF 1131 Score = 52.8 bits (125), Expect(2) = 1e-21 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1126 LETDSFLSAASFQETTRVLTDAAIKGKRDELVGLKENVIIG 1166
>RPOC_FUSNN (Q8RHI7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1319 Score = 64.7 bits (156), Expect(2) = 1e-21 Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 46/212 (21%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS-------------I 542 GA + G + KGD + I + DIT GLP+V+++FEAR+ I Sbjct: 1039 GAYMMVRDGAKVKKGDIIAKIIKLGEGTKDITGGLPRVQELFEARNPKGKATLAEIDGRI 1098 Query: 541 DSLSP-----------NLERRIEDWNERIP--RILGVPWGFLIGAELTIAQSRIS----- 416 + L+ +LE E IP L V G I A I + IS Sbjct: 1099 EILTTKKKQMRVVNVRSLENPEEFKEYLIPMGERLVVTDGLKIKAGDKITEGAISPYDVL 1158 Query: 415 -----------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 269 ++ +Q+VYR QGV ++++HIEII++Q+ KVR+ + G S +FL E+I Sbjct: 1159 NIKGLVAAEQFILESVQQVYRDQGVTVNDKHIEIIVKQMFRKVRIIDSGAS-LFLEDEVI 1217 Query: 268 GLLRAERAGRALDES----IYYRAILLGITRA 185 + + L+E I Y ++ GIT+A Sbjct: 1218 EKRVVDLENKKLEEQGKALIKYEPVIQGITKA 1249 Score = 58.2 bits (139), Expect(2) = 1e-21 Identities = 26/41 (63%), Positives = 35/41 (85%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 +NT SFIS ASFQET +VL+ AA+ G++D+L+GLKENV+ G Sbjct: 1251 VNTGSFISAASFQETTKVLSNAAIEGKVDYLEGLKENVILG 1291
>RPOC2_EMIHU (Q4G3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1267 Score = 61.6 bits (148), Expect(2) = 1e-21 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 7/94 (7%) Frame = -2 Query: 445 ELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 266 +L+ ++ L+ +IQ+ YRSQGV I ++H+E+I++Q+TSKV + ED + FLPGE++ Sbjct: 1087 KLSFKLLQLFLIGEIQRTYRSQGVDIADKHVELIVKQMTSKVCI-EDSGTTTFLPGEVLN 1145 Query: 265 L-------LRAERAGRALDESIYYRAILLGITRA 185 L AE G Y +LLGIT+A Sbjct: 1146 FQKMADIALVAENKGEIPPS---YVPLLLGITKA 1176 Score = 61.2 bits (147), Expect(2) = 1e-21 Identities = 29/41 (70%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LN+ SFIS ASFQET RVL +AA+ GR DWL GLKENV+ G Sbjct: 1178 LNSDSFISAASFQETTRVLTEAAIEGRKDWLTGLKENVIIG 1218 Score = 45.1 bits (105), Expect = 2e-04 Identities = 19/49 (38%), Positives = 31/49 (63%) Frame = -2 Query: 688 TTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSI 542 + G ++ ++ GD L T +YE +++DI QGLPKVE++ EAR + Sbjct: 951 SAGTILHATSNNLVKAGDILATLVYETIKTTDIVQGLPKVEELLEARKV 999
>RPOC_BARHE (Q6G3X4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 65.9 bits (159), Expect(2) = 2e-21 Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 46/211 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDS------------------- 536 G + GD + E +++ DIT GLP+V ++FEAR Sbjct: 1107 GSHVKAGDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEVSGTIRFGRGYKN 1166 Query: 535 -----LSPNLERRIEDWNERIPR------------------ILGVPWGFLIGAELTIAQS 425 + PN + +E IP+ + G P I A + Sbjct: 1167 KRRIIIEPN-DETLEPVEYLIPKGKLFHFQEGDQIEKGDYILDGNPAPHDILAIKGVEAL 1225 Query: 424 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 245 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G S ++PG+ + + + Sbjct: 1226 ASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDSG-YIPGDHVDRIELDEI 1284 Query: 244 GRAL----DESIYYRAILLGITRAXPEYPKF 164 L ILLGIT+A + P F Sbjct: 1285 NDNLLAEGKRPASGNPILLGITKASLQTPSF 1315 Score = 56.6 bits (135), Expect(2) = 2e-21 Identities = 28/41 (68%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SFIS ASFQET RVL +AA+ G+ID L+GLKENV+ G Sbjct: 1310 LQTPSFISAASFQETTRVLTEAAVSGKIDTLQGLKENVIVG 1350
>RPOC_TROWT (Q820D6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 73.2 bits (178), Expect(2) = 2e-21 Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 43/180 (23%) Frame = -2 Query: 595 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRIL-------GVPWGFLIG 449 DITQGLP+V+++FEAR+ + +P E IED +R R++ + L Sbjct: 1001 DITQGLPRVQELFEARTPRAAAPIAEADGTVSIED-GDRARRLILKSDNNEEFSYTVLKR 1059 Query: 448 AELTIAQ-SRISL---------------------------VNKIQKVYRSQGVQIHNRHI 353 A+L + SR+SL VN +Q+VYRSQGV IHN+HI Sbjct: 1060 AQLRVKDGSRVSLGDQLVEGSLDPKEVLRVKGIRAVQEYLVNGVQQVYRSQGVPIHNKHI 1119 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD----ESIYYRAILLGITRA 185 E+I+RQ+ KV V + G +++ LPGELI R + R ++ R + GIT+A Sbjct: 1120 EVIVRQMLRKVTVVDHGDTSM-LPGELIDQSRYQELNREAQAEGRKTASARQEVTGITKA 1178 Score = 49.3 bits (116), Expect(2) = 2e-21 Identities = 25/41 (60%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+S++S ASFQET RVL +A + GR D L GLKENV+ G Sbjct: 1180 LATESWLSAASFQETTRVLTQAVISGRRDPLIGLKENVIIG 1220
>RPOC_TROW8 (Q820D9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 73.2 bits (178), Expect(2) = 2e-21 Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 43/180 (23%) Frame = -2 Query: 595 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRIL-------GVPWGFLIG 449 DITQGLP+V+++FEAR+ + +P E IED +R R++ + L Sbjct: 1001 DITQGLPRVQELFEARTPRAAAPIAEADGTVSIED-GDRARRLILKSDNNEEFSYTVLKR 1059 Query: 448 AELTIAQ-SRISL---------------------------VNKIQKVYRSQGVQIHNRHI 353 A+L + SR+SL VN +Q+VYRSQGV IHN+HI Sbjct: 1060 AQLRVKDGSRVSLGDQLVEGSLDPKEVLRVKGIRAVQEYLVNGVQQVYRSQGVPIHNKHI 1119 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD----ESIYYRAILLGITRA 185 E+I+RQ+ KV V + G +++ LPGELI R + R ++ R + GIT+A Sbjct: 1120 EVIVRQMLRKVTVVDHGDTSM-LPGELIDQSRYQELNREAQAEGRKTASARQEVTGITKA 1178 Score = 49.3 bits (116), Expect(2) = 2e-21 Identities = 25/41 (60%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+S++S ASFQET RVL +A + GR D L GLKENV+ G Sbjct: 1180 LATESWLSAASFQETTRVLTQAVISGRRDPLIGLKENVIIG 1220
>RPOC_CARHZ (Q3A9Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1152 Score = 67.8 bits (164), Expect(2) = 2e-21 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 43/180 (23%) Frame = -2 Query: 595 DITQGLPKVEQIFEAR------------SIDSLSPNLERR-IEDWNERIPRILGVPWGF- 458 DITQGLP+VE++FEAR + + N RR IE N+ P + Sbjct: 909 DITQGLPRVEELFEARRPKGQAIITEIDGVVEVRDNKGRREIEVINQETGERKVYPITYQ 968 Query: 457 -----------LIGAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 353 G ELT I +++ L+ ++QKVYR QGV+I+++HI Sbjct: 969 ARIKVQTGDKVYAGDELTEGPINPHDLIKVKGIEGAQLYLLQEVQKVYRMQGVEINDKHI 1028 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 E++IRQ+ KV++ + G +++ LPG L+ + E + + + +LLGIT+A Sbjct: 1029 EVVIRQMLRKVKIEDSGDTDL-LPGSLVDIFEFEDENAKVIAKGGKPATAKRVLLGITKA 1087 Score = 54.7 bits (130), Expect(2) = 2e-21 Identities = 26/41 (63%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL +AA++G++D L GLKENV+ G Sbjct: 1089 LATDSFLSAASFQETTRVLTEAAIKGKVDPLLGLKENVIIG 1129
>RPOC_THEFY (Q47LI6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 72.0 bits (175), Expect(3) = 2e-21 Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 44/191 (23%) Frame = -2 Query: 625 TFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRILGVPWG- 461 TF + DIT GLP+V+++FEAR ++P E RIE+ ++ +I+ VP Sbjct: 1000 TFHMGGTAGQDITHGLPRVQELFEARVPKGVAPISEVEGRVRIEE-TDKSRKIIVVPDDG 1058 Query: 460 -------------FLI--GAELTIAQSRIS--------------------LVNKIQKVYR 386 L+ G + + Q + LV+++Q+VY+ Sbjct: 1059 SDEVSYQVPMRAPLLVQDGQRVEVGQQLVQGTVNPHEILRILGPRAVQQHLVSEVQEVYK 1118 Query: 385 SQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIY 218 SQGV IH++HIEII+RQ+ +V V E G + + LPGE+I + E R + + Sbjct: 1119 SQGVSIHDKHIEIIVRQMLKRVNVLESGDTKL-LPGEMIERPKFEEINRRVVAEGGQPAS 1177 Query: 217 YRAILLGITRA 185 R +LLGIT+A Sbjct: 1178 ARPVLLGITKA 1188 Score = 48.5 bits (114), Expect(3) = 2e-21 Identities = 24/41 (58%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+S++S ASFQET RVL + A+ G+ D L GLKENV+ G Sbjct: 1190 LATESWLSAASFQETTRVLTENAIHGKSDPLLGLKENVIIG 1230 Score = 21.6 bits (44), Expect(3) = 2e-21 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = -1 Query: 77 KKT*XLGGIIPVGTGXPK 24 K+ +G +IP GTG P+ Sbjct: 1224 KENVIIGKLIPAGTGMPQ 1241
>RPOC_BARQU (Q6FZM0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 65.5 bits (158), Expect(2) = 2e-21 Identities = 58/205 (28%), Positives = 89/205 (43%), Gaps = 46/205 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDS------------------------L 533 GD + E +++ DIT GLP+V ++FEAR + Sbjct: 1113 GDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEVSGTIQFGRGYKNKRRIII 1172 Query: 532 SPNLERRIEDWNERIPR------------------ILGVPWGFLIGAELTIAQSRISLVN 407 PN + +E IP+ + G P I A + LVN Sbjct: 1173 EPN-DETLEPVEYLIPKGKLFHFQEGDQIEKGDYILDGNPAPHDILAIKGVEALASYLVN 1231 Query: 406 KIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL-- 233 +IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G S ++PG+ + + + L Sbjct: 1232 EIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDSG-YIPGDHVDRIELDEINDNLIA 1290 Query: 232 --DESIYYRAILLGITRAXPEYPKF 164 ILLGIT+A + P F Sbjct: 1291 EGKRPASGNPILLGITKASLQTPSF 1315 Score = 56.6 bits (135), Expect(2) = 2e-21 Identities = 28/41 (68%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SFIS ASFQET RVL +AA+ G+ID L+GLKENV+ G Sbjct: 1310 LQTPSFISAASFQETTRVLTEAAVSGKIDTLQGLKENVIVG 1350
>RPOC_NEIG1 (Q5F5R6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 67.0 bits (162), Expect(2) = 2e-21 Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 43/209 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------SIDSLSPNL 521 GA + G+ + KGD L S++ DIT GLP+V ++FEAR + ++ + Sbjct: 1108 GAVITVREGQEIGKGDVLARIPQASSKTRDITGGLPRVAELFEARVPKDAGMLAEITGTV 1167 Query: 520 ERRIEDWNER---IPRILGVPWGFLIGAEL--------------TIAQSRIS-------- 416 E ++ I + GV + LI E TI + Sbjct: 1168 SFGKETKGKQRLIITDVDGVAYETLISKEKQILVHDGQVVNRGETIVDGAVDPHDILRLQ 1227 Query: 415 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 266 +V ++Q+VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + Sbjct: 1228 GIEALARYIVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERG 1286 Query: 265 --LLRAERAGRALDESIYYRAILLGITRA 185 + E+A E Y ILLGIT+A Sbjct: 1287 DVMAANEKALEEGKEPARYENILLGITKA 1315 Score = 55.1 bits (131), Expect(2) = 2e-21 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1317 LSTDSFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVG 1357
>RPOC_STRCO (Q8CJT1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 74.3 bits (181), Expect(2) = 2e-21 Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 43/180 (23%) Frame = -2 Query: 595 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDW---------------------NER 491 DITQGLP+V ++FEAR+ ++P E RIE+ ++R Sbjct: 1018 DITQGLPRVVELFEARTPKGVAPISEASGRVRIEETEKTKKIVVTPDDGSDETAFPISKR 1077 Query: 490 IPRILGVPWGFLIGAELTIAQS--------------RISLVNKIQKVYRSQGVQIHNRHI 353 ++G +G +LT+ + ++ LV ++QKVY SQGV IH++HI Sbjct: 1078 ARLLVGEGDHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHI 1137 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY----RAILLGITRA 185 EIIIRQ+ +V + E G + + LPGEL+ + E R + + + R L+GIT+A Sbjct: 1138 EIIIRQMLRRVTIIESGDAEL-LPGELVERTKFETENRRVVQEGGHPASGRPQLMGITKA 1196 Score = 47.8 bits (112), Expect(2) = 2e-21 Identities = 24/41 (58%), Positives = 30/41 (73%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+S++S ASFQET RVL AA+ + D L GLKENV+ G Sbjct: 1198 LATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIG 1238
>RPOC_OCEIH (Q8ETY7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 67.8 bits (164), Expect(3) = 2e-21 Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 42/186 (22%) Frame = -2 Query: 595 DITQGLPKVEQIFEARSIDSLSPNLE--------RRIEDWNERI------PRILGVPWGF 458 DITQGLP+++++FEAR+ + E + ++D E + R VP+ Sbjct: 948 DITQGLPRIQELFEARNPKGQAVITEIDGTVLEFKEVKDKQEIVVQGEVEQRSYAVPYNA 1007 Query: 457 LI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHIE 350 + G ELT + + L+ ++Q+VYR QGV+I ++H+E Sbjct: 1008 RMKVSIGDTVEAGQELTEGSVDPKELLQIKGVEGVQDYLLKEVQRVYRMQGVEIGDKHVE 1067 Query: 349 IIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRAX 182 +++RQ+ K+RV G + V LPG L+ L + + A + E R +LLGIT+A Sbjct: 1068 VMVRQMLRKIRVVSSGDTEV-LPGSLLELHQFKEANHKVLMEEGEPATGRPVLLGITKAS 1126 Query: 181 PEYPKF 164 E F Sbjct: 1127 LETDSF 1132 Score = 52.8 bits (125), Expect(3) = 2e-21 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1167 Score = 21.2 bits (43), Expect(3) = 2e-21 Identities = 7/18 (38%), Positives = 12/18 (66%) Frame = -1 Query: 77 KKT*XLGGIIPVGTGXPK 24 K+ +G ++P GTG P+ Sbjct: 1161 KENVIIGKLVPAGTGMPQ 1178
>RPOC_COLP3 (Q47UW0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 67.0 bits (162), Expect(2) = 3e-21 Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 43/208 (20%) Frame = -2 Query: 679 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------------IDS 536 A VN G + GD L S++ DIT GLP+V +FEAR + + Sbjct: 1105 AIVNLEDGADVGVGDALARIPQASSKTRDITGGLPRVADLFEARKPKLPAILAEKTGVVA 1164 Query: 535 LSPNLERRI---------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------- 416 + ++ E + E IP R+L + G + IA S Sbjct: 1165 FGKETKGKVRLLITQPSGEVYEEMIPKTRLLNIYEGEPVIKGEVIADGPESPHDILRLRG 1224 Query: 415 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 257 +VN++Q+VYR QGV+I+++HIE+I+RQ+ K + + G + FL GE + + R Sbjct: 1225 VAPVANYIVNEVQEVYRLQGVKINDKHIEVIVRQMIRKCEILDAG-DSTFLKGEQVEVAR 1283 Query: 256 AERAGRALD----ESIYYRAILLGITRA 185 + R L+ + Y ++GIT+A Sbjct: 1284 VNISNRELEAEGKQPAEYEMQMMGITKA 1311 Score = 54.7 bits (130), Expect(2) = 3e-21 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1313 LATESFISAASFQETTRVLTEAAVAGKKDGLRGLKENVIVG 1353
>RPOC_SHEON (Q8EK73) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 67.8 bits (164), Expect(2) = 3e-21 Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 44/196 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL--------ERRI-- 509 GD L E S++ DIT GLP+V +FEAR + +S + +RR+ Sbjct: 1118 GDALARIPQESSKTRDITGGLPRVADLFEARKPKEPAILAEISGTISFGKETKGKRRLVI 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 E + E IP R L V G + IA + +VN++ Sbjct: 1178 TPADGGEQYEEMIPKWRNLNVFEGEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEV 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES- 224 Q VYR QGV+I+++HIE+IIRQ+ K ++ G S FL GE + + R + A R L E Sbjct: 1238 QDVYRLQGVKINDKHIEVIIRQMLRKCVITAAGDSE-FLEGEQVEVSRVKIANRELVEQG 1296 Query: 223 ---IYYRAILLGITRA 185 + LLGIT+A Sbjct: 1297 KVPATFERELLGITKA 1312 Score = 53.9 bits (128), Expect(2) = 3e-21 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVG 1354
>RPOC_PSEPK (Q88QP1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 63.9 bits (154), Expect(2) = 3e-21 Identities = 62/196 (31%), Positives = 90/196 (45%), Gaps = 44/196 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 509 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 E + E IP R L V G + I+ +VN+I Sbjct: 1178 TPTDGSEPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR--AERAGRALDE 227 Q VYR QGV+I+++HIE I+RQ+ KV +SE G S+ F+ G+ + L + E A ++ Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEISESGDSS-FIKGDQMELTQVLVENERLASED 1296 Query: 226 SIY--YRAILLGITRA 185 + +LLGIT+A Sbjct: 1297 KFISKFTRVLLGITKA 1312 Score = 57.8 bits (138), Expect(2) = 3e-21 Identities = 28/41 (68%), Positives = 35/41 (85%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1314 LSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1354
>RPOC_AGRT5 (Q8UE09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 67.4 bits (163), Expect(2) = 4e-21 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 45/210 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL-------- 521 G + +GD L E +++ DIT GLP+V ++FEAR I + + Sbjct: 1106 GSKVSQGDVLARSPLESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTIRLGRDYKN 1165 Query: 520 ERRI-----EDWNERIPRIL--GVPWGFLIGAELTIAQSRIS------------------ 416 +RR+ ED E + ++ G P+ G + + + Sbjct: 1166 KRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIEKGEYILDGNPAPHDILAIKGVEALA 1225 Query: 415 --LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG 242 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV +++ G S ++ G+ + + E Sbjct: 1226 SYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGDSQ-YIVGDNVDRIEMEDMN 1284 Query: 241 RALDES----IYYRAILLGITRAXPEYPKF 164 L E Y +LLGIT+A + P F Sbjct: 1285 DRLIEEGKKPAYGEPVLLGITKASLQTPSF 1314 Score = 53.9 bits (128), Expect(2) = 4e-21 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SFIS ASFQET +VL +AA+ G+ D L+GLKENV+ G Sbjct: 1309 LQTPSFISAASFQETTKVLTEAAIAGKTDTLQGLKENVIVG 1349
>RPOC_NEIMB (Q9K1J1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 66.2 bits (160), Expect(2) = 4e-21 Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 43/209 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------SIDSLSPNL 521 GA + G+ + KGD L S++ DIT GLP+V ++FEAR + ++ + Sbjct: 1108 GAVITVREGQEIGKGDVLARIPQASSKTRDITGGLPRVAELFEARVPKDAGMLAEITGTV 1167 Query: 520 ERRIEDWNER---IPRILGVPWGFLIGAEL--------------TIAQSRIS-------- 416 E ++ + + GV + LI E TI + Sbjct: 1168 SFGKETKGKQRLIVTDVDGVAYETLISKEKQILVHDGQVVNRGETIVDGAVDPHDILRLQ 1227 Query: 415 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 266 +V ++Q+VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + Sbjct: 1228 GIEALARYIVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERG 1286 Query: 265 --LLRAERAGRALDESIYYRAILLGITRA 185 + E+A E Y +LLGIT+A Sbjct: 1287 DVMAANEKALEEGKEPARYENVLLGITKA 1315 Score = 55.1 bits (131), Expect(2) = 4e-21 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1317 LSTDSFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVG 1357
>RPOC_NEIMA (Q9JX03) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 66.2 bits (160), Expect(2) = 4e-21 Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 43/209 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------SIDSLSPNL 521 GA + G+ + KGD L S++ DIT GLP+V ++FEAR + ++ + Sbjct: 1108 GAVITVREGQEIGKGDVLARIPQASSKTRDITGGLPRVAELFEARVPKDAGMLAEITGTV 1167 Query: 520 ERRIEDWNER---IPRILGVPWGFLIGAEL--------------TIAQSRIS-------- 416 E ++ + + GV + LI E TI + Sbjct: 1168 SFGKETKGKQRLIVTDVDGVAYETLISKEKQILVHDGQVVNRGETIVDGAVDPHDILRLQ 1227 Query: 415 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 266 +V ++Q+VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + Sbjct: 1228 GIEALARYIVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERG 1286 Query: 265 --LLRAERAGRALDESIYYRAILLGITRA 185 + E+A E Y +LLGIT+A Sbjct: 1287 DVMAANEKALEEGKEPARYENVLLGITKA 1315 Score = 55.1 bits (131), Expect(2) = 4e-21 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1317 LSTDSFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVG 1357
>RPOC_STRAW (Q82DQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 73.6 bits (179), Expect(2) = 4e-21 Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 44/181 (24%) Frame = -2 Query: 595 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRILGVPWG----------- 461 DITQGLP+V ++FEAR+ ++P E RIE+ E+ +I+ P Sbjct: 1018 DITQGLPRVVELFEARTPKGVAPISEASGRVRIEE-TEKTKKIVVTPDDGSDETAFPISK 1076 Query: 460 -----------FLIGAELTIAQS--------------RISLVNKIQKVYRSQGVQIHNRH 356 +G +LT+ + ++ LV ++QKVY SQGV IH++H Sbjct: 1077 RARVLVTEGEHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKH 1136 Query: 355 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY----RAILLGITR 188 IEIIIRQ+ +V + E G + + LPGEL+ + E R + + + R L+GIT+ Sbjct: 1137 IEIIIRQMLRRVTIIESGDAEL-LPGELVERSKFETENRRVVQEGGHPASGRPQLMGITK 1195 Query: 187 A 185 A Sbjct: 1196 A 1196 Score = 47.8 bits (112), Expect(2) = 4e-21 Identities = 24/41 (58%), Positives = 30/41 (73%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+S++S ASFQET RVL AA+ + D L GLKENV+ G Sbjct: 1198 LATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIG 1238
>RPOC_STRPM (Q48VR0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 67.0 bits (162), Expect(2) = 4e-21 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI-------LG---V 470 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 469 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 362 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 194 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1127 TKASLETNSF 1136 Score = 54.3 bits (129), Expect(2) = 4e-21 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1131 LETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171
>RPOC_STRP8 (Q8P2Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 67.0 bits (162), Expect(2) = 4e-21 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI-------LG---V 470 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 469 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 362 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 194 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1127 TKASLETNSF 1136 Score = 54.3 bits (129), Expect(2) = 4e-21 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1131 LETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171
>RPOC_STRP6 (Q5XE96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 67.0 bits (162), Expect(2) = 4e-21 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI-------LG---V 470 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 469 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 362 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 194 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1127 TKASLETNSF 1136 Score = 54.3 bits (129), Expect(2) = 4e-21 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1131 LETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171
>RPOC_STRP3 (Q8K8W2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 67.0 bits (162), Expect(2) = 4e-21 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI-------LG---V 470 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 469 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 362 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 194 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1127 TKASLETNSF 1136 Score = 54.3 bits (129), Expect(2) = 4e-21 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1131 LETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171
>RPOC_PSEPF (Q3K5Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 63.2 bits (152), Expect(2) = 5e-21 Identities = 63/196 (32%), Positives = 90/196 (45%), Gaps = 44/196 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 509 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPG---ELIGLLRAERAGRALD 230 Q VYR QGV+I+++HIE I+RQ+ KV +SE G S+ F+ G EL +L A D Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEISESGDSS-FIKGDQMELTHVLVENERLNAED 1296 Query: 229 ESI-YYRAILLGITRA 185 + + + +LLGIT+A Sbjct: 1297 KFVSKFTRVLLGITKA 1312 Score = 57.8 bits (138), Expect(2) = 5e-21 Identities = 28/41 (68%), Positives = 35/41 (85%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1314 LSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1354
>RPOC_STRP1 (P0C0E0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 66.6 bits (161), Expect(2) = 5e-21 Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI------------- 479 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVI 1007 Query: 478 -----LGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHN 362 + V G + + + I L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 194 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1127 TKASLETNSF 1136 Score = 54.3 bits (129), Expect(2) = 5e-21 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1131 LETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171
>RPOC_LISMO (Q8YA96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 68.2 bits (165), Expect(2) = 5e-21 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 43/187 (22%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS-------------IDSLSPNLERRIE----------DWNERIP 485 DITQGLP++++IFEAR+ + S+ +R+ E +N Sbjct: 948 DITQGLPRIQEIFEARNPKGQAIITEVGGEVVSIEEGRDRQQEITIQGTDDRRSYNIPYT 1007 Query: 484 RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHI 353 L V G ++ + + + L+ ++QKVYR QGV+I ++H+ Sbjct: 1008 ARLRVEEGTIVERGEALTEGSVDPKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHV 1067 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 E+++RQ+ K+RV + G +N+ LPG L+ + A R + R +LLGIT+A Sbjct: 1068 EVMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANREAILSGSQPATGRPVLLGITKA 1126 Query: 184 XPEYPKF 164 E F Sbjct: 1127 SLETDSF 1133 Score = 52.8 bits (125), Expect(2) = 5e-21 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1128 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVILG 1168
>RPOBC_WOLPM (Q73IW9) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2837 Score = 69.3 bits (168), Expect(2) = 6e-21 Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 51/224 (22%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SIDSLS 530 GA +N G+ ++ GD + E ++ DIT GLP+V ++FEAR ID Sbjct: 2523 GAVLNVQDGQKVHAGDVITRTPRESVKTRDITGGLPRVIELFEARRPKEHAIVSEIDGYV 2582 Query: 529 PNLER--------RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNK---------- 404 E+ I+ +E+I P +L+ + + V K Sbjct: 2583 AFSEKDRRGKRSILIKPVDEQIS-----PVEYLVSRSKHVIVNESDFVRKGDLLMDGDPD 2637 Query: 403 --------------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFL 284 IQ+VYR QGV+I N+H+E+I++Q+ KV +++ G ++L Sbjct: 2638 LHDILRVLGLEALAHYMISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPG-DTMYL 2696 Query: 283 PGELIGLLRAERAGRALDES----IYYRAILLGITRAXPEYPKF 164 GE I L +R A+ S +Y IL GITRA E F Sbjct: 2697 VGESIDKLEVDRENDAMSNSGKRPTHYLPILQGITRASLETSSF 2740 Score = 51.2 bits (121), Expect(2) = 6e-21 Identities = 26/41 (63%), Positives = 30/41 (73%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SFIS ASFQET +VL +AA G+ D L GLKENV+ G Sbjct: 2735 LETSSFISAASFQETTKVLTEAAFCGKSDPLSGLKENVIVG 2775
>RPOC_ANAMM (Q5PBG3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 69.3 bits (168), Expect(2) = 6e-21 Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 46/219 (21%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEA---------------- 551 GA +N G+ ++ GD + E ++ DIT GLP+V ++FEA Sbjct: 1093 GAVLNVQDGQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPKEHAIVSDVDGYV 1152 Query: 550 ---------------RSIDSLSPNLERRIEDWNERIPR-----------ILGVPWGFLIG 449 R +D P +E + I + G P I Sbjct: 1153 EFGKDYYRSKRRIFIRPVDKSLPAVEYLVPKGKHTIVNEGDFVHKGDLLMDGDPDQHDIL 1212 Query: 448 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 269 L ++++IQ+VYR QGV+I N+HIE+I+RQ+ KV +++ G ++L GE Sbjct: 1213 RVLGAEALASYMISEIQQVYRLQGVRIDNKHIEVILRQMLQKVEITDPG-DTMYLVGEHA 1271 Query: 268 GLLRAERAGRALDES----IYYRAILLGITRAXPEYPKF 164 G R R L+E+ + Y IL GIT+A + F Sbjct: 1272 GREEVMRLNRKLEEAGKKPVAYVPILQGITKASLDTNSF 1310 Score = 51.2 bits (121), Expect(2) = 6e-21 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET +VL +AA G+ D L GLKENV+ G Sbjct: 1305 LDTNSFISAASFQETTKVLTEAAFSGKEDPLYGLKENVIVG 1345
>RPOC_PSESM (Q889X7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 62.8 bits (151), Expect(2) = 6e-21 Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 44/196 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 509 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAERAGRAL 233 Q VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L+ ER G Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENERLGADD 1296 Query: 232 DESIYYRAILLGITRA 185 + +LLGIT+A Sbjct: 1297 KFVSKFTRVLLGITKA 1312 Score = 57.8 bits (138), Expect(2) = 6e-21 Identities = 28/41 (68%), Positives = 35/41 (85%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1314 LSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1354
>RPOC_RHILO (Q98N65) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 65.5 bits (158), Expect(2) = 6e-21 Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 4/88 (4%) Frame = -2 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 236 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++ G + ++PG+ + ++ E Sbjct: 1227 LVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVEITTQG-DSTYIPGDHVDVIELEEVNER 1285 Query: 235 LDES----IYYRAILLGITRAXPEYPKF 164 L E + +LLGIT+A + P F Sbjct: 1286 LIEDGKKPAEGQPVLLGITKASLQTPSF 1313 Score = 55.1 bits (131), Expect(2) = 6e-21 Identities = 27/41 (65%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1308 LQTPSFISAASFQETTRVLTEAAVAGKTDMLQGLKENVIVG 1348 Score = 33.9 bits (76), Expect = 0.48 Identities = 15/31 (48%), Positives = 21/31 (67%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 548 GD L E +++ DIT GLP+V ++FEAR Sbjct: 1111 GDVLARIPMESAKTKDITGGLPRVAELFEAR 1141
>RPOC_LISMF (Q724E9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 67.8 bits (164), Expect(2) = 6e-21 Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 43/187 (22%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS-------------IDSLSPNLERRIE----------DWNERIP 485 DITQGLP++++IFEAR+ + S+ +R+ E +N Sbjct: 948 DITQGLPRIQEIFEARNPKGQAIITEVGGEVVSIEEGRDRQQEITIQGTDDRRSYNIPYT 1007 Query: 484 RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHI 353 L V G ++ + + + L+ ++QKVYR QGV+I ++H+ Sbjct: 1008 ARLRVEEGTIVERGEALTEGSVDPKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHV 1067 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR----ALDESIYYRAILLGITRA 185 E+++RQ+ K+RV + G +N+ LPG L+ + A R + + R +LLGIT+A Sbjct: 1068 EVMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANRDAILSGSQPATGRPVLLGITKA 1126 Query: 184 XPEYPKF 164 E F Sbjct: 1127 SLETDSF 1133 Score = 52.8 bits (125), Expect(2) = 6e-21 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1128 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVILG 1168
>RPOC_LISIN (P77879) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 67.8 bits (164), Expect(2) = 6e-21 Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 43/187 (22%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS-------------IDSLSPNLERRIE----------DWNERIP 485 DITQGLP++++IFEAR+ + S+ +R+ E +N Sbjct: 948 DITQGLPRIQEIFEARNPKGQAIITEVGGEVVSIEEGRDRQQEITIQGTDDRRSYNIPYT 1007 Query: 484 RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHI 353 L V G ++ + + + L+ ++QKVYR QGV+I ++H+ Sbjct: 1008 ARLRVEEGSIVERGEALTEGSVDPKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHV 1067 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR----ALDESIYYRAILLGITRA 185 E+++RQ+ K+RV + G +N+ LPG L+ + A R + + R +LLGIT+A Sbjct: 1068 EVMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANRDAILSGSQPATGRPVLLGITKA 1126 Query: 184 XPEYPKF 164 E F Sbjct: 1127 SLETDSF 1133 Score = 52.8 bits (125), Expect(2) = 6e-21 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1128 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVILG 1168
>RPOC_SHEVI (Q9KW13) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 65.9 bits (159), Expect(2) = 8e-21 Identities = 67/209 (32%), Positives = 98/209 (46%), Gaps = 44/209 (21%) Frame = -2 Query: 679 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL- 521 A VN + GD L E S++ DIT GLP+V +FEAR + S + Sbjct: 1106 AIVNQDDNAEINVGDALARIPQESSKTRDITGGLPRVADLFEARKPKEPAILAEYSGTIS 1165 Query: 520 -------ERRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS 416 +RR+ + + E IP R L V G + GAE R+ Sbjct: 1166 FGKETKGKRRLLITPADGGKPYEEMIPKWRNLNVFEGEKVERGEVIADGAEAAHDILRLR 1225 Query: 415 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 260 +VN++Q VYR QGV+I+++HIE+IIRQ+ K +++ G S FL GE + Sbjct: 1226 GIHKVANYIVNEVQDVYRLQGVKINDKHIEVIIRQMLRKCLITDAGDSQ-FLAGEQAEVA 1284 Query: 259 RAERAGRALD----ESIYYRAILLGITRA 185 R + A R L+ + + LLGIT+A Sbjct: 1285 RVKIANRELEAQGKKPATFDRELLGITKA 1313 Score = 54.3 bits (129), Expect(2) = 8e-21 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1315 LATESFISAASFQETTRVLTEAAVGGKSDKLRGLKENVIVG 1355
>RPOC_LACSS (Q38UQ3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1214 Score = 67.4 bits (163), Expect(2) = 8e-21 Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 46/190 (24%) Frame = -2 Query: 595 DITQGLPKVEQIFEARSIDSLSPNLE----------------RRIEDWNERIPRILGVPW 464 DITQGLP++++IFEAR+ +++ E R I E R VP+ Sbjct: 949 DITQGLPRIQEIFEARNPKAIATITEVTGEVIAVEENPAEHTREITVQGETDTRSYSVPY 1008 Query: 463 --------GFLI--GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRH 356 G +I G ++T + + L++++QKVYR QG++I ++H Sbjct: 1009 TSNIIVSEGDMIHRGEKITGGSVDPKQLIKVRDVLSTENYLLHEVQKVYRMQGIEIGDKH 1068 Query: 355 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESI------YYRAILLGI 194 +E+++RQ+ KVRV + G + + LPG L+ + +E R D I R +LLGI Sbjct: 1069 VEVMVRQMLRKVRVMDPGDTEI-LPGTLMDI--SEFTDRNHDTLISGGVPATCRPVLLGI 1125 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1126 TKASLETNSF 1135 Score = 52.8 bits (125), Expect(2) = 8e-21 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL A++RG+ D L GLKENV+ G Sbjct: 1130 LETNSFLSAASFQETTRVLTDASIRGKSDPLLGLKENVIIG 1170
>RPOC_LACJO (Q74L94) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1224 Score = 65.5 bits (158), Expect(3) = 9e-21 Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEAR----------------SIDSLSPNLERRIEDWNERIPRILGV 470 ++DITQGLP+V+++FEAR SI+ R+I + R V Sbjct: 948 AADITQGLPRVQELFEARNPKGRATISEVTGEVTSIEEDPAEHTRQITVKGQTDTRTYDV 1007 Query: 469 PWGFLI----------GAELTIAQ--------------SRISLVNKIQKVYRSQGVQIHN 362 P+ + G +LT+ + ++++IQK YR QGV+I + Sbjct: 1008 PYTASVAVAEGDHVVRGDKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIAD 1067 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGEL--IGLLRAERAGRALDESI--YYRAILLGI 194 +H+E++ RQ+ KVR+ + G +++ LPGEL IG +A + I ++++LGI Sbjct: 1068 KHVEVMARQMLQKVRILDPGETDI-LPGELMDIGEFKARNREVIISGGIPATAQSVILGI 1126 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1127 TKAALETNSF 1136 Score = 52.4 bits (124), Expect(3) = 9e-21 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL A++RG+ D L GLKENV+ G Sbjct: 1131 LETNSFLSAASFQETTRVLTDASIRGKNDPLLGLKENVIIG 1171 Score = 21.9 bits (45), Expect(3) = 9e-21 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -1 Query: 77 KKT*XLGGIIPVGTGXP 27 K+ +G IIP GTG P Sbjct: 1165 KENVIIGKIIPAGTGMP 1181
>RPOC_PHOLL (Q7N9A3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 65.5 bits (158), Expect(2) = 1e-20 Identities = 62/202 (30%), Positives = 92/202 (45%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 518 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVSISAGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEVSGIVSFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 416 RR+ + + E IP R L V G ++ I+ S Sbjct: 1172 KRRLVISPLDGGDAYEEMIPKWRQLNVFEGEVVERGDVISDGPESPHDILRLRGVHAVTR 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 + N++Q+VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YITNEVQEVYRLQGVKINDKHIEVIVRQMLRKATIESAG-SSEFLEGEQVEYARVKVANR 1290 Query: 238 ALDE----SIYYRAILLGITRA 185 L++ + Y LLGIT+A Sbjct: 1291 KLEQEGKVAATYGRDLLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 1e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_ACIAD (Q6FF89) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1397 Score = 65.1 bits (157), Expect(2) = 1e-20 Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPN 524 GE + GD L E SR+ DIT GLP+V +FEAR S + Sbjct: 1108 GETIGVGDVLGRVPQETSRTRDITGGLPRVADLFEARKPKEHAILAEVSGIVSFGKETKG 1167 Query: 523 LERRI-------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 416 R + E + E IP R + V G + TI+ + Sbjct: 1168 KNRLVITPDDGSEIYEELIPKWRTINVFEGEHVNRGETISDGPQNPHDILRLKGEVALTN 1227 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ KV ++ DG F+ GE + +R + + Sbjct: 1228 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKVDIT-DGGDTSFIKGEQVDYIRVVQENQ 1286 Query: 238 A-LDESIY---YRAILLGITRA 185 A L ++ + + L+GIT+A Sbjct: 1287 AVLAQNKFPAKFERQLMGITKA 1308 Score = 54.7 bits (130), Expect(2) = 1e-20 Identities = 28/41 (68%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENVV G Sbjct: 1310 LSTDSFISAASFQETTRVLTEAAVTGKEDDLRGLKENVVVG 1350
>RPOC_STAHJ (Q4L3K4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 66.6 bits (161), Expect(2) = 1e-20 Identities = 57/190 (30%), Positives = 88/190 (46%), Gaps = 45/190 (23%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 500 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 499 NERIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 362 R+ +G P FL A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRLKVEVGQSVERGEVLTEGSIEPKNFLAVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGI 194 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R + +LLGI Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHSFTDANREAFKERKRPATAKPVLLGI 1127 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1128 TKASLETESF 1137 Score = 53.1 bits (126), Expect(2) = 1e-20 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1132 LETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172
>RPOC_GEOKA (Q5L404) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 67.0 bits (162), Expect(2) = 1e-20 Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 43/187 (22%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI------PRILGVPWG 461 DITQGLP+V+++FEAR+ ID ++ + ++ E + R P+ Sbjct: 948 DITQGLPRVQELFEARNPKGQAVISEIDGTVISINKTRDNQYEVVVQGEVETRTYVAPYN 1007 Query: 460 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 353 + G ELT I + L+ ++QKVYR QGV+I ++HI Sbjct: 1008 ARLKVEEGQRVERGQELTEGSVDPKQLLRVRDITSVQEYLLREVQKVYRMQGVEISDKHI 1067 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR-AERAGRALDES---IYYRAILLGITRA 185 E+++RQ+ KVRV + G ++V LPG L+ + + + +AL E R +LLGIT+A Sbjct: 1068 EVMVRQMLRKVRVIDAGDTDV-LPGTLLDVHQFTDVNAKALREGKRPATARQVLLGITKA 1126 Query: 184 XPEYPKF 164 E F Sbjct: 1127 SLETDSF 1133 Score = 52.8 bits (125), Expect(2) = 1e-20 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1128 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1168
>RPOBC_WOLTR (Q5GRY9) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2839 Score = 68.2 bits (165), Expect(2) = 1e-20 Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 46/219 (21%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SIDS-- 536 GA +N G+ ++ GD + E ++ DIT GLP+V ++FEAR ID Sbjct: 2526 GAVLNVQDGQKVHAGDVITRTPRESVKTRDITGGLPRVIELFEARRPREHAIVSEIDGHV 2585 Query: 535 LSPNLERR------IEDWNERIPRIL-------------------------GVPWGFLIG 449 + +RR I+ NE+I I G P I Sbjct: 2586 VFSEKDRRGKRSVLIKPLNEQISPIEYLVSRSKHVIVNEGDFVRKGDLLMDGDPDLHDIL 2645 Query: 448 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 269 L + ++++IQ+VYR QGV+I N+H+E+I++Q+ KV +++ G ++L GE I Sbjct: 2646 RVLGLEALAHYMISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPG-DTMYLVGESI 2704 Query: 268 GLLRAERAGRALDES----IYYRAILLGITRAXPEYPKF 164 L ++ + S Y IL GITRA E F Sbjct: 2705 DKLEVDKGNDVMSNSGKRPACYLPILQGITRASLETKSF 2743 Score = 51.2 bits (121), Expect(2) = 1e-20 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET +VL +AA G+ D L GLKENV+ G Sbjct: 2738 LETKSFISAASFQETTKVLTEAAFCGKEDPLSGLKENVIVG 2778
>RPOC_BLOPB (Q492C0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 67.4 bits (163), Expect(2) = 1e-20 Identities = 67/202 (33%), Positives = 95/202 (47%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL-------- 521 G + GD L +E S + DIT GLP+V +FEAR + +S + Sbjct: 1116 GSRIICGDILARLPHESSGTKDITGGLPRVADLFEARRPKESAILAEISGTISFGKETKG 1175 Query: 520 ERR-----IED---WNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 416 +RR IED + E IP R L V G + I+ S Sbjct: 1176 KRRLMISPIEDGDVYEEMIPKWRHLNVFEGEYVDRGDIISDGPESPHDILRLRGVHAVTR 1235 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ K V G S+ FL GE + R + A R Sbjct: 1236 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATVIRSGSSD-FLVGEQVEYSRIKIANR 1294 Query: 238 ALDE----SIYYRAILLGITRA 185 L+ I + LLGIT+A Sbjct: 1295 KLENEGKVKISFIRNLLGITKA 1316 Score = 52.0 bits (123), Expect(2) = 1e-20 Identities = 25/41 (60%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL ++++ G+ D L+GLKENV+ G Sbjct: 1318 LATESFISAASFQETTRVLTESSVAGKRDELRGLKENVIVG 1358
>RPOC_STAES (Q8CQ83) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 66.2 bits (160), Expect(2) = 1e-20 Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 45/190 (23%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARS-------------IDSLSPNLERRIE--------------DW 500 SDITQGLP++++IFEAR+ +D + +R+ E Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIIVKGANETRSYLASG 1010 Query: 499 NERIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 362 R+ +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRLKVEIGQSVERGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGI 194 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R + +LLGI Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANRDAFKHRKRPATAKPVLLGI 1127 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1128 TKASLETESF 1137 Score = 53.1 bits (126), Expect(2) = 1e-20 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1132 LETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172
>RPOC_STAEQ (Q5HRK9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 66.2 bits (160), Expect(2) = 1e-20 Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 45/190 (23%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARS-------------IDSLSPNLERRIE--------------DW 500 SDITQGLP++++IFEAR+ +D + +R+ E Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIIVKGANETRSYLASG 1010 Query: 499 NERIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 362 R+ +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRLKVEIGQSVERGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGI 194 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R + +LLGI Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANRDAFKHRKRPATAKPVLLGI 1127 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1128 TKASLETESF 1137 Score = 53.1 bits (126), Expect(2) = 1e-20 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1132 LETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172
>RPOC_STAAW (P60286) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 66.2 bits (160), Expect(2) = 1e-20 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 48/193 (24%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 500 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 499 NERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 362 RI +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYR-------AIL 203 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 202 LGITRAXPEYPKF 164 LGIT+A E F Sbjct: 1125 LGITKASLETESF 1137 Score = 53.1 bits (126), Expect(2) = 1e-20 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1132 LETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172
>RPOC_STAAS (Q6GBU4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 66.2 bits (160), Expect(2) = 1e-20 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 48/193 (24%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 500 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 499 NERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 362 RI +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYR-------AIL 203 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 202 LGITRAXPEYPKF 164 LGIT+A E F Sbjct: 1125 LGITKASLETESF 1137 Score = 53.1 bits (126), Expect(2) = 1e-20 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1132 LETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172
>RPOC_STAAR (Q6GJC5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 66.2 bits (160), Expect(2) = 1e-20 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 48/193 (24%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 500 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 499 NERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 362 RI +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYR-------AIL 203 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 202 LGITRAXPEYPKF 164 LGIT+A E F Sbjct: 1125 LGITKASLETESF 1137 Score = 53.1 bits (126), Expect(2) = 1e-20 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1132 LETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172
>RPOC_STAAN (P60285) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 66.2 bits (160), Expect(2) = 1e-20 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 48/193 (24%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 500 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 499 NERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 362 RI +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYR-------AIL 203 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 202 LGITRAXPEYPKF 164 LGIT+A E F Sbjct: 1125 LGITKASLETESF 1137 Score = 53.1 bits (126), Expect(2) = 1e-20 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1132 LETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172
>RPOC_STAAM (P60284) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 66.2 bits (160), Expect(2) = 1e-20 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 48/193 (24%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 500 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 499 NERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 362 RI +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYR-------AIL 203 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 202 LGITRAXPEYPKF 164 LGIT+A E F Sbjct: 1125 LGITKASLETESF 1137 Score = 53.1 bits (126), Expect(2) = 1e-20 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1132 LETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172
>RPOC_STAAC (Q5HID2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 66.2 bits (160), Expect(2) = 1e-20 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 48/193 (24%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 500 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 499 NERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 362 RI +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYR-------AIL 203 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 202 LGITRAXPEYPKF 164 LGIT+A E F Sbjct: 1125 LGITKASLETESF 1137 Score = 53.1 bits (126), Expect(2) = 1e-20 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1132 LETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172
>RPOC_DEIRA (Q9RVW0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1546 Score = 69.7 bits (169), Expect(2) = 2e-20 Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 44/181 (24%) Frame = -2 Query: 595 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNER-------------------IP 485 DIT GLP+V ++FEAR + + +R RIE+ ER +P Sbjct: 1268 DITMGLPRVIELFEARKPKTQAVVADRDGVIRIEEEEERYLVRIEADDEQYSSKTATKVP 1327 Query: 484 RILG--VPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNR 359 R+L V G + A I + ++ LV ++Q+VYRSQGV++H++ Sbjct: 1328 RVLRMTVKDGERVEAGQPITRGAVNPHDLLMYKDTDAAQRYLVEEVQRVYRSQGVKVHDK 1387 Query: 358 HIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES---IYYRAILLGITR 188 HIE+I+RQ+ V V+ DG L G+ + ++A AL E ++ +LLGIT+ Sbjct: 1388 HIEVIVRQMLRWVEVT-DGGDTTLLEGQTVEHWEVDQANEALAEGQTPASWKPVLLGITK 1446 Query: 187 A 185 + Sbjct: 1447 S 1447 Score = 49.3 bits (116), Expect(2) = 2e-20 Identities = 23/41 (56%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+S++S ASFQ T VL +A++RG++D L GLKENV+ G Sbjct: 1449 LTTKSWLSAASFQHTTHVLTEASMRGQVDDLIGLKENVILG 1489
>RPOC_PSEF5 (Q4K527) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 61.2 bits (147), Expect(2) = 2e-20 Identities = 60/196 (30%), Positives = 88/196 (44%), Gaps = 44/196 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 509 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAERAGRAL 233 Q VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L+ ER Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENERLSTED 1296 Query: 232 DESIYYRAILLGITRA 185 + +LLGIT+A Sbjct: 1297 KFVAKFTRVLLGITKA 1312 Score = 57.8 bits (138), Expect(2) = 2e-20 Identities = 28/41 (68%), Positives = 35/41 (85%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1314 LSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1354
>RPOC_PSEHT (Q3ILP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1390 Score = 64.7 bits (156), Expect(2) = 2e-20 Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 43/201 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPN 524 G + GD L E S++ DIT GLP+V +FEAR S + Sbjct: 1098 GTTVNPGDVLARIPQEGSKTRDITGGLPRVADLFEARKPKEPAILAEVTGTISFGKETKG 1157 Query: 523 LERRI------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS---------------- 416 +R + + + E IP R L V G + IA S Sbjct: 1158 KKRLVITPDEGDHYEEMIPKWRQLNVFEGERVSKGEVIADGPESPHDILRLRGVTHVANY 1217 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 236 +VN++Q+VYR QGV+I+++HIE IIRQ+ K + G ++ FL GE I + R A R Sbjct: 1218 IVNEVQEVYRLQGVKINDKHIETIIRQMLRKCTIMHGGDTD-FLAGEQIEVARVNIANRD 1276 Query: 235 LDES----IYYRAILLGITRA 185 L+ + L+GIT+A Sbjct: 1277 LEAQGKIPAKFEIQLMGITKA 1297 Score = 54.3 bits (129), Expect(2) = 2e-20 Identities = 27/41 (65%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL AA+ G+ D L+GLKENV+ G Sbjct: 1299 LATESFISAASFQETTRVLTDAAVNGKSDELRGLKENVIVG 1339
>RPOC_GLUOX (Q5FTX8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1439 Score = 62.0 bits (149), Expect(2) = 2e-20 Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 44/203 (21%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRIE---DWNERIPRIL 476 GD L E S++ DIT GLP+V ++FEAR ++ E RIE D+ + I+ Sbjct: 1164 GDVLARIPREGSKTRDITGGLPRVAELFEARRPKDHAIIAEGEGRIEFGKDYKSKRCVIV 1223 Query: 475 -----GVPWGFLI--GAELTIAQSRIS----------------------------LVNKI 401 G +LI G +++ + LVN+I Sbjct: 1224 KNDDTGEETQYLIPKGKHVSVQEGDFVQKGDPLVDGPRVPHDILKVMGVEALSDYLVNEI 1283 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL---- 233 Q VYR QGV+I+++HIE+I+RQ+ KV + E G + +L GE + + E + L Sbjct: 1284 QDVYRLQGVKINDKHIEVIVRQMLQKVEILEPG-DSTYLIGETVDRIEYEGENQRLMENG 1342 Query: 232 DESIYYRAILLGITRAXPEYPKF 164 D +L GIT+A + F Sbjct: 1343 DTPAKAMPVLQGITKASLQTQSF 1365 Score = 56.6 bits (135), Expect(2) = 2e-20 Identities = 28/41 (68%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L TQSFIS ASFQET RVL AA G++D L GLKENV+ G Sbjct: 1360 LQTQSFISAASFQETTRVLTDAATSGKVDTLNGLKENVIVG 1400
>RPOC_NITOC (Q3J8Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1403 Score = 63.5 bits (153), Expect(2) = 2e-20 Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 43/209 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--------------- 548 GA V+ ++ GD L E S++ DIT GLP+V +FEAR Sbjct: 1104 GAVVSVEDEAMVGVGDVLARLPQESSKTRDITGGLPRVADLFEARKPKDPAVLAEISGTV 1163 Query: 547 SIDSLSPNLERRI------EDWNERIPR------------------ILGVPWGFLIGAEL 440 S + +R I E E IP+ + G P I Sbjct: 1164 SFGKETKGKQRLIITGSDGERHEELIPKWRQVNVFEGEHVEKGEAIVDGPPVPHDILRLR 1223 Query: 439 TIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 260 + + +VN++Q+VYR QGV+I+++HIE+II Q+ KV + E G ++ FL GE I Sbjct: 1224 GVEELTYYIVNEVQEVYRLQGVKINDKHIEVIICQMLRKVEIIEPGDTS-FLKGEQIDKP 1282 Query: 259 RAERAGRALDES----IYYRAILLGITRA 185 R +++ + +LLGIT+A Sbjct: 1283 RLLEENEKMEKEDKLPARFEPVLLGITKA 1311 Score = 55.1 bits (131), Expect(2) = 2e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1313 LATESFISAASFQETTRVLTEAAVTGKCDELRGLKENVIVG 1353
>RPOC_RHIME (Q92QH6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 65.9 bits (159), Expect(2) = 2e-20 Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 45/210 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL-------- 521 G+ + +GD L E +++ DIT GLP+V ++FEAR I + + Sbjct: 1105 GQKVSQGDVLARSPLESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTIRFGRDYKN 1164 Query: 520 ERRI-----EDWNERIPRIL----------------------GVPWGFLIGAELTIAQSR 422 +RR+ ED E + ++ G P I A + Sbjct: 1165 KRRVMIEPAEDGVEPVEYLIPKGKPFHLQDGDYIEKGDYILDGNPAPHDILAIKGVEALA 1224 Query: 421 ISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG 242 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV +++ G + ++ G+ + + E Sbjct: 1225 SYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAG-DSTYIVGDNVDRIELEDVN 1283 Query: 241 RAL----DESIYYRAILLGITRAXPEYPKF 164 +L + + +LLGIT+A + P F Sbjct: 1284 DSLLAEGKKPAFGEPVLLGITKASLQTPSF 1313 Score = 52.8 bits (125), Expect(2) = 2e-20 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SFIS ASFQET +VL +AA+ G+ D L+GLKENV+ G Sbjct: 1308 LQTPSFISAASFQETTKVLTEAAVAGKTDNLQGLKENVIVG 1348
>RPOC_PSEU2 (Q4ZMN8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 60.8 bits (146), Expect(2) = 2e-20 Identities = 60/196 (30%), Positives = 88/196 (44%), Gaps = 44/196 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 509 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAERAGRAL 233 Q VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L+ ER Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENERLSTED 1296 Query: 232 DESIYYRAILLGITRA 185 + +LLGIT+A Sbjct: 1297 KFVSKFTRVLLGITKA 1312 Score = 57.8 bits (138), Expect(2) = 2e-20 Identities = 28/41 (68%), Positives = 35/41 (85%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1314 LSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1354
>RPOC_PSE14 (Q48D30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 60.8 bits (146), Expect(2) = 2e-20 Identities = 60/196 (30%), Positives = 88/196 (44%), Gaps = 44/196 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 509 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAERAGRAL 233 Q VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L+ ER Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENERLSTED 1296 Query: 232 DESIYYRAILLGITRA 185 + +LLGIT+A Sbjct: 1297 KFVSKFTRVLLGITKA 1312 Score = 57.8 bits (138), Expect(2) = 2e-20 Identities = 28/41 (68%), Positives = 35/41 (85%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1314 LSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1354
>RPOC_STRA5 (Q8E238) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 64.3 bits (155), Expect(2) = 2e-20 Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 470 ++DITQGLP++++IFEAR+ I + + ED + R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGEVVAIEEDSSTRTKKVFVKGQTGEGEYVV 1007 Query: 469 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 362 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVARGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 194 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1127 TKASLETNSF 1136 Score = 54.3 bits (129), Expect(2) = 2e-20 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1131 LETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171
>RPOC_STRA3 (Q8E7J7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 64.3 bits (155), Expect(2) = 2e-20 Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 470 ++DITQGLP++++IFEAR+ I + + ED + R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGEVVAIEEDSSTRTKKVFVKGQTGEGEYVV 1007 Query: 469 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 362 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVARGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 194 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1127 TKASLETNSF 1136 Score = 54.3 bits (129), Expect(2) = 2e-20 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1131 LETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171
>RPOC_STRA1 (Q3K3L1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 64.3 bits (155), Expect(2) = 2e-20 Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 470 ++DITQGLP++++IFEAR+ I + + ED + R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGEVVAIEEDSSTRTKKVFVKGQTGEGEYVV 1007 Query: 469 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 362 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVARGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 194 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1127 TKASLETNSF 1136 Score = 54.3 bits (129), Expect(2) = 2e-20 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1131 LETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171
>RPOC_STAS1 (Q49V53) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 65.5 bits (158), Expect(2) = 2e-20 Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 45/190 (23%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARS-------------IDSLSPNLERR----IEDWNE-------- 494 SDITQGLP++++IFEAR+ +D + +R+ I+ NE Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIVIKGANETKSYLASG 1010 Query: 493 --RIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 362 R+ +G P +L + L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRLKVEVGQSVERGEVLTEGSIEPKNYLSVSGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGI 194 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R + +LLGI Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANREAFKERKRPATAKPVLLGI 1127 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1128 TKASLETESF 1137 Score = 53.1 bits (126), Expect(2) = 2e-20 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1132 LETESFLSAASFQETTRVLTDAAIKGKRDNLLGLKENVIIG 1172
>RPOC_VIBVY (Q7MGS0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 63.9 bits (154), Expect(2) = 4e-20 Identities = 64/208 (30%), Positives = 91/208 (43%), Gaps = 43/208 (20%) Frame = -2 Query: 679 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------S 545 A VN G + GD L + + DIT GLP+V +FEAR S Sbjct: 1105 AIVNIEDGAEVGIGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEYSGTVS 1164 Query: 544 IDSLSPNLERRI------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------- 416 + R I E + E IP R L V G + IA + Sbjct: 1165 FGKETKGKRRLIITREGGETYEEMIPKHRQLNVFEGERVERGDVIADGPEAPHDILRLRG 1224 Query: 415 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 257 + N++Q+VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + Sbjct: 1225 IHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGETVEYSQ 1283 Query: 256 AERAGRALD----ESIYYRAILLGITRA 185 + A R L+ E + LLGIT+A Sbjct: 1284 VKIANRNLEAEGKEPARFERELLGITKA 1311 Score = 53.9 bits (128), Expect(2) = 4e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1313 LATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVG 1353
>RPOC_VIBVU (Q8DD19) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 63.9 bits (154), Expect(2) = 4e-20 Identities = 64/208 (30%), Positives = 91/208 (43%), Gaps = 43/208 (20%) Frame = -2 Query: 679 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------S 545 A VN G + GD L + + DIT GLP+V +FEAR S Sbjct: 1105 AIVNIEDGAEVGIGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEYSGTVS 1164 Query: 544 IDSLSPNLERRI------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------- 416 + R I E + E IP R L V G + IA + Sbjct: 1165 FGKETKGKRRLIITREGGETYEEMIPKHRQLNVFEGERVERGDVIADGPEAPHDILRLRG 1224 Query: 415 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 257 + N++Q+VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + Sbjct: 1225 IHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGETVEYSQ 1283 Query: 256 AERAGRALD----ESIYYRAILLGITRA 185 + A R L+ E + LLGIT+A Sbjct: 1284 VKIANRNLEAEGKEPARFERELLGITKA 1311 Score = 53.9 bits (128), Expect(2) = 4e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1313 LATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVG 1353
>RPOC_VIBPA (Q87KQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 63.9 bits (154), Expect(2) = 4e-20 Identities = 65/208 (31%), Positives = 92/208 (44%), Gaps = 43/208 (20%) Frame = -2 Query: 679 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------ 518 A VN G + GD L + + DIT GLP+V +FEAR + E Sbjct: 1105 AIVNIEDGAEVGVGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEHTGTVS 1164 Query: 517 --------RRI-------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------- 416 RR+ E + E IP R L V G + IA S Sbjct: 1165 FGKETKGKRRLVITRDSGEVYEEMIPKHRQLNVFEGERVERGDVIADGPESPHDILRLRG 1224 Query: 415 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 257 + N++Q+VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + Sbjct: 1225 VHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGEQVEYSQ 1283 Query: 256 AERAGRALD----ESIYYRAILLGITRA 185 + A R L+ E + LLGIT+A Sbjct: 1284 VKIANRNLEAEGKEPARFERELLGITKA 1311 Score = 53.9 bits (128), Expect(2) = 4e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1313 LATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVG 1353
>RPOC_RALEJ (Q46WD5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 62.0 bits (149), Expect(2) = 5e-20 Identities = 62/215 (28%), Positives = 96/215 (44%), Gaps = 49/215 (22%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 518 GA + G+ ++ G+ L E ++ DIT GLP+V ++FEARS + E Sbjct: 1111 GALITVKDGQQVHVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAAVLAEVTGTT 1170 Query: 517 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 404 + +R I + G FLI E + +VNK Sbjct: 1171 SFGKDTKGKQRLVITDLDGNAHEFLIAKEKQVLVHDGQVVNKGEMIVEGPADPHDILRLK 1230 Query: 403 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 260 +Q VYR QGV+I+++HIE+I+RQ+ +V+V++ G F+PGE Sbjct: 1231 GIEELAHYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQVADVG-DTKFIPGE----- 1284 Query: 259 RAERAGRALDES----------IYYRAILLGITRA 185 + ER+ LDE+ Y +LLGIT+A Sbjct: 1285 QVERS-ELLDENDRVIAEGKRPATYENLLLGITKA 1318 Score = 55.5 bits (132), Expect(2) = 5e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1320 LSTDSFISAASFQETTRVLTEAAIMGKTDDLRGLKENVIVG 1360
>RPOC_BUCAP (P41185) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1413 Score = 64.3 bits (155), Expect(2) = 5e-20 Identities = 63/196 (32%), Positives = 89/196 (45%), Gaps = 44/196 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 509 GD L E + DIT GLP+V +FEAR L+ E RR+ Sbjct: 1118 GDTLARVPQESGGTKDITGGLPRVADLFEARRPKELAILAEISGIISFGKETKGKRRLII 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 + + E IP R L V G + I+ S +VN++ Sbjct: 1178 TPVDGSDAYEEMIPKWRQLNVFEGERVERGDVISDGPESPHDILRLRGVQAVTKYIVNEV 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESI 221 Q+VYR QGV+I+++HIE+IIRQ+ K V + G S FL GE + R + + R L++ Sbjct: 1238 QEVYRLQGVKINDKHIEVIIRQMLRKATVIKSGNSE-FLDGEQVEFSRIKISNRILNKQS 1296 Query: 220 YYRAI----LLGITRA 185 A LLGIT+A Sbjct: 1297 KIPATFSRDLLGITKA 1312 Score = 53.1 bits (126), Expect(2) = 5e-20 Identities = 26/41 (63%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL ++A+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTESAVAGKKDELRGLKENVIVG 1354
>RPOC_RALSO (Q8XUZ9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 60.5 bits (145), Expect(2) = 5e-20 Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 49/215 (22%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 518 GA + G+ ++ G+ L E ++ DIT GLP+V ++FEARS + E Sbjct: 1111 GALITVKDGQQVHVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAAVLAEVTGTT 1170 Query: 517 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 404 + +R I + G FLI E + +VNK Sbjct: 1171 SFGKDTKGKQRLVITDLDGNAHEFLIAKEKQVLVHDGQVVNKGEMIVEGPADPHDILRLK 1230 Query: 403 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 260 +Q VYR QGV+I+++HIE+I+RQ+ +V++ + G F+PGE Sbjct: 1231 GVEELATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDVG-DTKFIPGE----- 1284 Query: 259 RAERAGRALDES----------IYYRAILLGITRA 185 + ER+ LDE+ Y +LLGIT+A Sbjct: 1285 QVERS-ELLDENDKVIAEGKRPATYENLLLGITKA 1318 Score = 57.0 bits (136), Expect(2) = 5e-20 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G++D L+GLKENV+ G Sbjct: 1320 LSTDSFISAASFQETTRVLTEAAIMGKVDDLRGLKENVIVG 1360
>RPOC_SHISS (Q3YUZ6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 63.2 bits (152), Expect(2) = 5e-20 Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 518 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 416 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 238 ALDES----IYYRAILLGITRA 185 L+ + Y LLGIT+A Sbjct: 1291 ELEANGKVGATYSRDLLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 5e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_SHIFL (P0A8T9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 63.2 bits (152), Expect(2) = 5e-20 Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 518 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 416 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 238 ALDES----IYYRAILLGITRA 185 L+ + Y LLGIT+A Sbjct: 1291 ELEANGKVGATYSRDLLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 5e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_SHIDS (Q32AG0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 63.2 bits (152), Expect(2) = 5e-20 Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 518 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 416 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 238 ALDES----IYYRAILLGITRA 185 L+ + Y LLGIT+A Sbjct: 1291 ELEANGKVGATYSRDLLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 5e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_SHIBS (Q31U09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 63.2 bits (152), Expect(2) = 5e-20 Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 518 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 416 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 238 ALDES----IYYRAILLGITRA 185 L+ + Y LLGIT+A Sbjct: 1291 ELEANGKVGATYSRDLLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 5e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_ECOLI (P0A8T7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 63.2 bits (152), Expect(2) = 5e-20 Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 518 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 416 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 238 ALDES----IYYRAILLGITRA 185 L+ + Y LLGIT+A Sbjct: 1291 ELEANGKVGATYSRDLLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 5e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_ECOL6 (Q8FB83) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 63.2 bits (152), Expect(2) = 5e-20 Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 518 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 416 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 238 ALDES----IYYRAILLGITRA 185 L+ + Y LLGIT+A Sbjct: 1291 ELEANGKVGATYSRDLLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 5e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_ECO57 (P0A8T8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 63.2 bits (152), Expect(2) = 5e-20 Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 518 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 416 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 238 ALDES----IYYRAILLGITRA 185 L+ + Y LLGIT+A Sbjct: 1291 ELEANGKVGATYSRDLLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 5e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_RHOPA (Q6N4S0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 62.4 bits (150), Expect(2) = 5e-20 Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 45/204 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------------------SI 542 GD L E +++ DIT GLP+V ++FEAR SI Sbjct: 1113 GDILARISTESAKTRDITGGLPRVAELFEARRPKDAAIIAEIAGTIRFGRDYKNKRRLSI 1172 Query: 541 DSLSPNLERR-----------IEDWN--ERIPRIL-GVPWGFLIGAELTIAQSRISLVNK 404 + L N E R ++D + E+ I+ G P I A I + LVN+ Sbjct: 1173 EPLDKNEEAREYLIPKGKHIHLQDGDVVEKGDFIVEGNPAPHDILAIKGIEELAAYLVNE 1232 Query: 403 IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA-GRALDE 227 IQ+VYR QGV I+++HIE+I+RQ+ K+ +++ G +++ + GE + + +A++E Sbjct: 1233 IQEVYRLQGVLINDKHIEVIVRQMLQKIEITDQGDTDM-ISGEQVDKIEFNALNAKAVEE 1291 Query: 226 S---IYYRAILLGITRAXPEYPKF 164 +LLGIT+A + F Sbjct: 1292 GKKPATGNPVLLGITKASLQTRSF 1315 Score = 55.1 bits (131), Expect(2) = 5e-20 Identities = 26/41 (63%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SF S ASFQET RVL +AA+ G++D L+GLKENV+ G Sbjct: 1310 LQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENVIVG 1350
>RPOC_PARUW (Q6MDM0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1388 Score = 64.3 bits (155), Expect(2) = 5e-20 Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 44/210 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL 521 GA ++ GE G L ++ DIT GLP+V ++FEAR I + + Sbjct: 1105 GAIISVEEGEFATAGKMLARLPRSAIKTKDITGGLPRVAELFEARKPKDSAEIAKIDGVV 1164 Query: 520 ERRIEDWNERI----PRILGVPWGFLI----------------GAELT------------ 437 + R N+RI + G+ LI G +LT Sbjct: 1165 DFRGVQKNKRIVVVRDEMTGMEEEHLISHTKHLIIQRGDHVVKGQQLTDGLVIPHEILDI 1224 Query: 436 --IAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL 263 + + + LVN++Q+VYR QGV I+++HIEII+RQ+ KVRV + G +++ L GE + Sbjct: 1225 CGVRELQKYLVNQVQEVYRLQGVDINDKHIEIIVRQMLKKVRVIDPGDTSL-LYGEEVDK 1283 Query: 262 LRAERAGRALDE----SIYYRAILLGITRA 185 E + + + + +LLGIT+A Sbjct: 1284 KEFEVENQKVSQEGGKAAQATPVLLGITKA 1313 Score = 53.1 bits (126), Expect(2) = 5e-20 Identities = 25/41 (60%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SFIS ASFQ+T RVL +AA G+ D+L G KENV+ G Sbjct: 1315 LSTESFISAASFQDTTRVLTEAACAGKTDYLVGFKENVIMG 1355
>RPOC_BIFLO (Q8G515) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1345 Score = 65.5 bits (158), Expect(2) = 5e-20 Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 52/191 (27%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARSIDSLSPNLE-------------RRI------------EDW- 500 +SDITQGLP+V ++FEAR+ +P E R+I ED Sbjct: 1029 ASDITQGLPRVTELFEARTPKGEAPITEFAGSIKIVENDRGRQIILTPDADSGAPKEDGV 1088 Query: 499 --------NERIPRILGVPWGFLIGAEL-----------TIAQSR---ISLVNKIQKVYR 386 ++R+P + +G +L TI R +++V ++ VYR Sbjct: 1089 IKPITYQVSKRVPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIVEEVHTVYR 1148 Query: 385 SQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IY 218 SQGV IH++HIE+I+ Q+T +V + + G +++ LPGEL+ R R + ++ Sbjct: 1149 SQGVDIHDKHIEVIVHQMTRRVTIIDSGDTDL-LPGELVDNARFREINRNIVKNGGRPAV 1207 Query: 217 YRAILLGITRA 185 R L+GIT+A Sbjct: 1208 GRPALMGITKA 1218 Score = 52.0 bits (123), Expect(2) = 5e-20 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T S++S ASFQET RVL +AAL ++D LKGLKENV+ G Sbjct: 1220 LATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIG 1260
>RPOC_LEIXX (Q6ACX6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 67.0 bits (162), Expect(2) = 5e-20 Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 43/182 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARSIDSLSPNLE---RRIEDWNERIPRILGVPWG---------- 461 + DITQGLP+V+++FEAR+ SP E R + + ++ +++ P Sbjct: 1006 ADDITQGLPRVQELFEARTPKGASPIAEAAGRIVIEETDKSRKVILTPDNGDEPHVYPVL 1065 Query: 460 ------------FLIGAELTIA--------------QSRISLVNKIQKVYRSQGVQIHNR 359 +G +L + + + LV +Q VYRSQGV IH++ Sbjct: 1066 KRSTLLVEDRQQVELGQQLIVGTVDPKEVLRVKGVREVQKHLVGGVQGVYRSQGVPIHDK 1125 Query: 358 HIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR-ALDE---SIYYRAILLGIT 191 HIE+I+RQ+ KV V + G +++ LPGEL+ R R AL E + R ++GIT Sbjct: 1126 HIEVIVRQMLRKVTVVDHGDTDL-LPGELVDRSRYNEINRGALQEGKKTASARQEVMGIT 1184 Query: 190 RA 185 +A Sbjct: 1185 KA 1186 Score = 50.4 bits (119), Expect(2) = 5e-20 Identities = 25/41 (60%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+S++S ASFQET RVL +AA+ G+ D L GLKENV+ G Sbjct: 1188 LATESWLSAASFQETTRVLTQAAMEGKSDPLIGLKENVIIG 1228
>RPOC_STRR6 (Q8DNF1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1225 Score = 61.6 bits (148), Expect(3) = 6e-20 Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 470 ++DITQGLP+V++IFEAR+ I + + ED + R ++ V Sbjct: 947 NTDITQGLPRVQEIFEARNPKGEAVITEVKGQVTAIEEDASTRTKKVFVKGETGEGEYVV 1006 Query: 469 PWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHN 362 P+ + GA LT + L+ ++QKVYRSQGV+I + Sbjct: 1007 PFTARMRVEVGGQVARGAALTEGSIQPKRLLAVRDVLSVETYLLGEVQKVYRSQGVEIGD 1066 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR----ALDESIYYRAILLGI 194 +HIE+++RQ+ KVRV + G +++ L G L+ + A + A R +L+GI Sbjct: 1067 KHIEVMVRQMIRKVRVMDPGDTDL-LMGTLMDINDFTDANKDVLIAGGVPATGRPVLMGI 1125 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1126 TKASLETNSF 1135 Score = 54.3 bits (129), Expect(3) = 6e-20 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1130 LETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1170 Score = 21.2 bits (43), Expect(3) = 6e-20 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -1 Query: 77 KKT*XLGGIIPVGTGXPKICASFPH 3 K+ +G IIP GTG + PH Sbjct: 1164 KENVIIGKIIPAGTGMARYRNLEPH 1188
>RPOC_STRPN (Q97NQ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1225 Score = 61.6 bits (148), Expect(3) = 6e-20 Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 470 ++DITQGLP+V++IFEAR+ I + + ED + R ++ V Sbjct: 947 NTDITQGLPRVQEIFEARNPKGEAVITEVKGQVTAIEEDASTRTKKVFVKGETGEGEYVV 1006 Query: 469 PWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHN 362 P+ + GA LT + L+ ++QKVYRSQGV+I + Sbjct: 1007 PFTARMRVEVGGQVARGAALTEGSIQPKRLLAVRDVLSVETYLLGEVQKVYRSQGVEIGD 1066 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR----ALDESIYYRAILLGI 194 +HIE+++RQ+ KVRV + G +++ L G L+ + A + A R +L+GI Sbjct: 1067 KHIEVMVRQMIRKVRVMDPGDTDL-LMGTLMDINDFTDANKDVLIAGGVPATGRPVLMGI 1125 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1126 TKASLETNSF 1135 Score = 54.3 bits (129), Expect(3) = 6e-20 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1130 LETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1170 Score = 21.2 bits (43), Expect(3) = 6e-20 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -1 Query: 77 KKT*XLGGIIPVGTGXPKICASFPH 3 K+ +G IIP GTG + PH Sbjct: 1164 KENVIIGKIIPAGTGMARYRNLEPH 1188
>RPOC_LACPL (Q88XZ2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 62.0 bits (149), Expect(3) = 6e-20 Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 44/188 (23%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI--------------- 479 DITQGLP+V++I E+R+ I ++ +E E+ ER + Sbjct: 948 DITQGLPRVQEIVESRNPKGRAEISEVTGTVELIEENPAERTKEVTVKGETDTRTYTLPL 1007 Query: 478 ---LGVPWGFLI--GAELTIAQ--------------SRISLVNKIQKVYRSQGVQIHNRH 356 + V G I GA L I + L+ ++QKVYR QGV+I ++H Sbjct: 1008 TARMAVSEGDFIHRGAALNIGSIDPKQLIQVRDVLSTENYLLREVQKVYRMQGVEIGDKH 1067 Query: 355 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGL--LRAERAGRALDESI--YYRAILLGITR 188 +EI+IRQ+ KVRV + G ++V LPG L+ + + E + I R ++LGIT+ Sbjct: 1068 VEIMIRQMLRKVRVMDPGDTDV-LPGTLMDIADFKDENYKTLIAGGIPATSRPVILGITK 1126 Query: 187 AXPEYPKF 164 A E F Sbjct: 1127 AALETNSF 1134 Score = 53.1 bits (126), Expect(3) = 6e-20 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1129 LETNSFLSAASFQETTRVLTDAAIRGKNDPLIGLKENVIIG 1169 Score = 21.9 bits (45), Expect(3) = 6e-20 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -1 Query: 77 KKT*XLGGIIPVGTGXP 27 K+ +G IIP GTG P Sbjct: 1163 KENVIIGKIIPAGTGMP 1179
>RPOC_PHOPR (Q6LLW3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 63.2 bits (152), Expect(2) = 7e-20 Identities = 62/195 (31%), Positives = 86/195 (44%), Gaps = 43/195 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPNLERRIE 506 GD L E + DIT GLP+V +FEAR S + R I Sbjct: 1119 GDILSRIPQESGGTRDITGGLPRVADLFEARKPKEPAILAEITGAVSFGKETKGKRRLII 1178 Query: 505 DWNERIP--------RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQ 398 +E P R L V G + IA + +VN++Q Sbjct: 1179 TPSEGQPYEEMIHKWRQLNVFEGEKVECGDVIADGPEAPHDILRLRGVHAVAEYIVNEVQ 1238 Query: 397 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD---- 230 +VYR QGV+I+++HIE IIRQ+ KV + + G S FLPGE + R A R L+ Sbjct: 1239 EVYRLQGVKINDKHIETIIRQMLRKVTIVKAGDSE-FLPGEQVEFSRVNIANRKLEADGK 1297 Query: 229 ESIYYRAILLGITRA 185 + + + LLGIT+A Sbjct: 1298 DIVTFSRDLLGITKA 1312 Score = 53.9 bits (128), Expect(2) = 7e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVSGKRDPLRGLKENVIVG 1354
>RPOC_ENTFA (Q82Z41) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1217 Score = 63.5 bits (153), Expect(2) = 7e-20 Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 46/190 (24%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS----------------IDSLSPNLERRIEDWNERIPRILGVPW 464 DITQGLP++++IFEAR+ I ++ + + R VP+ Sbjct: 948 DITQGLPRIQEIFEARNPKGQAVITEVTGEVIDISEDPATRQKEVTIKGKTDTRTYTVPY 1007 Query: 463 --------GFLI--GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRH 356 G +I GA LT + L+ ++Q+VYR QGV+I ++H Sbjct: 1008 TARMKVAEGDIIHRGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYRMQGVEIGDKH 1067 Query: 355 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESI------YYRAILLGI 194 IE+++RQ+ K+RV + G + + LPG L+ + AE R D + R +LLGI Sbjct: 1068 IEVMVRQMLRKIRVMDPGDTEI-LPGTLMDI--AEFKDRNYDTLVAGGVPATSRPVLLGI 1124 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1125 TKASLETNSF 1134 Score = 53.5 bits (127), Expect(2) = 7e-20 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1129 LETNSFLSAASFQETTRVLTDAAIRGKKDPLLGLKENVIIG 1169
>RPOC_STRT2 (Q5M2F6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 63.2 bits (152), Expect(2) = 7e-20 Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 470 ++DITQGLP++++IFEAR+ I + + ED R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGTVIEIEEDAATRTKKVFVQGKTGMGEYVV 1007 Query: 469 PWGFLIGAEL-------------TIAQSRIS-----------LVNKIQKVYRSQGVQIHN 362 P+ + E+ +I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVHRGEALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 194 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +LLGI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGVPATSRPVLLGI 1126 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1127 TKASLETNSF 1136 Score = 53.9 bits (128), Expect(2) = 7e-20 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1131 LETNSFLSAASFQETTRVLTDAAIRGKKDHLIGLKENVIIG 1171
>RPOC_STRT1 (Q5LXV4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 63.2 bits (152), Expect(2) = 7e-20 Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 470 ++DITQGLP++++IFEAR+ I + + ED R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGTVIEIEEDAATRTKKVFVQGKTGMGEYVV 1007 Query: 469 PWGFLIGAEL-------------TIAQSRIS-----------LVNKIQKVYRSQGVQIHN 362 P+ + E+ +I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVHRGEALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 194 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +LLGI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGVPATSRPVLLGI 1126 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1127 TKASLETNSF 1136 Score = 53.9 bits (128), Expect(2) = 7e-20 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1131 LETNSFLSAASFQETTRVLTDAAIRGKKDHLIGLKENVIIG 1171
>RPOC_BACSU (P37871) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 64.3 bits (155), Expect(2) = 7e-20 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 45/189 (23%) Frame = -2 Query: 595 DITQGLPKVEQIFEARSIDSLSPNLE--------RRIED-------------------WN 497 DITQGLP+++++FEAR+ + E + D +N Sbjct: 948 DITQGLPRIQELFEARNPKGQATITEIDGTVVEINEVRDKQQEIVVQGAVETRSYTAPYN 1007 Query: 496 ERIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNR 359 R+ G P L +LT Q L++++QKVYR QGV+I ++ Sbjct: 1008 SRLKVAEGDKITRGQVLTGGSIDPKELLKVTDLTTVQEY--LLHEVQKVYRMQGVEIGDK 1065 Query: 358 HIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGIT 191 H+E+++RQ+ KVRV + G ++V LPG L+ + + A + + + R +LLGIT Sbjct: 1066 HVEVMVRQMLRKVRVIDAGDTDV-LPGTLLDIHQFTEANKKVLLEGNRPATGRPVLLGIT 1124 Query: 190 RAXPEYPKF 164 +A E F Sbjct: 1125 KASLETDSF 1133 Score = 52.8 bits (125), Expect(2) = 7e-20 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1128 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1168
>RPOC_HAEDU (Q7VKL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 62.4 bits (150), Expect(2) = 9e-20 Identities = 61/195 (31%), Positives = 90/195 (46%), Gaps = 43/195 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 509 G+ L E + DIT GLP+V +FEAR + E RR+ Sbjct: 1119 GEALARIPQESVGTKDITGGLPRVADLFEARKPKEAAILAEISGIVSFGKETKGKRRLVI 1178 Query: 508 -----EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS--------LVNKIQ 398 E + E IP R L V G ++ GAE R+ +VN++Q Sbjct: 1179 TPAEGEAFEEMIPKWRQLNVFEGEMVQRGDIISDGAETPHDILRLRGVHAVTDYIVNEVQ 1238 Query: 397 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES-- 224 +VYR QGV+I+++HIE+I+RQ+ K V + + FL GE + + R + A R E Sbjct: 1239 EVYRLQGVKINDKHIEVIVRQMLRKA-VITNAYDSEFLEGEQVEVARVKIANRKRAEEGK 1297 Query: 223 --IYYRAILLGITRA 185 + + LLGIT+A Sbjct: 1298 PLVEFERELLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 9e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_SALTY (P0A2R4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 62.4 bits (150), Expect(2) = 9e-20 Identities = 63/202 (31%), Positives = 91/202 (45%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 518 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 416 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 238 ALDES----IYYRAILLGITRA 185 L+ + + LLGIT+A Sbjct: 1291 ELEANGKVGATFSRDLLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 9e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_SALTI (P0A2R5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 62.4 bits (150), Expect(2) = 9e-20 Identities = 63/202 (31%), Positives = 91/202 (45%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 518 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 416 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 238 ALDES----IYYRAILLGITRA 185 L+ + + LLGIT+A Sbjct: 1291 ELEANGKVGATFSRDLLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 9e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_SALPA (Q5PK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 62.4 bits (150), Expect(2) = 9e-20 Identities = 63/202 (31%), Positives = 91/202 (45%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 518 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 416 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 238 ALDES----IYYRAILLGITRA 185 L+ + + LLGIT+A Sbjct: 1291 ELEANGKVGATFSRDLLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 9e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_SALCH (Q57H68) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 62.4 bits (150), Expect(2) = 9e-20 Identities = 63/202 (31%), Positives = 91/202 (45%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 518 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 416 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 238 ALDES----IYYRAILLGITRA 185 L+ + + LLGIT+A Sbjct: 1291 ELEANGKVGATFSRDLLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 9e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_XANCP (Q8PC55) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 61.6 bits (148), Expect(2) = 9e-20 Identities = 64/206 (31%), Positives = 91/206 (44%), Gaps = 43/206 (20%) Frame = -2 Query: 673 VNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR------ 512 VN G + GD + E S++ DIT GLP+V +FEAR + ER Sbjct: 1109 VNLQDGAAVGVGDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFG 1168 Query: 511 ----------IEDWN-----ERIPR------------------ILGVPWGFLIGAELTIA 431 I+D + E IP+ + G P I L + Sbjct: 1169 KDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVE 1228 Query: 430 QSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA- 254 LV +IQ VYR QGV+I+++HIE+I RQ+ KV +++ G S FL GE + R Sbjct: 1229 PLAAYLVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEITDQGNSK-FLNGEQVERQRVI 1287 Query: 253 ERAGRALDES---IYYRAILLGITRA 185 E R + + Y +LLGIT+A Sbjct: 1288 EENARLVTRNELPAKYDPVLLGITKA 1313 Score = 55.1 bits (131), Expect(2) = 9e-20 Identities = 28/41 (68%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+RG D L+GLKENV+ G Sbjct: 1315 LATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVG 1355
>RPOC_XANC8 (Q4URD3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 61.6 bits (148), Expect(2) = 9e-20 Identities = 64/206 (31%), Positives = 91/206 (44%), Gaps = 43/206 (20%) Frame = -2 Query: 673 VNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR------ 512 VN G + GD + E S++ DIT GLP+V +FEAR + ER Sbjct: 1109 VNLQDGAAVGVGDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFG 1168 Query: 511 ----------IEDWN-----ERIPR------------------ILGVPWGFLIGAELTIA 431 I+D + E IP+ + G P I L + Sbjct: 1169 KDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVE 1228 Query: 430 QSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA- 254 LV +IQ VYR QGV+I+++HIE+I RQ+ KV +++ G S FL GE + R Sbjct: 1229 PLAAYLVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEITDQGNSK-FLNGEQVERQRVI 1287 Query: 253 ERAGRALDES---IYYRAILLGITRA 185 E R + + Y +LLGIT+A Sbjct: 1288 EENARLVTRNELPAKYDPVLLGITKA 1313 Score = 55.1 bits (131), Expect(2) = 9e-20 Identities = 28/41 (68%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+RG D L+GLKENV+ G Sbjct: 1315 LATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVG 1355
>RPOC_VIBCH (Q9KV29) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 62.8 bits (151), Expect(2) = 9e-20 Identities = 65/208 (31%), Positives = 90/208 (43%), Gaps = 43/208 (20%) Frame = -2 Query: 679 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------S 545 A VN G + GD L + + DIT GLP+V +FEAR S Sbjct: 1105 AIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEHSGTVS 1164 Query: 544 IDSLSPNLERRI------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------- 416 + R I + + E IP R L V G I IA S Sbjct: 1165 FGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEGERIERGDVIADGPESPHDILRLRG 1224 Query: 415 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 257 + N++Q+VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + Sbjct: 1225 IHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGDSE-FLPGETVEYSQ 1283 Query: 256 AERAGRAL----DESIYYRAILLGITRA 185 + A R L E + LLGIT+A Sbjct: 1284 VKIANRKLVEEGKEPARFERELLGITKA 1311 Score = 53.9 bits (128), Expect(2) = 9e-20 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1313 LATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVG 1353
>RPOC_NITWN (Q3SSX9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 61.6 bits (148), Expect(2) = 9e-20 Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 45/204 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL--------ERRIE- 506 GD L E +++ DIT GLP+V ++FEAR I ++ + +RRI Sbjct: 1111 GDILARISTESAKTRDITGGLPRVAELFEARRPKDAAIIAEIAGTIRFGRDYKNKRRISI 1170 Query: 505 ---DWNER-----IPR------------------ILGVPWGFLIGAELTIAQSRISLVNK 404 D E IP+ + G P I A I + LVN+ Sbjct: 1171 EPVDQEEETREYLIPKGKHIHLQDGDIVEKGDFIVDGNPAPHDILAIKGIEELAAYLVNE 1230 Query: 403 IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES 224 IQ+VYR QGV I+++HIE+I+RQ+ KV + + G +++ + GE I + +R E Sbjct: 1231 IQEVYRLQGVLINDKHIEVIVRQMLQKVEIIDQGETDM-ISGEQIDKIEFDRLNLKAQEE 1289 Query: 223 IYYRA----ILLGITRAXPEYPKF 164 A +LLGIT+A + F Sbjct: 1290 GKKIATGTPVLLGITKASLQTRSF 1313 Score = 55.1 bits (131), Expect(2) = 9e-20 Identities = 26/41 (63%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SF S ASFQET RVL +AA+ G++D L+GLKENV+ G Sbjct: 1308 LQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENVIVG 1348
>RPOC_BACLD (Q65PB4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 63.9 bits (154), Expect(2) = 9e-20 Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 43/187 (22%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS---------IDSL--------------------------SPNL 521 DITQGLP+++++FEAR+ ID + +P Sbjct: 948 DITQGLPRIQELFEARNPKGQATISEIDGVVAEINEVRDKQQEIVVQGEVESRSYTAPYN 1007 Query: 520 ERRIEDWNERIPRILGVPWGFLIGAELT----IAQSRISLVNKIQKVYRSQGVQIHNRHI 353 R E+I R + G + EL I + L++++QKVYR QGV+I ++H+ Sbjct: 1008 ARLKVTEGEKISRGQVLTEGSVDPKELLKVTDITTVQEYLLHEVQKVYRMQGVEIGDKHV 1067 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 E+++RQ+ KVRV + G + V LPG L+ + + A + + R +LLGIT+A Sbjct: 1068 EVMVRQMLRKVRVIDAGDTEV-LPGTLLDIHQFTEANKKVLLEGKRPATGRPVLLGITKA 1126 Query: 184 XPEYPKF 164 E F Sbjct: 1127 SLETDSF 1133 Score = 52.8 bits (125), Expect(2) = 9e-20 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1128 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1168
>RPOC_CLOTE (Q890N5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1135 Score = 74.7 bits (182), Expect(2) = 9e-20 Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 44/182 (24%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARSIDSLSPNLE-----RRIEDWNERIPRILG--------VPWGF 458 SDITQGLP+VE++FEAR L+ E R E +R ++G +P+G Sbjct: 924 SDITQGLPRVEELFEARKPKGLAIVSEINGTIRIDETKKKRTVVVIGETEEISYDIPFGS 983 Query: 457 --------LIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHIE 350 +I A I + ++ L++++QKVYR QGV I+++H+E Sbjct: 984 RLKVSNGDVISAGDEITEGSVNPHDVLRIKGPNGVKNYLLSEVQKVYRLQGVDINDKHLE 1043 Query: 349 IIIRQVTSKVRVSEDGMSNVFLPGELIGLL-------RAERAGRALDESIYYRAILLGIT 191 +++RQ+T K+++ E G FLPG ++ + +AE G+ E+ R LLGIT Sbjct: 1044 VVVRQMTRKIKIEESG-DTEFLPGTMVDIFDFQEENAKAEEEGK---ETAKGRITLLGIT 1099 Query: 190 RA 185 +A Sbjct: 1100 KA 1101 Score = 42.0 bits (97), Expect(2) = 9e-20 Identities = 20/33 (60%), Positives = 25/33 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKG 82 L T SF+S ASFQET RVL AA++G++D L G Sbjct: 1103 LATDSFLSSASFQETTRVLTDAAIKGKVDPLLG 1135
>RPOC_BURS3 (Q39KH4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 61.6 bits (148), Expect(2) = 1e-19 Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 49/215 (22%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 518 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS E Sbjct: 1111 GALITVKDGQQVQVGEVLARIPTEAQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTT 1170 Query: 517 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 404 + +R I + G FLI E + +VNK Sbjct: 1171 SFGKDTKGKQRLVITDLEGNQHEFLIAKEKQVLVHDAQVVNKGEMIVDGPADPHDILRLQ 1230 Query: 403 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 260 +Q VYR QGV+I+++HIE+I+RQ+ +V+++++G + F+PGE Sbjct: 1231 GIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQITDNGDTR-FIPGE----- 1284 Query: 259 RAERAGRALDES----------IYYRAILLGITRA 185 + ER+ LDE+ Y +LLGIT+A Sbjct: 1285 QVERSD-MLDENDRMIAEDKRPASYDNVLLGITKA 1318 Score = 54.7 bits (130), Expect(2) = 1e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1320 LSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVG 1360
>RPOC_EHRCJ (Q3YST4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1410 Score = 65.1 bits (157), Expect(2) = 1e-19 Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 46/219 (21%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 509 GA +N G+ ++ GD + E ++ DIT GLP+V ++FEAR ++ +++ + Sbjct: 1098 GAVLNVQDGQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPKEHAIVSDIDGYV 1157 Query: 508 E---DWNERIPRILGVPW-GFLIGAELTIAQSRISLVN---------------------- 407 E D+ RI P L E + + + ++VN Sbjct: 1158 EFGKDYYRSKRRIFIKPVDDKLTPVEYLVPKGKHTIVNEGDFVHKGDLLMDGDPDPHDIL 1217 Query: 406 --------------KIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 269 +IQ+VYR QGV+I N+HIEII+RQ+ KV + E G ++L GE I Sbjct: 1218 RVLGVEALANYMISEIQQVYRLQGVRIDNKHIEIILRQMLQKVEIFEPG-DTMYLVGENI 1276 Query: 268 GLLRAERAGRAL----DESIYYRAILLGITRAXPEYPKF 164 + + ++ Y IL GITRA + F Sbjct: 1277 DMEEVIKTNNSMVKMGKSPAKYAPILQGITRASLDTNSF 1315 Score = 51.2 bits (121), Expect(2) = 1e-19 Identities = 25/41 (60%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SF+S ASFQET +VL +AA G+ D L GLKENV+ G Sbjct: 1310 LDTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLKENVIVG 1350
>RPOC_BORPE (Q7W0R8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 61.2 bits (147), Expect(2) = 1e-19 Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 43/209 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 518 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS E Sbjct: 1104 GALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTV 1163 Query: 517 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 404 + +R I + GV FLI E + +VNK Sbjct: 1164 SFGKDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQ 1223 Query: 403 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 266 +Q VYR QGV+I+++HIE+I+RQ+ +V + + G F+PGE + Sbjct: 1224 GIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPG-DTEFIPGEQVERS 1282 Query: 265 --LLRAERAGRALDESIYYRAILLGITRA 185 L +R Y +LLGIT+A Sbjct: 1283 ELLNENDRVVAEDKRPASYDNVLLGITKA 1311 Score = 54.7 bits (130), Expect(2) = 1e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1313 LSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVG 1353
>RPOC_BORPA (Q7W2G8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 61.2 bits (147), Expect(2) = 1e-19 Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 43/209 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 518 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS E Sbjct: 1104 GALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTV 1163 Query: 517 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 404 + +R I + GV FLI E + +VNK Sbjct: 1164 SFGKDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQ 1223 Query: 403 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 266 +Q VYR QGV+I+++HIE+I+RQ+ +V + + G F+PGE + Sbjct: 1224 GIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPG-DTEFIPGEQVERS 1282 Query: 265 --LLRAERAGRALDESIYYRAILLGITRA 185 L +R Y +LLGIT+A Sbjct: 1283 ELLNENDRVVAEDKRPASYDNVLLGITKA 1311 Score = 54.7 bits (130), Expect(2) = 1e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1313 LSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVG 1353
>RPOC_BORBR (Q7WRD8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 61.2 bits (147), Expect(2) = 1e-19 Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 43/209 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 518 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS E Sbjct: 1104 GALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTV 1163 Query: 517 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 404 + +R I + GV FLI E + +VNK Sbjct: 1164 SFGKDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQ 1223 Query: 403 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 266 +Q VYR QGV+I+++HIE+I+RQ+ +V + + G F+PGE + Sbjct: 1224 GIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPG-DTEFIPGEQVERS 1282 Query: 265 --LLRAERAGRALDESIYYRAILLGITRA 185 L +R Y +LLGIT+A Sbjct: 1283 ELLNENDRVVAEDKRPASYDNVLLGITKA 1311 Score = 54.7 bits (130), Expect(2) = 1e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1313 LSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVG 1353
>RPOC_STRMU (Q8DS47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1209 Score = 61.6 bits (148), Expect(2) = 1e-19 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRIL------------ 476 ++DITQGLP++++IFEAR+ I + + ED R ++ Sbjct: 948 NADITQGLPRIQEIFEARNPKGEAVITEVKGQVTDIEEDAATRTKKVYVKGATGEGEYTV 1007 Query: 475 ----------------GVPW--GFLIGAELTIAQSRIS----LVNKIQKVYRSQGVQIHN 362 G P G + L + +S L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVQVGDEVHRGAPLTEGSIQPKHLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR----ALDESIYYRAILLGI 194 +H+E+++RQ+ KVRV + G + + LPG L+ + A R A R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTGL-LPGILMDIADFTDANRDIVIAGGIPATSRPVLMGI 1126 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1127 TKASLETNSF 1136 Score = 54.3 bits (129), Expect(2) = 1e-19 Identities = 27/41 (65%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1131 LETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171
>RPOC_BUCAI (P57145) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 62.4 bits (150), Expect(2) = 2e-19 Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 44/202 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------------- 518 G + GD L E + DIT GLP+V +FEAR L+ E Sbjct: 1112 GVQISSGDTLARVPQESGGTKDITGGLPRVADLFEARRPKELAILAEISGIISFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 416 RR+ + + E IP R L V G + I+ S Sbjct: 1172 KRRLVITPVDGSDSYEEMIPKWRQLNVFEGERVDRGDVISDGPESPHDILRLRGVQAVTR 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q+VYR QGV+I+++HIE+IIRQ+ K V + S+ FL GE + + + R Sbjct: 1232 YIVNEVQEVYRLQGVKINDKHIEVIIRQMLRKATVVKSRDSD-FLEGEQVEFSHIKISNR 1290 Query: 238 ALDES----IYYRAILLGITRA 185 LD+ + LLGIT+A Sbjct: 1291 MLDKKKKMPATFSRDLLGITKA 1312 Score = 53.1 bits (126), Expect(2) = 2e-19 Identities = 26/41 (63%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL ++A+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTESAVAGKRDELRGLKENVIVG 1354
>RPOC_XANOR (Q8KTH8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 60.5 bits (145), Expect(2) = 2e-19 Identities = 64/206 (31%), Positives = 90/206 (43%), Gaps = 43/206 (20%) Frame = -2 Query: 673 VNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR------ 512 VN G + GD + E S++ DIT GLP+V +FEAR + ER Sbjct: 1109 VNLQDGAAVGVGDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFG 1168 Query: 511 ----------IEDWN-----ERIPR------------------ILGVPWGFLIGAELTIA 431 I+D + E IP+ + G P I L + Sbjct: 1169 KDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVE 1228 Query: 430 QSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA- 254 LV +IQ VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R Sbjct: 1229 PLAAYLVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVI 1287 Query: 253 ERAGRALDES---IYYRAILLGITRA 185 E R + + Y +LLGIT+A Sbjct: 1288 EENARLVKRNELPAKYDPVLLGITKA 1313 Score = 55.1 bits (131), Expect(2) = 2e-19 Identities = 28/41 (68%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+RG D L+GLKENV+ G Sbjct: 1315 LATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVG 1355
>RPOC_XANC5 (Q3BWZ0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 60.5 bits (145), Expect(2) = 2e-19 Identities = 64/206 (31%), Positives = 90/206 (43%), Gaps = 43/206 (20%) Frame = -2 Query: 673 VNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR------ 512 VN G + GD + E S++ DIT GLP+V +FEAR + ER Sbjct: 1108 VNLQDGAAVGVGDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFG 1167 Query: 511 ----------IEDWN-----ERIPR------------------ILGVPWGFLIGAELTIA 431 I+D + E IP+ + G P I L + Sbjct: 1168 KDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVE 1227 Query: 430 QSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA- 254 LV +IQ VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R Sbjct: 1228 PLAAYLVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVI 1286 Query: 253 ERAGRALDES---IYYRAILLGITRA 185 E R + + Y +LLGIT+A Sbjct: 1287 EENARLVKRNELPAKYDPVLLGITKA 1312 Score = 55.1 bits (131), Expect(2) = 2e-19 Identities = 28/41 (68%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+RG D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVG 1354
>RPOC_XANAC (Q8PNS9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 60.5 bits (145), Expect(2) = 2e-19 Identities = 64/206 (31%), Positives = 90/206 (43%), Gaps = 43/206 (20%) Frame = -2 Query: 673 VNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR------ 512 VN G + GD + E S++ DIT GLP+V +FEAR + ER Sbjct: 1108 VNLQDGAAVGVGDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFG 1167 Query: 511 ----------IEDWN-----ERIPR------------------ILGVPWGFLIGAELTIA 431 I+D + E IP+ + G P I L + Sbjct: 1168 KDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVE 1227 Query: 430 QSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA- 254 LV +IQ VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R Sbjct: 1228 PLAAYLVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVI 1286 Query: 253 ERAGRALDES---IYYRAILLGITRA 185 E R + + Y +LLGIT+A Sbjct: 1287 EENARLVKRNELPAKYDPVLLGITKA 1312 Score = 55.1 bits (131), Expect(2) = 2e-19 Identities = 28/41 (68%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+RG D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVG 1354
>RPOC_BRAJA (Q89J75) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 60.5 bits (145), Expect(2) = 2e-19 Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 49/208 (23%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSID------------------------SL 533 GD L E +++ DIT GLP+V ++FEAR S+ Sbjct: 1110 GDILARVSTESAKTRDITGGLPRVAELFEARRPKDAAIIAEIAGTIRFGRDYKNKRRISI 1169 Query: 532 SPNLERRIEDWNERIPR------------------ILGVPWGFLIGAELTIAQSRISLVN 407 P +++ E IP+ + G P I A I + LVN Sbjct: 1170 EP-MDKTDEPREYLIPKGKHIHLQDGDVVEKGDFIVEGNPAPHDILAVKGIEELAAYLVN 1228 Query: 406 KIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL-------RAER 248 +IQ+VYR QGV I+++HIE+I+RQ+ KV V++ G +++ + GE + + +A+ Sbjct: 1229 EIQEVYRLQGVLINDKHIEVIVRQMLQKVEVTDQGDTDM-ISGEQVDKIEFDALNEKAKE 1287 Query: 247 AGRALDESIYYRAILLGITRAXPEYPKF 164 G+ + +LLGIT+A + F Sbjct: 1288 EGKKIATG---TPVLLGITKASLQTRSF 1312 Score = 55.1 bits (131), Expect(2) = 2e-19 Identities = 26/41 (63%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SF S ASFQET RVL +AA+ G++D L+GLKENV+ G Sbjct: 1307 LQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENVIVG 1347
>RPOC_LACAC (Q5FM96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1217 Score = 60.8 bits (146), Expect(3) = 2e-19 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 44/190 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARS-------------IDSLSPNLE---RRIEDWNERIPRILGV 470 + DITQGLP+V+++FEAR+ IDS+ N R I + R V Sbjct: 950 AEDITQGLPRVQELFEARNPKGRATISEVDGVIDSIQENPAEHTREITVKGKIDTRSYSV 1009 Query: 469 PWGFLI----------GAELTIAQ--------------SRISLVNKIQKVYRSQGVQIHN 362 P+ + G +LT+ + ++ ++QK YR QGV I + Sbjct: 1010 PYTASVAVSEGDYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDIAD 1069 Query: 361 RHIEIIIRQVTSKVRVSEDGMSNVFLPGEL--IGLLRAERAGRALDESI--YYRAILLGI 194 +H+E++ RQ+ KVRV + G +++ LPGE+ IG R + I ++I+L I Sbjct: 1070 KHVEVLTRQMLQKVRVLDPGETDI-LPGEVMDIGQFRDRNKEVIISGGIPATAQSIILSI 1128 Query: 193 TRAXPEYPKF 164 T+A E F Sbjct: 1129 TKAALETNSF 1138 Score = 52.4 bits (124), Expect(3) = 2e-19 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL A++RG+ D L GLKENV+ G Sbjct: 1133 LETNSFLSAASFQETTRVLTDASIRGKNDPLLGLKENVIIG 1173 Score = 21.9 bits (45), Expect(3) = 2e-19 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -1 Query: 77 KKT*XLGGIIPVGTGXP 27 K+ +G IIP GTG P Sbjct: 1167 KENVIIGKIIPAGTGMP 1183
>RPOC_THIDA (Q3SLQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 60.1 bits (144), Expect(2) = 2e-19 Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 43/209 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 518 G+ + G+ + GD L E S++ DIT GLP+V ++FEARS E Sbjct: 1105 GSIITVKDGQDVAVGDVLARIPQETSKTRDITGGLPRVAELFEARSPKDAGVLAEVTGTV 1164 Query: 517 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 404 + +R I + GV +LI E + +V K Sbjct: 1165 SFGKDTKGKQRLVITDLDGVAHEYLITKEKHVTAHDGQIVQKGEMIVDGPVDPHDILRLQ 1224 Query: 403 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 266 +Q VYR QGV+I+++HIE+I+RQ+ +V V++ G + + +PGE + Sbjct: 1225 GVEALASYITDEVQDVYRLQGVKINDKHIEVIVRQMLRRVVVADPGDTGL-IPGEQVERS 1283 Query: 265 --LLRAERAGRALDESIYYRAILLGITRA 185 L + A E Y ILLGIT+A Sbjct: 1284 EVLQINDEMIAAGKEPAVYDPILLGITKA 1312 Score = 55.1 bits (131), Expect(2) = 2e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LSTDSFISAASFQETTRVLTEAAIMGKKDELRGLKENVIVG 1354
>RPOC_NOCFA (Q5YPE1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1317 Score = 68.2 bits (165), Expect(2) = 2e-19 Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 55/192 (28%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS-------------------------------------IDSLSP 527 DIT GLP+V+++FEAR D LS Sbjct: 1023 DITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGGEEVVYDKLSK 1082 Query: 526 NLERRIEDWNERIPRILGVPWGFLIGAELTIA--------------QSRISLVNKIQKVY 389 R+ ++ R+L +G +L Q ++ LV+++Q+VY Sbjct: 1083 RQRLRVFKHDDGTERLLSDGDHVEVGQQLLEGAADPHEVLRVMGPRQVQVHLVHEVQEVY 1142 Query: 388 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESI 221 RSQGV IH++HIE+I+RQ+ +V + + G S FLPG L E A R + E Sbjct: 1143 RSQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLTERAEFEAANRRVVAEGGEPA 1201 Query: 220 YYRAILLGITRA 185 R +L+GIT+A Sbjct: 1202 SGRPVLMGITKA 1213 Score = 47.0 bits (110), Expect(2) = 2e-19 Identities = 25/41 (60%), Positives = 29/41 (70%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T S++S ASFQET RVL AA+ R D L GLKENV+ G Sbjct: 1215 LATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIG 1255
>RPOC_BURPS (Q63Q04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 60.1 bits (144), Expect(2) = 3e-19 Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 49/215 (22%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL 521 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS + ++ + Sbjct: 1111 GALITVKDGQQVQVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTV 1170 Query: 520 ERRIEDWNER---IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 404 + ++ I + G FLI E + +VNK Sbjct: 1171 SFGKDTKGKQRLVITDLEGNQHEFLIAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQ 1230 Query: 403 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 260 +Q VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE Sbjct: 1231 GIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGE----- 1284 Query: 259 RAERAGRALDES----------IYYRAILLGITRA 185 + ER+ LDE+ Y ILLGIT+A Sbjct: 1285 QVERSD-MLDENDRMIAEDKRPATYDNILLGITKA 1318 Score = 54.7 bits (130), Expect(2) = 3e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1320 LSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVG 1360
>RPOC_BURP1 (Q3JMQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 60.1 bits (144), Expect(2) = 3e-19 Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 49/215 (22%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL 521 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS + ++ + Sbjct: 1111 GALITVKDGQQVQVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTV 1170 Query: 520 ERRIEDWNER---IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 404 + ++ I + G FLI E + +VNK Sbjct: 1171 SFGKDTKGKQRLVITDLEGNQHEFLIAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQ 1230 Query: 403 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 260 +Q VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE Sbjct: 1231 GIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGE----- 1284 Query: 259 RAERAGRALDES----------IYYRAILLGITRA 185 + ER+ LDE+ Y ILLGIT+A Sbjct: 1285 QVERSD-MLDENDRMIAEDKRPATYDNILLGITKA 1318 Score = 54.7 bits (130), Expect(2) = 3e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1320 LSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVG 1360
>RPOC_BURMA (Q62GJ7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 60.1 bits (144), Expect(2) = 3e-19 Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 49/215 (22%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL 521 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS + ++ + Sbjct: 1111 GALITVKDGQQVQVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTV 1170 Query: 520 ERRIEDWNER---IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 404 + ++ I + G FLI E + +VNK Sbjct: 1171 SFGKDTKGKQRLVITDLEGNQHEFLIAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQ 1230 Query: 403 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 260 +Q VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE Sbjct: 1231 GIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGE----- 1284 Query: 259 RAERAGRALDES----------IYYRAILLGITRA 185 + ER+ LDE+ Y ILLGIT+A Sbjct: 1285 QVERSD-MLDENDRMIAEDKRPATYDNILLGITKA 1318 Score = 54.7 bits (130), Expect(2) = 3e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1320 LSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVG 1360
>RPOC_ERWCT (Q6DAM9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 60.5 bits (145), Expect(2) = 3e-19 Identities = 60/196 (30%), Positives = 89/196 (45%), Gaps = 44/196 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE--RRI-- 509 GD L E S + DIT GLP+V +FEAR I S + RR+ Sbjct: 1118 GDTLARLPQESSGTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVI 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 + + E IP R L V G ++ ++ S + N++ Sbjct: 1178 SPLDGSDAYEEMIPKWRQLNVFEGEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEV 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDE-- 227 Q+VYR QGV+I+++HIE+I+RQ+ K + G S FL GE + R + A R L+ Sbjct: 1238 QEVYRLQGVKINDKHIEVIVRQMLRKGTIVSAG-STEFLEGEQAEMSRIKIANRKLEADG 1296 Query: 226 --SIYYRAILLGITRA 185 + + LLGIT+A Sbjct: 1297 KITATFSRDLLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 3e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_XYLFT (Q87A33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 59.7 bits (143), Expect(2) = 3e-19 Identities = 63/201 (31%), Positives = 87/201 (43%), Gaps = 49/201 (24%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPNLERRI- 509 GD + E S++ DIT GLP+V +FEAR S + +R I Sbjct: 1119 GDVVAKIPQEASKTRDITGGLPRVADLFEARRPKDPAILAERSGVISFGKDTKGKQRLII 1178 Query: 508 -----EDWNERIPR------------------ILGVPWGFLIGAELTIAQSRISLVNKIQ 398 + E IP+ + G P I L I LV +IQ Sbjct: 1179 KDADGSEHEELIPKYRQIIVFEGEHVTKGETIVDGEPSPQDILRLLGIEPLAAYLVKEIQ 1238 Query: 397 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES-- 224 VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + ER R +DE+ Sbjct: 1239 DVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGE-----QVERQ-RVIDENAK 1291 Query: 223 --------IYYRAILLGITRA 185 Y +LLGIT+A Sbjct: 1292 LIARNELPAKYNPVLLGITKA 1312 Score = 55.1 bits (131), Expect(2) = 3e-19 Identities = 28/41 (68%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+RG D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVG 1354
>RPOC_XYLFA (Q9PA87) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 59.7 bits (143), Expect(2) = 3e-19 Identities = 63/201 (31%), Positives = 87/201 (43%), Gaps = 49/201 (24%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPNLERRI- 509 GD + E S++ DIT GLP+V +FEAR S + +R I Sbjct: 1119 GDVVAKIPQEASKTRDITGGLPRVADLFEARRPKDPAILAERSGVISFGKDTKGKQRLII 1178 Query: 508 -----EDWNERIPR------------------ILGVPWGFLIGAELTIAQSRISLVNKIQ 398 + E IP+ + G P I L I LV +IQ Sbjct: 1179 KDADGSEHEELIPKYRQIIVFEGEHVTKGETIVDGEPSPQDILRLLGIEPLAAYLVKEIQ 1238 Query: 397 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES-- 224 VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + ER R +DE+ Sbjct: 1239 DVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGE-----QVERQ-RVIDENAK 1291 Query: 223 --------IYYRAILLGITRA 185 Y +LLGIT+A Sbjct: 1292 LIARNELPAKYNPVLLGITKA 1312 Score = 55.1 bits (131), Expect(2) = 3e-19 Identities = 28/41 (68%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+RG D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVG 1354
>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 66.6 bits (161), Expect(2) = 3e-19 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 56/193 (29%) Frame = -2 Query: 595 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRILGVP------------- 467 DIT GLP+V+++FEAR +P + R+ED ER +I VP Sbjct: 1023 DITGGLPRVQELFEARVPRGKAPIADVTGRVRLED-GERFYKITIVPDDGGEEVVYDKLS 1081 Query: 466 -------WGFLIGAELTIAQS----------------------------RISLVNKIQKV 392 + G+E ++ +I LV ++Q+V Sbjct: 1082 KRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQEV 1141 Query: 391 YRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DES 224 YR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E R + E Sbjct: 1142 YRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFESENRRVVAESGEP 1200 Query: 223 IYYRAILLGITRA 185 R +L+GIT+A Sbjct: 1201 AAGRPVLMGITKA 1213 Score = 48.1 bits (113), Expect(2) = 3e-19 Identities = 25/41 (60%), Positives = 29/41 (70%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T S++S ASFQET RVL AA+ R D L GLKENV+ G Sbjct: 1215 LATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIG 1255
>RPOC_YERPS (Q66FQ1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 60.1 bits (144), Expect(2) = 4e-19 Identities = 62/197 (31%), Positives = 91/197 (46%), Gaps = 45/197 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE--RRI-- 509 GD L E S + DIT GLP+V +FEAR I S + RR+ Sbjct: 1118 GDTLARIPQESSGTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVI 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 + + E IP R L V G ++ ++ S + N++ Sbjct: 1178 SPLDGSDAYEEMIPKWRQLNVFEGEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEV 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD--- 230 Q+VYR QGV+I+++HIE+I+RQ+ K + + G S FL GE + R + A R L Sbjct: 1238 QEVYRLQGVKINDKHIEVIVRQMLRKGTIVDAG-STDFLEGEQAEMSRVKIANRKLAAEG 1296 Query: 229 --ESIYYRAILLGITRA 185 E+ + R LLGIT+A Sbjct: 1297 KIEATFTRD-LLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 4e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_YERPE (Q8D1H3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 60.1 bits (144), Expect(2) = 4e-19 Identities = 62/197 (31%), Positives = 91/197 (46%), Gaps = 45/197 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE--RRI-- 509 GD L E S + DIT GLP+V +FEAR I S + RR+ Sbjct: 1118 GDTLARIPQESSGTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVI 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 + + E IP R L V G ++ ++ S + N++ Sbjct: 1178 SPLDGSDAYEEMIPKWRQLNVFEGEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEV 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD--- 230 Q+VYR QGV+I+++HIE+I+RQ+ K + + G S FL GE + R + A R L Sbjct: 1238 QEVYRLQGVKINDKHIEVIVRQMLRKGTIVDAG-STDFLEGEQAEMSRVKIANRKLAAEG 1296 Query: 229 --ESIYYRAILLGITRA 185 E+ + R LLGIT+A Sbjct: 1297 KIEATFTRD-LLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 4e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_DESVH (Q727C6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1385 Score = 58.9 bits (141), Expect(2) = 4e-19 Identities = 27/41 (65%), Positives = 35/41 (85%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SFIS ASFQET +VL +A+LRG++D+L+GLKENV+ G Sbjct: 1302 LTTSSFISAASFQETTKVLTEASLRGKMDYLRGLKENVIVG 1342 Score = 55.5 bits (132), Expect(2) = 4e-19 Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 44/210 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL 521 GA + G+ L GD + E S++ DI GLP+V ++FE R + ++ + Sbjct: 1093 GAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAVVSEIAGIV 1152 Query: 520 ERRIEDWNER---IPRILGVPWGFLI--GAELTIAQSRIS-------------------- 416 E +R + +G +L+ G +T+ Sbjct: 1153 TYAGETKGKRKLVVTPEIGEAKEYLVPKGKHITVTDGDFVEAGDLLTEGHPELHDILRTR 1212 Query: 415 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI--G 266 L ++IQ+VYR QGV I ++HIE+I+RQ+ KV V + G FL GE + G Sbjct: 1213 GEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPG-GTTFLVGEQVDKG 1271 Query: 265 LLRAERAGRALDES---IYYRAILLGITRA 185 R E RA+ E ++LGIT+A Sbjct: 1272 EFRVENT-RAMGEGRTPATAEPLVLGITQA 1300
>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 66.2 bits (160), Expect(2) = 4e-19 Identities = 55/192 (28%), Positives = 82/192 (42%), Gaps = 55/192 (28%) Frame = -2 Query: 595 DITQGLPKVEQIFEARS-------------------------------------IDSLSP 527 DIT GLP+V+++FEAR D LS Sbjct: 1023 DITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKLSK 1082 Query: 526 NLERRIEDWNERIPRILGVPWGFLIGAELTIAQS--------------RISLVNKIQKVY 389 R+ + R+L +G +L + +I LV ++Q+VY Sbjct: 1083 RQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQEVY 1142 Query: 388 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESI 221 R+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E R + E Sbjct: 1143 RAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAENRRVVAEGGEPA 1201 Query: 220 YYRAILLGITRA 185 R +L+GIT+A Sbjct: 1202 AGRPVLMGITKA 1213 Score = 48.1 bits (113), Expect(2) = 4e-19 Identities = 25/41 (60%), Positives = 29/41 (70%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T S++S ASFQET RVL AA+ R D L GLKENV+ G Sbjct: 1215 LATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIG 1255
>RPOC_HAEI8 (Q4QN34) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 59.7 bits (143), Expect(2) = 5e-19 Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 43/201 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------------IDSLSPNLE- 518 G + G+ L E + DIT GLP+V +FEAR I S + Sbjct: 1113 GAAVKVGEPLARIPQESVGTKDITGGLPRVADLFEARKPKEPAILAEISGIVSFGKETKG 1172 Query: 517 -RRI-------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS-------- 416 RR+ E + E IP R L V G ++ GAE R+ Sbjct: 1173 KRRLLITPAEGETYEEMIPKWRQLNVFEGEMVQRGDVISDGAETPHDILRLRGVRAVTEY 1232 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 236 +VN++Q VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAVITK-AYDSEFLEGEQVEVARVKIVNRQ 1291 Query: 235 LDES----IYYRAILLGITRA 185 + + + LLGIT+A Sbjct: 1292 REAEGKPPVEFERELLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 5e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_HAEIN (P43739) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 59.7 bits (143), Expect(2) = 5e-19 Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 43/201 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------------IDSLSPNLE- 518 G + G+ L E + DIT GLP+V +FEAR I S + Sbjct: 1113 GTAVKVGEPLARIPQESVGTKDITGGLPRVADLFEARKPKEPAILAEISGIVSFGKETKG 1172 Query: 517 -RRI-------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS-------- 416 RR+ E + E IP R L V G ++ GAE R+ Sbjct: 1173 KRRLLITPAEGETYEEMIPKWRQLNVFEGEMVQRGDVISDGAETPHDILRLRGVRAVTEY 1232 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 236 +VN++Q VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAVITK-AYDSEFLEGEQVEVARVKIVNRQ 1291 Query: 235 LDES----IYYRAILLGITRA 185 + + + LLGIT+A Sbjct: 1292 REAEGKPPVEFERELLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 5e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_WIGBR (Q8D232) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 58.2 bits (139), Expect(2) = 5e-19 Identities = 62/200 (31%), Positives = 86/200 (43%), Gaps = 42/200 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 518 G + GD L E S DIT GLP+V +FEAR I S + Sbjct: 1112 GTKINSGDVLARLSLETSGIKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKG 1171 Query: 517 -RRI--------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 416 RR+ + + E IP R L V G + I+ S Sbjct: 1172 KRRLVISPINGSDVYEEMIPKWRHLNVFEGERVEKGDVISDGPESPHDILRLRGVHAVTK 1231 Query: 415 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 239 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + +G + FL GE R A Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLKKATIL-NGSQSEFLEGEQTEFSRIRIANN 1290 Query: 238 ALDES--IYYRAILLGITRA 185 S I Y LLGIT++ Sbjct: 1291 NTKSSDKINYSRDLLGITKS 1310 Score = 55.8 bits (133), Expect(2) = 5e-19 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL ++A+ G+ID L+GLKENV+ G Sbjct: 1312 LATESFISAASFQETTRVLTESAVSGKIDELRGLKENVIVG 1352
>RPOC_LEGPH (Q5ZYP9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 58.2 bits (139), Expect(2) = 5e-19 Identities = 65/208 (31%), Positives = 97/208 (46%), Gaps = 43/208 (20%) Frame = -2 Query: 679 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------ 518 A VN G ++ GD + E+S++ DIT GLP+V +FEAR + E Sbjct: 1099 AIVNFEDGSLVGIGDVIARIPQERSKTRDITGGLPRVADLFEARKPKDSAVMAEVSGLVN 1158 Query: 517 --------RRI-----EDW--NERIP--RILGVPWGFLIGAELTIAQSRIS--------- 416 RR+ ED E IP R + V G + IA+ ++ Sbjct: 1159 FGKETKGKRRLIINVSEDQCHEELIPKWRHISVFEGEHVERGEIIAEGALNPHDILRLLG 1218 Query: 415 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---G 266 +VN++Q VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + Sbjct: 1219 VGALANYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESA 1277 Query: 265 LLRAERAGRALDESIYY-RAILLGITRA 185 +L+ A + I ILLGIT+A Sbjct: 1278 MLQENDKLLAEGKQIARGTPILLGITKA 1305 Score = 55.8 bits (133), Expect(2) = 5e-19 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G++D L+GLKENV+ G Sbjct: 1307 LATESFISAASFQETTRVLTEAAVSGKVDELRGLKENVMVG 1347
>RPOC_LEGPA (Q5X865) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 58.2 bits (139), Expect(2) = 5e-19 Identities = 65/208 (31%), Positives = 97/208 (46%), Gaps = 43/208 (20%) Frame = -2 Query: 679 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------ 518 A VN G ++ GD + E+S++ DIT GLP+V +FEAR + E Sbjct: 1099 AIVNFEDGSLVGIGDVIARIPQERSKTRDITGGLPRVADLFEARKPKDSAVMAEVSGLVN 1158 Query: 517 --------RRI-----EDW--NERIP--RILGVPWGFLIGAELTIAQSRIS--------- 416 RR+ ED E IP R + V G + IA+ ++ Sbjct: 1159 FGKETKGKRRLIINVSEDQCHEELIPKWRHISVFEGEHVERGEIIAEGALNPHDILRLLG 1218 Query: 415 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---G 266 +VN++Q VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + Sbjct: 1219 VGALANYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESA 1277 Query: 265 LLRAERAGRALDESIYY-RAILLGITRA 185 +L+ A + I ILLGIT+A Sbjct: 1278 MLQENDKLLAEGKQIARGTPILLGITKA 1305 Score = 55.8 bits (133), Expect(2) = 5e-19 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G++D L+GLKENV+ G Sbjct: 1307 LATESFISAASFQETTRVLTEAAVSGKVDELRGLKENVMVG 1347
>RPOC_PASMU (Q9CK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1417 Score = 59.3 bits (142), Expect(2) = 7e-19 Identities = 60/195 (30%), Positives = 91/195 (46%), Gaps = 43/195 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------------IDSLSPNLE--RRI-- 509 G+ L E + DIT GLP+V +FEAR I S + RR+ Sbjct: 1119 GEPLARIPQESVGTKDITGGLPRVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLI 1178 Query: 508 -----EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS--------LVNKIQ 398 E + E IP R L V G ++ GAE R+ +VN++Q Sbjct: 1179 TPAEGETYEEMIPKWRQLNVFEGEMVERGDLISDGAETPHDILRLRGVHAVTEYIVNEVQ 1238 Query: 397 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES-- 224 +VYR QGV+I+++HIE+I+RQ+ K V++ + FL GE + + R + R + Sbjct: 1239 EVYRLQGVKINDKHIEVIVRQMLRKGIVTK-AYDSEFLEGEQVEVARVKIVNRKREAEGK 1297 Query: 223 --IYYRAILLGITRA 185 + + LLGIT+A Sbjct: 1298 PLVEFERELLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 7e-19 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_PELCD (Q3A6Q3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 59.7 bits (143), Expect(2) = 7e-19 Identities = 27/41 (65%), Positives = 36/41 (87%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SFIS ASFQET +VL +AA+ G+ID+L+GLKENV+ G Sbjct: 1300 LSTESFISAASFQETTKVLTQAAIEGKIDYLRGLKENVIMG 1340 Score = 53.9 bits (128), Expect(2) = 7e-19 Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 43/209 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL 521 GA + E + G L E +++ DIT GLP+V ++FEAR I + + Sbjct: 1091 GAIIVASEDETVSGGAILAKIPRETTKTKDITGGLPRVAELFEARKPKEYAIISEIDGVV 1150 Query: 520 ERRIEDWNERIPRI---LGVPWGFLI----------GAELTIAQSRIS------------ 416 + +R + +G P +LI G + ++ + Sbjct: 1151 SFGKDSKGKRKVHVTPEVGSPKEYLIPKGKHISVHEGDHIKAGEALMDGSSNPHDILRVL 1210 Query: 415 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 260 LV+++Q+VYR QGV+I+++HIE+I+RQ+ +VR+ E G + FL + + Sbjct: 1211 GEKELAKYLVDEVQEVYRLQGVKINDKHIEVIVRQMLRRVRIKEPGNTR-FLADDQVERW 1269 Query: 259 RAERAGRAL----DESIYYRAILLGITRA 185 E R + ++LGIT+A Sbjct: 1270 EFECENRKVVGEGGAPAVGEPLMLGITKA 1298
>RPOC_CORJK (Q4JT33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1323 Score = 65.5 bits (158), Expect(2) = 7e-19 Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 4/81 (4%) Frame = -2 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI----GLLRAER 248 L+N++QKVYR QGV IH++HIEII+RQ+ +V V + G S FLPG L+ + ++ Sbjct: 1142 LINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSG-STEFLPGSLVDHADAVAASKE 1200 Query: 247 AGRALDESIYYRAILLGITRA 185 A + + RA ++GIT+A Sbjct: 1201 AVKTGGRPVEVRAEIMGITKA 1221 Score = 48.1 bits (113), Expect(2) = 7e-19 Identities = 25/41 (60%), Positives = 30/41 (73%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+S++S ASFQET RVL AA+ R D L GLKENV+ G Sbjct: 1223 LATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENVIIG 1263
>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 65.5 bits (158), Expect(2) = 7e-19 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 4/84 (4%) Frame = -2 Query: 424 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 245 +I LV ++Q+VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAE 1189 Query: 244 GRAL----DESIYYRAILLGITRA 185 R + E R +L+GIT+A Sbjct: 1190 NRRVVAEGGEPAAGRPVLMGITKA 1213 Score = 48.1 bits (113), Expect(2) = 7e-19 Identities = 25/41 (60%), Positives = 29/41 (70%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T S++S ASFQET RVL AA+ R D L GLKENV+ G Sbjct: 1215 LATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIG 1255
>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 65.5 bits (158), Expect(2) = 7e-19 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 4/84 (4%) Frame = -2 Query: 424 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 245 +I LV ++Q+VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAE 1189 Query: 244 GRAL----DESIYYRAILLGITRA 185 R + E R +L+GIT+A Sbjct: 1190 NRRVVAEGGEPAAGRPVLMGITKA 1213 Score = 48.1 bits (113), Expect(2) = 7e-19 Identities = 25/41 (60%), Positives = 29/41 (70%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T S++S ASFQET RVL AA+ R D L GLKENV+ G Sbjct: 1215 LATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIG 1255
>RPOC_DEHSC (Q3ZX00) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1295 Score = 60.1 bits (144), Expect(2) = 7e-19 Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 4/162 (2%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRI 479 GE+ +G+ L+T Y +S + T +P QI + ++ D++ +++ D + I Sbjct: 1070 GEVTVEGN-LITIKYSESEEREYT--IPAAMQI-KVKTGDTIRAG--QQLTDGSINPQDI 1123 Query: 478 LGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGM 299 L + +G + + LV ++QKVY SQGV I+++HIE+I RQ+ KVR+ G Sbjct: 1124 LSI-----LGRDAV----QKYLVEEVQKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGD 1174 Query: 298 SNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 +++ +PGEL+ R E + E +L+GITRA Sbjct: 1175 TDL-VPGELVDKFRYEDINAKVLAEGGEPATAHTVLMGITRA 1215 Score = 53.5 bits (127), Expect(2) = 7e-19 Identities = 25/41 (60%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+S+++ ASFQET RVL AA+ GR+D L GLKENV+ G Sbjct: 1217 LSTESWLAAASFQETTRVLTDAAIYGRVDKLSGLKENVIIG 1257 Score = 30.8 bits (68), Expect = 4.1 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 5/44 (11%) Frame = -2 Query: 595 DITQGLPKVEQIFEAR-----SIDSLSPNLERRIEDWNERIPRI 479 DIT GLP+VE++FEAR SI S + IE+ N R RI Sbjct: 970 DITTGLPRVEELFEARPPKVQSIISEIDGVVEVIENENGRHIRI 1013
>RPOC_PROAC (Q6A6K7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1293 Score = 63.5 bits (153), Expect(2) = 7e-19 Identities = 62/190 (32%), Positives = 87/190 (45%), Gaps = 53/190 (27%) Frame = -2 Query: 595 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNER-----------------IPRI 479 DITQGLP+V ++FEARS SP E RI++ + R +PR Sbjct: 1006 DITQGLPRVVELFEARSPKGKSPLAEAAGVIRIDESDNRRKLVLVRDDGEDDVEYVVPRR 1065 Query: 478 LGVPWGFLIGAELTIAQS--------------------RIS--------LVNKIQKVYRS 383 + + L G I RIS LV ++QKVY + Sbjct: 1066 ARLEFD-LDGTHRVIRDGVRVAAGEQLMGGTADPQDVLRISGVRRVQEYLVKEVQKVYNT 1124 Query: 382 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR-ALDES---IYY 215 QG IH +HIEI+IRQ+ ++ V E G + + +PGEL+ E A R A+ E Sbjct: 1125 QGAGIHEKHIEIVIRQMLRRITVIESGDTQM-MPGELVDRGAYEAANRKAVAEGGRPAEG 1183 Query: 214 RAILLGITRA 185 R +L+GIT+A Sbjct: 1184 RPVLMGITKA 1193 Score = 50.1 bits (118), Expect(2) = 7e-19 Identities = 24/41 (58%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+S++S ASFQET +VL AA+ G+ D L GLKENV+ G Sbjct: 1195 LATESWLSAASFQETTKVLTDAAINGKTDTLVGLKENVILG 1235
>RPOC_MANSM (Q65W40) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 58.5 bits (140), Expect(2) = 1e-18 Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 43/195 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------------IDSLSPNLE--RRI-- 509 G+ L E + DIT GLP+V +FEAR I S + RR+ Sbjct: 1119 GEPLARIPQESVGTKDITGGLPRVADLFEARKPKEPAILAEITGIVSFGKETKGKRRLVI 1178 Query: 508 -----EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS--------LVNKIQ 398 E + E IP R L V G ++ GAE R+ +VN++Q Sbjct: 1179 TPVEGEAYEEMIPKWRQLNVFEGEMVERGDVISDGAETPHDILRLRGVHAVTEYIVNEVQ 1238 Query: 397 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES-- 224 +VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R + Sbjct: 1239 EVYRLQGVKINDKHIEVIVRQMLRKGIITK-AYDSEFLEGEQVEVARVKIVNRKREAEGK 1297 Query: 223 --IYYRAILLGITRA 185 + + LLGIT+A Sbjct: 1298 PPVEFERELLGITKA 1312 Score = 54.3 bits (129), Expect(2) = 1e-18 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_NITEU (Q82T76) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 58.9 bits (141), Expect(2) = 2e-18 Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 43/209 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER---- 515 G+ + G+ + G+ L E S++ DIT GLP+V ++FEAR + E Sbjct: 1117 GSIITVRDGQQVNIGEVLARIPQETSKTRDITGGLPRVAELFEARVPKDVGFLAEATGTV 1176 Query: 514 ---RIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 404 + +R I + GV +LI + + +VNK Sbjct: 1177 AFGKDTKGKQRLVITDLDGVAHEYLIPKDKHVTAHDGQVVNKGEVIVDGPIDPHDILRLQ 1236 Query: 403 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 266 +Q VYR QGV+I+++HIE+I+RQ+ +V++ G S+ F+PGE + Sbjct: 1237 GVEALARYISNEVQDVYRLQGVRINDKHIEVIVRQMLRRVQIMNAGDSS-FIPGEQVERA 1295 Query: 265 --LLRAERAGRALDESIYYRAILLGITRA 185 L E+ Y +LLGIT+A Sbjct: 1296 EVLTENEKLIAENKMPATYEYVLLGITKA 1324 Score = 53.5 bits (127), Expect(2) = 2e-18 Identities = 26/41 (63%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +A++ G+ D L+GLKENV+ G Sbjct: 1326 LSTDSFISAASFQETTRVLTEASIMGKKDDLRGLKENVIVG 1366
>RPOC_EHRRW (Q5HC04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 60.8 bits (146), Expect(2) = 2e-18 Identities = 57/219 (26%), Positives = 98/219 (44%), Gaps = 46/219 (21%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 509 GA ++ G+ ++ GD + E ++ DIT GLP+V ++FEAR ++ +++ + Sbjct: 1097 GAVLSVQDGQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPKEHAIVSDIDGYV 1156 Query: 508 E---DWNERIPRILGVPWGFLIG-AELTIAQSRISLVNK--------------------- 404 E D+ RI P + E + + + ++VN+ Sbjct: 1157 EFGKDYYRSKRRIFIKPVDDKLSPVEYLVPKGKHTIVNEGDFVHKGDLLMDGDPDPHDIL 1216 Query: 403 ---------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 269 IQ+VYR QGV+I N+HIE+I+RQ+ KV + E G ++L GE + Sbjct: 1217 RVLGVEALANYMIAEIQQVYRLQGVRIDNKHIEVILRQMLQKVEIFEPG-DTMYLVGENV 1275 Query: 268 GLLRAERAGRALDE----SIYYRAILLGITRAXPEYPKF 164 + + +++ Y IL GITRA + F Sbjct: 1276 DVEEVLKTNSNMEKIGKSPAKYIPILQGITRASLDTNSF 1314 Score = 51.2 bits (121), Expect(2) = 2e-18 Identities = 25/41 (60%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SF+S ASFQET +VL +AA G+ D L GLKENV+ G Sbjct: 1309 LDTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLKENVIVG 1349
>RPOC_DEHE1 (Q3Z8V3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1295 Score = 59.7 bits (143), Expect(2) = 2e-18 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 4/81 (4%) Frame = -2 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 236 LV ++QKVY SQGV I+++HIE+I RQ+ KVR+ G +++ +PGEL+ R E Sbjct: 1136 LVEEVQKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGDTDL-VPGELVDKFRYEDINAK 1194 Query: 235 L----DESIYYRAILLGITRA 185 + E +L+GITRA Sbjct: 1195 VLAEGGEPATAHTVLMGITRA 1215 Score = 52.4 bits (124), Expect(2) = 2e-18 Identities = 24/41 (58%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+S+++ ASFQET RVL AA+ G++D L GLKENV+ G Sbjct: 1217 LSTESWLAAASFQETTRVLTDAAIYGKVDKLSGLKENVIIG 1257 Score = 30.0 bits (66), Expect = 6.9 Identities = 12/16 (75%), Positives = 15/16 (93%) Frame = -2 Query: 595 DITQGLPKVEQIFEAR 548 DIT GLP+VE++FEAR Sbjct: 970 DITTGLPRVEELFEAR 985
>RPOC_EHRRG (Q5FFD8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 60.5 bits (145), Expect(2) = 3e-18 Identities = 57/219 (26%), Positives = 98/219 (44%), Gaps = 46/219 (21%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 509 GA ++ G+ ++ GD + E ++ DIT GLP+V ++FEAR ++ +++ + Sbjct: 1097 GAVLSVQDGQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPKEHAIVSDIDGYV 1156 Query: 508 E---DWNERIPRILGVPWGFLIG-AELTIAQSRISLVNK--------------------- 404 E D+ RI P + E + + + ++VN+ Sbjct: 1157 EFGKDYYRSKRRIFIKPVDDKLSPVEYLVPKGKHTIVNEGDFVHKGDLLMDGDPDPHDIL 1216 Query: 403 ---------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 269 IQ+VYR QGV+I N+HIE+I+RQ+ KV + E G ++L GE + Sbjct: 1217 RVLGVEALANYMIAEIQQVYRLQGVRIDNKHIEVILRQMLQKVEIFEPG-DTMYLIGENV 1275 Query: 268 GLLRAERAGRALDE----SIYYRAILLGITRAXPEYPKF 164 + + +++ Y IL GITRA + F Sbjct: 1276 DVEEVLKTNSNMEKIGKSPAKYIPILQGITRASLDTNSF 1314 Score = 51.2 bits (121), Expect(2) = 3e-18 Identities = 25/41 (60%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SF+S ASFQET +VL +AA G+ D L GLKENV+ G Sbjct: 1309 LDTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLKENVIVG 1349
>RPOC_IDILO (Q5QWA4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 56.6 bits (135), Expect(2) = 3e-18 Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 47/199 (23%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 509 GD L E S++ DIT GLP+V +FEAR + E RR+ Sbjct: 1118 GDTLARIPQEGSKTRDITGGLPRVADLFEARKPKEPAILAEKTGTVSFGKETKGKRRLLI 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 + E IP R L V G + IA + +VN++ Sbjct: 1178 TPTDGGDQHEEMIPKWRQLNVFEGEQVTKGEVIADGPEAPHDILRLRGVSAVANYIVNEV 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL-------LRAERAG 242 Q+VYR QGV+I+++HIE I+RQ+ K + G +N+ L GE++ + +AE G Sbjct: 1238 QEVYRLQGVKINDKHIETIVRQMLRKALILRAGDTNL-LEGEMVEMSEVLAANAKAEADG 1296 Query: 241 RALDESIYYRAILLGITRA 185 + + + LLGIT+A Sbjct: 1297 K---KPAIFERQLLGITKA 1312 Score = 55.1 bits (131), Expect(2) = 3e-18 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1314 LSTESFISAASFQETTRVLTEAAVGGKKDSLRGLKENVIVG 1354
>RPOC_RICCN (Q9RH40) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 57.4 bits (137), Expect(2) = 3e-18 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G++D L+GLKENV+ G Sbjct: 1306 LQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENVIVG 1346 Score = 54.3 bits (129), Expect(2) = 3e-18 Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 40/178 (22%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 509 GA ++ G + GD + E + + DIT GLP+V ++ EAR ++ ++ R+ Sbjct: 1096 GAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAEIDGRV 1155 Query: 508 E---DWNERIPRILG-----------VPWG---------FLIGAELTIAQSRIS------ 416 E D+ + I+ VP G F+ +L I + + Sbjct: 1156 EFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGDLLIDGNPVLQDILKV 1215 Query: 415 ---------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 269 +VN++Q VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I Sbjct: 1216 MGVEVLANYIVNEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKI 1272
>RPOC_SYMTH (Q67JT4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1179 Score = 60.1 bits (144), Expect(2) = 3e-18 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 42/179 (23%) Frame = -2 Query: 595 DITQGLPKVEQIFEARSI--DSLSPNLERRIEDWNERIPRIL------------GVPWGF 458 DITQGLP+VE++FEAR ++ L+ + ++ R + +P+G Sbjct: 927 DITQGLPRVEELFEARKPKGQAIIAELDGEVSITEQKGRREITITSEDGESVTYSIPYGA 986 Query: 457 LI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHIE 350 + G ELT + + L+ ++QKVY QGV I+++HIE Sbjct: 987 RVKVRSGQFVEAGDELTEGSVNPHDLLRVKGLRGVQRYLLREVQKVYNLQGVDINDKHIE 1046 Query: 349 IIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-RALDES---IYYRAILLGITRA 185 I++RQ+ KV+V + G +++ LPG + + E R + E R +LLGIT+A Sbjct: 1047 IMVRQMLRKVKVEDPGDTDL-LPGGFVDIFDFEDENERVIMEGGVPAVARPMLLGITKA 1104 Score = 51.6 bits (122), Expect(2) = 3e-18 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1106 LATDSFLSAASFQETTRVLTDAAIKGKRDPLLGLKENVIIG 1146
>RPOC_PSYAR (Q4FQH4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 56.2 bits (134), Expect(2) = 3e-18 Identities = 28/41 (68%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL AA+ G++D L+GLKENVV G Sbjct: 1307 LATESFISAASFQETTRVLTAAAVTGKVDELRGLKENVVVG 1347 Score = 55.1 bits (131), Expect(2) = 3e-18 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%) Frame = -2 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 236 +VN++Q VYR QGV+I+++HIE+IIRQ+ KV +++ G SN F G+ + + Sbjct: 1226 IVNEVQDVYRLQGVKINDKHIEVIIRQMLRKVEITDGGDSNHF-KGDQVEYADIKALNAK 1284 Query: 235 LDES----IYYRAILLGITRA 185 L+ + + LLGIT+A Sbjct: 1285 LEAEDKFPVQFERQLLGITKA 1305
>RPOC_BUCBP (Q89B21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 59.3 bits (142), Expect(2) = 3e-18 Identities = 59/196 (30%), Positives = 87/196 (44%), Gaps = 44/196 (22%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 509 GD L E + DIT GLP+V +FEAR L+ E RR+ Sbjct: 1118 GDTLARIPQESGGTKDITGGLPRVADLFEARRPKELAILAEISGFISFGKDTKGKRRLII 1177 Query: 508 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 401 + E IP R L V G + I+ S ++N++ Sbjct: 1178 TPYNNNTPYEEMIPKWRQLNVFEGERVEKGDVISDGPESPHDILRLRGVQAVTKYIINEV 1237 Query: 400 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD--- 230 Q+VYR QGV+I+++HIE+IIRQ+ K + + S FL GE + R + + R L Sbjct: 1238 QEVYRLQGVKINDKHIEVIIRQMLRKATIIKSEHSE-FLDGEQVEYSRIKVSNRNLSKIG 1296 Query: 229 -ESIYYRAILLGITRA 185 ++ + LLGIT+A Sbjct: 1297 KKTAIFSRDLLGITKA 1312 Score = 52.0 bits (123), Expect(2) = 3e-18 Identities = 25/41 (60%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL ++++ G+ D L+GLKENV+ G Sbjct: 1314 LATESFISAASFQETTRVLTESSVAGKKDELRGLKENVIVG 1354
>RPOC_LEPIN (Q8F0S3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 56.6 bits (135), Expect(2) = 3e-18 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 45/203 (22%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER--RIEDWNERI- 488 G+IL+K + + EK+R DIT GLP+V+++FEAR + E +IE E + Sbjct: 1117 GDILFK----IPTVAEKTR--DITGGLPRVDELFEARRPKDATTLAETDGKIEISGEIVK 1170 Query: 487 -----------PRILGVPWGFLIGAELTIAQS---------------------------- 425 P + V IG ++ + Sbjct: 1171 EKRVLYIHPDNPDLEKVKVTIPIGKQIRVRNGDFVKRGDQIDDGNLDPHDILRVKGVTAL 1230 Query: 424 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 245 ++ LV ++Q+VYR QGV I+++HIE+++RQ+ KV +++ G ++ ++ L+ E Sbjct: 1231 QVYLVQEVQEVYRLQGVHINDKHIEVVVRQMLRKVLITDSGDTSFVNQQQIDRLVFNEEN 1290 Query: 244 GRALDES---IYYRAILLGITRA 185 R + E ILLG+T+A Sbjct: 1291 KRVIAEGGSPAESVPILLGLTKA 1313 Score = 54.7 bits (130), Expect(2) = 3e-18 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT+SF S ASFQET +VL AA++G+ D L GLKENV+ G Sbjct: 1315 LNTESFFSAASFQETTKVLTDAAIKGKTDNLMGLKENVIIG 1355
>RPOC_LEPIC (Q72UA7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 56.6 bits (135), Expect(2) = 3e-18 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 45/203 (22%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER--RIEDWNERI- 488 G+IL+K + + EK+R DIT GLP+V+++FEAR + E +IE E + Sbjct: 1117 GDILFK----IPTVAEKTR--DITGGLPRVDELFEARRPKDATTLAETDGKIEISGEIVK 1170 Query: 487 -----------PRILGVPWGFLIGAELTIAQS---------------------------- 425 P + V IG ++ + Sbjct: 1171 EKRVLYIHPDNPDLEKVKVTIPIGKQIRVRNGDFVKRGDQIDDGNLDPHDILRVKGVTAL 1230 Query: 424 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 245 ++ LV ++Q+VYR QGV I+++HIE+++RQ+ KV +++ G ++ ++ L+ E Sbjct: 1231 QVYLVQEVQEVYRLQGVHINDKHIEVVVRQMLRKVLITDSGDTSFVNQQQIDRLVFNEEN 1290 Query: 244 GRALDES---IYYRAILLGITRA 185 R + E ILLG+T+A Sbjct: 1291 KRVIAEGGSPAESVPILLGLTKA 1313 Score = 54.7 bits (130), Expect(2) = 3e-18 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 LNT+SF S ASFQET +VL AA++G+ D L GLKENV+ G Sbjct: 1315 LNTESFFSAASFQETTKVLTDAAIKGKTDNLMGLKENVIIG 1355
>RPOC_CHRVO (Q7NQE7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 56.6 bits (135), Expect(2) = 3e-18 Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 43/209 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIF------------------ 557 GA + G+ + KG+ L E S++ DIT GLP+V ++F Sbjct: 1106 GAIITVRDGQDVGKGEVLARIPQESSKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTV 1165 Query: 556 -----------------EARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQ 428 E ++L P + + + + R + G + ++ Q Sbjct: 1166 SFGKDTKGKQRLIITDLEGNGYENLIPKDKHVLVHDGQVVNRGESIVDGPVDPHDILRLQ 1225 Query: 427 SRISL----VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 266 +L V ++Q+VYR QGV+I+++HIE+IIRQ+ +V +++ G F+ GE + Sbjct: 1226 GIEALARYIVQEVQEVYRLQGVKINDKHIEVIIRQMLRRVIITDSG-DTEFIQGEQVERA 1284 Query: 265 --LLRAERAGRALDESIYYRAILLGITRA 185 L ++ E Y +LLGIT+A Sbjct: 1285 DVLEMNDKMMAENKEPAQYENVLLGITKA 1313 Score = 54.7 bits (130), Expect(2) = 3e-18 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1315 LSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVG 1355
>RPOC_RICFE (Q4UKD5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 57.8 bits (138), Expect(2) = 3e-18 Identities = 28/41 (68%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G+ID L+GLKENV+ G Sbjct: 1306 LQTRSFISAASFQETTRVLTEAAIAGKIDKLRGLKENVIVG 1346 Score = 53.5 bits (127), Expect(2) = 3e-18 Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 45/218 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 509 GA ++ G + GD + E + + DIT GLP+V ++ EAR ++ ++ R+ Sbjct: 1096 GAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAEIDGRV 1155 Query: 508 E---DWNERIPRILGVPWGFLIGAELTIAQSRISLVNK---------------------- 404 E D+ + RI+ P + E + + + +VN+ Sbjct: 1156 EFGKDYKSK-RRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGDLLIDGNPVLQDILK 1214 Query: 403 --------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 266 +Q VYR QGV+I ++HIE+IIRQ+ KV +++ G L GE I Sbjct: 1215 VMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEITDSG-GTTLLAGEKID 1273 Query: 265 LLRAERAG-RALDESI---YYRAILLGITRAXPEYPKF 164 E +A+ + + IL GIT+A + F Sbjct: 1274 RHEFEEINEKAIKNGLKPAEAQLILQGITKASLQTRSF 1311
>RPOC_LEGPL (Q5WZL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 55.8 bits (133), Expect(2) = 4e-18 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G++D L+GLKENV+ G Sbjct: 1307 LATESFISAASFQETTRVLTEAAVSGKVDELRGLKENVMVG 1347 Score = 55.1 bits (131), Expect(2) = 4e-18 Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 43/208 (20%) Frame = -2 Query: 679 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------ 518 A VN ++ GD + E+S++ DIT GLP+V +FEAR + E Sbjct: 1099 AIVNFEDRSLVGIGDVIARIPQERSKTRDITGGLPRVADLFEARKPKDSAVMAEVSGLVN 1158 Query: 517 --------RRI-----EDW--NERIP--RILGVPWGFLIGAELTIAQSRIS--------- 416 RR+ ED E IP R + V G + IA+ ++ Sbjct: 1159 FGKETKGKRRLIINVSEDQCHEELIPKWRHISVFEGEHVERGEIIAEGALNPHDILRLLG 1218 Query: 415 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---G 266 +VN++Q VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + Sbjct: 1219 VGALANYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESA 1277 Query: 265 LLRAERAGRALDESIYY-RAILLGITRA 185 +L+ A + I ILLGIT+A Sbjct: 1278 MLQENDKLLAEGKQIARGTPILLGITKA 1305
>RPOC_BLOFL (Q7VRP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 58.5 bits (140), Expect(2) = 7e-18 Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 47/205 (22%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFE------ARSIDSLSPNL-------- 521 G + GD L +E S + DIT GLP+V +FE A + +S + Sbjct: 1120 GSRIISGDVLARLPHETSGTKDITGGLPRVADLFEARRPKEAAILAEISGVISFGKETKG 1179 Query: 520 ERRI-----------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS------------ 416 +RR+ + E IP R L V G + I+ S Sbjct: 1180 KRRLMICSTDENGGENIYEEMIPKWRHLNVFEGEYVERGDVISDGPESPHDILRLRGVHA 1239 Query: 415 ----LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAER 248 +VN++Q+VYR QGV+I+++HIE+IIRQ+ K V G S+ FL GE + R + Sbjct: 1240 VTNYIVNEVQEVYRLQGVKINDKHIEVIIRQMLRKAIVIRSGDSD-FLAGEQVEYARIKI 1298 Query: 247 AGRALDE----SIYYRAILLGITRA 185 + L+ + + LLGIT+A Sbjct: 1299 VNQTLEREGKVKVSFVRNLLGITKA 1323 Score = 51.6 bits (122), Expect(2) = 7e-18 Identities = 25/41 (60%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL ++++ G+ D L+GLKENV+ G Sbjct: 1325 LATESFISAASFQETTRVLTESSVAGKKDDLRGLKENVIVG 1365
>RPOC_FRATT (Q5NID1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1417 Score = 57.0 bits (136), Expect(2) = 7e-18 Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 45/211 (21%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDS---LSP----- 527 GA +N IL GD + E S++ DIT GLP+V ++FEAR LSP Sbjct: 1091 GAVLNVADDSILEVGDIVAKIPLEGSKNKDITGGLPRVAELFEARRPKDAAILSPCDGMV 1150 Query: 526 -------NLERRIE--DWNERIPRILGVPWGFLI----GAELT----------------- 437 ++RIE D N I + +P + G +++ Sbjct: 1151 RLGNRDTKEKQRIEIIDKNGHIVEEILLPKSRHLVVFDGEQVSRGDVLADGPTDPHDLLK 1210 Query: 436 ---IAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 266 + + ++ + Q VYR QGV I+++HIE I+RQ+ K + ++G S F+ E I Sbjct: 1211 YKGLEEFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKAVILDEGDSK-FVKDESIE 1269 Query: 265 LLRA----ERAGRALDESIYYRAILLGITRA 185 L+R ++ + + + Y +L+GITR+ Sbjct: 1270 LVRILEENDKLRKQGKKEVEYELVLMGITRS 1300 Score = 53.1 bits (126), Expect(2) = 7e-18 Identities = 25/41 (60%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SF+S ASFQET RVL +A++ +ID L+GLKENV+ G Sbjct: 1302 LSTESFLSAASFQETTRVLTEASINSQIDNLRGLKENVLIG 1342
>RPOC_SILPO (Q5LMQ6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1413 Score = 57.0 bits (136), Expect(2) = 1e-17 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 46/211 (21%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SID----------- 539 G+++ GD + E +++ DIT GLP+V ++FEAR ID Sbjct: 1106 GQVIEAGDVIARIPREGAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGYVRFGRDYKN 1165 Query: 538 ----SLSPNLERRIEDWNERIPR------------------ILGVPWGFLIGAELTIAQS 425 S+ P+ E +E +P+ + G P I + L + Sbjct: 1166 KRRISIEPSNEA-MEPVEYMVPKGKHIPVQEGDFVQKGDYIMDGNPAPHDILSILGVEAL 1224 Query: 424 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 245 +V ++Q+VYR QGV+I+++HIE+I+RQ+ K +S+ G L GE + + A Sbjct: 1225 ANYMVKEVQEVYRLQGVKINDKHIEVIVRQMLQKWEISDSG-DTTLLKGEHVDKQEFDAA 1283 Query: 244 GRAL----DESIYYRAILLGITRAXPEYPKF 164 ILLGIT+A + F Sbjct: 1284 NEKTIARGGRPASGEPILLGITKASLQTRSF 1314 Score = 52.8 bits (125), Expect(2) = 1e-17 Identities = 26/41 (63%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +A+++G+ D L GLKENV+ G Sbjct: 1309 LQTRSFISAASFQETTRVLTEASVQGKKDKLVGLKENVIVG 1349
>RPOC_RICTY (Q68XM7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 57.4 bits (137), Expect(2) = 1e-17 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G++D L+GLKENV+ G Sbjct: 1306 LQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENVIVG 1346 Score = 52.0 bits (123), Expect(2) = 1e-17 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 41/179 (22%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 509 GA ++ G + GD + E + + DIT GLP+V ++ EAR ++ ++ R+ Sbjct: 1096 GAVLSVEDGIQISVGDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAEVDGRV 1155 Query: 508 E---DWNERIPRILGVPWGFLIGAELTIAQSRISLVNK---------------------- 404 E D+ + RI+ P + E + + + +VN+ Sbjct: 1156 EFGKDYKSK-RRIIIHPIDGTLSIEYMVPKGKHVVVNEGDFVKKGDLLIDGNPVLQDILK 1214 Query: 403 --------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 269 +Q VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I Sbjct: 1215 VMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKI 1272
>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 61.2 bits (147), Expect(2) = 1e-17 Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 4/81 (4%) Frame = -2 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR- 239 L++++Q VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1155 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGSLVDLSEAKLANSE 1213 Query: 238 ---ALDESIYYRAILLGITRA 185 A + R+ ++GIT+A Sbjct: 1214 AIGAGGQPAELRSEIMGITKA 1234 Score = 48.1 bits (113), Expect(2) = 1e-17 Identities = 25/41 (60%), Positives = 30/41 (73%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+S++S ASFQET RVL AA+ R D L GLKENV+ G Sbjct: 1236 LATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENVIIG 1276
>RPOC_RICPR (Q9ZE20) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 57.4 bits (137), Expect(2) = 2e-17 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +AA+ G++D L+GLKENV+ G Sbjct: 1306 LQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENVIVG 1346 Score = 51.6 bits (122), Expect(2) = 2e-17 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 41/179 (22%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 509 GA ++ G + GD + E + + DIT GLP+V ++ EAR ++ ++ R+ Sbjct: 1096 GAVLSVEDGIQISVGDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAEVDGRV 1155 Query: 508 E---DWNERIPRILGVPWGFLIGAELTIAQSRISLVNK---------------------- 404 E D+ + RI+ P + E + + + +VN+ Sbjct: 1156 EFGKDYKSK-RRIIIHPIDGTMSIEYMVPKGKHVVVNEGDFVKKGDLLIDGNPVLQDILK 1214 Query: 403 --------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 269 +Q VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I Sbjct: 1215 VMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKI 1272
>RPOC_CORDI (Q6NJF6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1336 Score = 60.8 bits (146), Expect(2) = 2e-17 Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Frame = -2 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 236 LV+++Q VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1156 LVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGTLVDLSEAKAANAE 1214 Query: 235 L----DESIYYRAILLGITRA 185 + R+ ++GIT+A Sbjct: 1215 ALANGGQPAELRSEIMGITKA 1235 Score = 48.1 bits (113), Expect(2) = 2e-17 Identities = 25/41 (60%), Positives = 30/41 (73%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+S++S ASFQET RVL AA+ R D L GLKENV+ G Sbjct: 1237 LATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENVIIG 1277
>RPOC_COREF (Q8FS96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 60.5 bits (145), Expect(2) = 2e-17 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Frame = -2 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 236 L++++Q VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1155 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGSLVDLSEAKLANSE 1213 Query: 235 L----DESIYYRAILLGITRA 185 + R+ ++GIT+A Sbjct: 1214 AIANGGQPAELRSEIMGITKA 1234 Score = 48.1 bits (113), Expect(2) = 2e-17 Identities = 25/41 (60%), Positives = 30/41 (73%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+S++S ASFQET RVL AA+ R D L GLKENV+ G Sbjct: 1236 LATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENVIIG 1276 Score = 31.2 bits (69), Expect = 3.1 Identities = 13/23 (56%), Positives = 19/23 (82%) Frame = -2 Query: 595 DITQGLPKVEQIFEARSIDSLSP 527 DIT GLP+V+++FEAR +L+P Sbjct: 1038 DITGGLPRVQELFEARVPKNLAP 1060
>RPOC_AZOSE (Q5P338) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 54.7 bits (130), Expect(2) = 3e-17 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1318 LSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVG 1358 Score = 53.5 bits (127), Expect(2) = 3e-17 Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 57/223 (25%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--------------- 548 G+ + G+ + GD L E +++ DIT GLP+V ++FEAR Sbjct: 1109 GSLITVKDGQEVSVGDILARIPQESAKTRDITGGLPRVAELFEARPPKDAGVLAEYTGTV 1168 Query: 547 SIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNK------------ 404 S + +R + I G FLI + + +VNK Sbjct: 1169 SFGKDTKGKQRLV------ITEADGTAHEFLIPKDKHVMVHDGQVVNKGELIVDGPADPH 1222 Query: 403 ------------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPG 278 +Q VYR QGV+I+++HIE+I+RQ+ +V +++ G S Sbjct: 1223 DILRLQGIEALARYIIDEVQDVYRLQGVKINDKHIEVIVRQMLRRVVINDAGNSR----- 1277 Query: 277 ELIGLLRAERAGRA--LDES----------IYYRAILLGITRA 185 +R E+ R+ LDE+ Y+ +LLGIT+A Sbjct: 1278 ----FIREEQVERSEVLDENDRIEAEGKLPAQYQNVLLGITKA 1316
>RPOC_CHLTR (O84316) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 58.5 bits (140), Expect(2) = 3e-17 Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 44/211 (20%) Frame = -2 Query: 685 TGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPN 524 +GA ++ G+ + G L ++ DIT GLP+V ++ EAR I + Sbjct: 1106 SGAIISVEEGQRIAPGMLLARLPRGAIKTKDITGGLPRVAELVEARKPEDAADIAKIDGV 1165 Query: 523 LERRIEDWNERI----PRILGVPWGFLI----------------GAELT----------- 437 ++ + N+RI I G+ LI G +LT Sbjct: 1166 VDFKGIQKNKRILVVRDEITGMEEEHLISLTKHLIVQRGDSVIKGQQLTDGLVVPHEILE 1225 Query: 436 ---IAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 266 + + + LVN++Q+VYR QGV I+++H+EII+RQ+ KVR+++ G L GE + Sbjct: 1226 ICGVRELQKYLVNEVQEVYRLQGVDINDKHVEIIVRQMLQKVRITDPG-DTTLLFGEDVD 1284 Query: 265 LLRAERAGRALDESIYYRA----ILLGITRA 185 R +E A +LLGIT+A Sbjct: 1285 KKEFYEENRRTEEDGGKPAQAVPVLLGITKA 1315 Score = 49.7 bits (117), Expect(2) = 3e-17 Identities = 24/41 (58%), Positives = 29/41 (70%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQ+T RVL AA + D+L G KENV+ G Sbjct: 1317 LGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMG 1357
>RPOC_CHLTA (Q3KM48) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 58.5 bits (140), Expect(2) = 3e-17 Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 44/211 (20%) Frame = -2 Query: 685 TGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPN 524 +GA ++ G+ + G L ++ DIT GLP+V ++ EAR I + Sbjct: 1106 SGAIISVEEGQRIAPGMLLARLPRGAIKTKDITGGLPRVAELVEARKPEDAADIAKIDGV 1165 Query: 523 LERRIEDWNERI----PRILGVPWGFLI----------------GAELT----------- 437 ++ + N+RI I G+ LI G +LT Sbjct: 1166 VDFKGIQKNKRILVVRDEITGMEEEHLISLTKHLIVQRGDSVIKGQQLTDGLVVPHEILE 1225 Query: 436 ---IAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 266 + + + LVN++Q+VYR QGV I+++H+EII+RQ+ KVR+++ G L GE + Sbjct: 1226 ICGVRELQKYLVNEVQEVYRLQGVDINDKHVEIIVRQMLQKVRITDPG-DTTLLFGEDVD 1284 Query: 265 LLRAERAGRALDESIYYRA----ILLGITRA 185 R +E A +LLGIT+A Sbjct: 1285 KKEFYEENRRTEEDGGKPAQAVPVLLGITKA 1315 Score = 49.7 bits (117), Expect(2) = 3e-17 Identities = 24/41 (58%), Positives = 29/41 (70%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQ+T RVL AA + D+L G KENV+ G Sbjct: 1317 LGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMG 1357
>RPOC_CHLMU (Q9PK79) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 58.5 bits (140), Expect(2) = 3e-17 Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 44/211 (20%) Frame = -2 Query: 685 TGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPN 524 +GA ++ G+ + G L ++ DIT GLP+V ++ EAR I + Sbjct: 1106 SGAIISVEEGQRIAPGMLLARLPRGAIKTKDITGGLPRVAELVEARKPEDAADIAKIDGV 1165 Query: 523 LERRIEDWNERI----PRILGVPWGFLI----------------GAELT----------- 437 ++ + N+RI + G+ LI G +LT Sbjct: 1166 VDFKGIQKNKRILVVRDEVTGMEEEHLISLTKHLIVQRGDSVIKGQQLTDGLVVPHEILE 1225 Query: 436 ---IAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 266 + + + LVN++Q+VYR QGV I+++HIEII+RQ+ KVR+++ G L GE + Sbjct: 1226 ICGVRELQKYLVNEVQEVYRLQGVDINDKHIEIIVRQMLQKVRITDPG-DTTLLFGEDVD 1284 Query: 265 LLRAERAGRALDESIYYRA----ILLGITRA 185 R +E A +LLGIT+A Sbjct: 1285 KKEFYEENRRTEEDGGKPAQAVPVLLGITKA 1315 Score = 49.7 bits (117), Expect(2) = 3e-17 Identities = 24/41 (58%), Positives = 29/41 (70%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQ+T RVL AA + D+L G KENV+ G Sbjct: 1317 LGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMG 1357
>RPOC_THET8 (Q8RQE8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 60.8 bits (146), Expect(2) = 4e-17 Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 42/181 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIP----------------- 485 ++DITQGLP+V ++FEAR + + E RIE+ E++ Sbjct: 1249 AADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKE 1308 Query: 484 -RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRH 356 R+L V G + A + + I LV +IQKVYR+QGV++H++H Sbjct: 1309 ARLL-VKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKH 1367 Query: 355 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITR 188 IEI++RQ+ V V++ G S + L G+++ E L + ++ +L+G+T+ Sbjct: 1368 IEIVVRQMMKYVEVTDPGDSRL-LEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTK 1426 Query: 187 A 185 + Sbjct: 1427 S 1427 Score = 47.0 bits (110), Expect(2) = 4e-17 Identities = 23/41 (56%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+S++S ASFQ T VL +AA+ G+ D L GLKENV+ G Sbjct: 1429 LSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILG 1469
>RPOC_DECAR (Q47JA9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1403 Score = 55.1 bits (131), Expect(2) = 4e-17 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1317 LSTDSFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVG 1357 Score = 52.8 bits (125), Expect(2) = 4e-17 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 43/209 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 518 G+ ++ G+ + GD L E +++ DIT GLP+V ++FEAR+ S E Sbjct: 1108 GSIISVVDGQQVGVGDVLARMPQESAKTRDITGGLPRVAELFEARTPKDASVLAEVTGTI 1167 Query: 517 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 404 + +R I + G FLI + + +VNK Sbjct: 1168 SFGKDTKGKQRLVITDLEGNVHEFLISKDKHVLVHDGQVVNKGEKIVEGEPDPHDILRLQ 1227 Query: 403 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 266 +Q VYR QGV+I+++HIE+I+RQ+ +V + E G F+ E + Sbjct: 1228 GIEALARYITDEVQDVYRLQGVKINDKHIEVIVRQMLRRVTIVEPG-DTKFIKSEQVERA 1286 Query: 265 --LLRAERAGRALDESIYYRAILLGITRA 185 L +RA +LLGIT+A Sbjct: 1287 ELLAENDRANAEGKIPATIEHMLLGITKA 1315
>RPOC_THEAQ (Q9KWU6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 60.5 bits (145), Expect(2) = 5e-17 Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 42/180 (23%) Frame = -2 Query: 598 SDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIP------------------ 485 +DITQGLP+V ++FEAR + + E RIE+ +R+ Sbjct: 1250 TDITQGLPRVIELFEARRPKAKAVISEIDGVVRIEEGEDRLSVFVESEGFSKEYKLPKDA 1309 Query: 484 RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHI 353 R+L V G + A + + I LV++IQKVYR+QGV++H++HI Sbjct: 1310 RLL-VKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDKHI 1368 Query: 352 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 185 EI++RQ+ V V++ G S + L G+++ E L + ++ +L+G+T++ Sbjct: 1369 EIVVRQMLKYVEVTDPGDSRL-LEGQVLEKWDVEALNERLIAEGKVPVAWKPLLMGVTKS 1427 Score = 47.0 bits (110), Expect(2) = 5e-17 Identities = 23/41 (56%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+S++S ASFQ T VL +AA+ G+ D L GLKENV+ G Sbjct: 1429 LSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILG 1469
>RPOC_CAMJR (Q5HVY8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1517 Score = 58.5 bits (140), Expect(3) = 6e-17 Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 43/203 (21%) Frame = -2 Query: 664 HYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS---------------IDSLS 530 H G+ + + D L ++S DIT GLP+V ++FEAR D Sbjct: 1253 HDGDKIAQADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPL 1312 Query: 529 PNLERRI---EDWNERIPRI-----LGVPWGFLIGAELTIAQSRIS-------------- 416 + ER I ED I + V G I A + +S Sbjct: 1313 RSKERIIIQAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALH 1372 Query: 415 --LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR----A 254 L+++IQ+VYR QGV I ++HIE+I+ Q+ +V+V + G + F+ G+L+ + Sbjct: 1373 YYLISEIQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTK-FIEGDLVSRRKFREEN 1431 Query: 253 ERAGRALDESIYYRAILLGITRA 185 ER R E +LLG+TRA Sbjct: 1432 ERIIRMGGEPAIAEPVLLGVTRA 1454 Score = 47.4 bits (111), Expect(3) = 6e-17 Identities = 21/41 (51%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 + + S IS ASFQET +VL +A++ G+ D+L+ LKENV+ G Sbjct: 1456 IGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILG 1496 Score = 20.8 bits (42), Expect(3) = 6e-17 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -1 Query: 77 KKT*XLGGIIPVGTG 33 K+ LG +IPVGTG Sbjct: 1490 KENVILGRMIPVGTG 1504
>RPOC_CAMJE (Q9PI30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1517 Score = 58.5 bits (140), Expect(3) = 6e-17 Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 43/203 (21%) Frame = -2 Query: 664 HYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS---------------IDSLS 530 H G+ + + D L ++S DIT GLP+V ++FEAR D Sbjct: 1253 HDGDKIAQADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPL 1312 Query: 529 PNLERRI---EDWNERIPRI-----LGVPWGFLIGAELTIAQSRIS-------------- 416 + ER I ED I + V G I A + +S Sbjct: 1313 RSKERIIIQAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALH 1372 Query: 415 --LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR----A 254 L+++IQ+VYR QGV I ++HIE+I+ Q+ +V+V + G + F+ G+L+ + Sbjct: 1373 YYLISEIQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTK-FIEGDLVSRRKFREEN 1431 Query: 253 ERAGRALDESIYYRAILLGITRA 185 ER R E +LLG+TRA Sbjct: 1432 ERIIRMGGEPAIAEPVLLGVTRA 1454 Score = 47.4 bits (111), Expect(3) = 6e-17 Identities = 21/41 (51%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 + + S IS ASFQET +VL +A++ G+ D+L+ LKENV+ G Sbjct: 1456 IGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILG 1496 Score = 20.8 bits (42), Expect(3) = 6e-17 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -1 Query: 77 KKT*XLGGIIPVGTG 33 K+ LG +IPVGTG Sbjct: 1490 KENVILGRMIPVGTG 1504
>RPOC_THET2 (Q72HM6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1513 Score = 60.1 bits (144), Expect(2) = 6e-17 Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 42/181 (23%) Frame = -2 Query: 601 SSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIP----------------- 485 ++DITQGLP+V ++FEAR + + E RIE+ E++ Sbjct: 1238 AADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKE 1297 Query: 484 -RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRH 356 R+L G + A + + I LV +IQKVYR+QGV++H++H Sbjct: 1298 ARLLAKD-GDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKH 1356 Query: 355 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITR 188 IEI++RQ+ V V++ G S + L G+++ E L + ++ +L+G+T+ Sbjct: 1357 IEIVVRQMMKYVEVTDPGDSRL-LEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTK 1415 Query: 187 A 185 + Sbjct: 1416 S 1416 Score = 47.0 bits (110), Expect(2) = 6e-17 Identities = 23/41 (56%), Positives = 31/41 (75%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+S++S ASFQ T VL +AA+ G+ D L GLKENV+ G Sbjct: 1418 LSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILG 1458
>RPOC_DESPS (Q6AP77) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1349 Score = 56.2 bits (134), Expect(2) = 6e-17 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+SFIS ASFQET +VL AA+ GR+D L GLKENV+ G Sbjct: 1296 LSTESFISAASFQETTKVLTNAAMSGRVDELLGLKENVIMG 1336 Score = 50.8 bits (120), Expect(2) = 6e-17 Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 43/186 (23%) Frame = -2 Query: 613 EKSRSSDITQGLPKVEQIFEARS---------ID---SLSPNLE--RRI-------EDWN 497 E S++ DIT GLP+V ++FE R ID S L+ RR+ E Sbjct: 1110 ETSKTKDITGGLPRVAELFEVRKPKDPAIIARIDGKVSFGKELKGKRRVVVTPEYGEQQE 1169 Query: 496 ERIPRI--LGVPWGFLIGA-----ELTIAQSRIS-----------LVNKIQKVYRSQGVQ 371 +P+ + V G + A E TI + I LV++IQ+VYR QGV+ Sbjct: 1170 YLVPKAKHIIVHEGDYVQAGEPLMEGTIVPNDILSVLGVKALAKFLVDEIQEVYRLQGVK 1229 Query: 370 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR-AERAGRALDESIYYRA---IL 203 I+++HIE+I+RQ+ +V ++ S F+ GE + + E R L E A +L Sbjct: 1230 INDKHIEVIVRQMLKRVHITRANDSK-FMIGENVEWWKFEEERDRLLAEGKKPGAAEPLL 1288 Query: 202 LGITRA 185 LG+T+A Sbjct: 1289 LGVTKA 1294
>RPOC_CHLCV (Q822J2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 57.0 bits (136), Expect(2) = 8e-17 Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 44/184 (23%) Frame = -2 Query: 604 RSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERI----PRILGVPWGFL 455 ++ DIT GLP+V ++ EAR I + ++ + N+RI I G+ L Sbjct: 1131 KTKDITGGLPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHL 1190 Query: 454 I----------------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIH 365 I G +LT + + + LVN++Q+VYR QGV I+ Sbjct: 1191 IPLTKHLIVQRGDNVMKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDIN 1250 Query: 364 NRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA----ILLG 197 ++HIEII+RQ+ KVR+++ G L GE + R +E A +LLG Sbjct: 1251 DKHIEIIVRQMLQKVRITDPG-DTTLLFGEEVNKKEFYEENRRTEEDGGKPAQAVPVLLG 1309 Query: 196 ITRA 185 IT+A Sbjct: 1310 ITKA 1313 Score = 49.7 bits (117), Expect(2) = 8e-17 Identities = 24/41 (58%), Positives = 29/41 (70%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQ+T RVL AA + D+L G KENV+ G Sbjct: 1315 LGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMG 1355
>RPOC_CHLPN (Q9Z999) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 57.4 bits (137), Expect(2) = 1e-16 Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 44/211 (20%) Frame = -2 Query: 685 TGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPN 524 +GA ++ G+ + G L ++ DIT GLP+V ++ EAR I + Sbjct: 1104 SGAIISVEEGQRVDPGMLLARLPRGAIKTKDITGGLPRVAELVEARKPEDAADIAKIDGV 1163 Query: 523 LERRIEDWNERI----PRILGVPWGFLI----------------GAELT----------- 437 ++ + N+RI + G+ LI G +LT Sbjct: 1164 VDFKGIQKNKRILVVCDEMTGMEEEHLIPLTKHLIVQRGDSVIKGQQLTDGLVVPHEILE 1223 Query: 436 ---IAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 266 + + + LVN++Q+VYR QGV I+++HIEII+RQ+ KVR+++ G L GE + Sbjct: 1224 ICGVRELQKYLVNEVQEVYRLQGVDINDKHIEIIVRQMLQKVRITDPG-DTTLLFGEDVN 1282 Query: 265 LLRAERAGRALDESIYYRA----ILLGITRA 185 R +E A +LLGIT+A Sbjct: 1283 KKEFYEENRRTEEDGGKPAQAVPVLLGITKA 1313 Score = 48.9 bits (115), Expect(2) = 1e-16 Identities = 24/41 (58%), Positives = 29/41 (70%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQ+T RVL AA + D+L G KENV+ G Sbjct: 1315 LGTESFISAASFQDTTRVLTDAACCSKTDYLLGFKENVIMG 1355
>RPOC_DESDG (Q30X04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1386 Score = 55.8 bits (133), Expect(2) = 1e-16 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T SFIS ASFQET +VL +A+LRG+ D L+GLKENV+ G Sbjct: 1303 LTTSSFISAASFQETTKVLTEASLRGKNDHLRGLKENVIVG 1343 Score = 50.4 bits (119), Expect(2) = 1e-16 Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 44/210 (20%) Frame = -2 Query: 682 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SIDSL- 533 GA + G+ + GD + E S++ DI GLP+V ++FE R ID + Sbjct: 1094 GAILMVRDGQEITAGDIIARKPRESSKTKDIVGGLPRVAELFEVRKPKDMAVVSQIDGIV 1153 Query: 532 ----SPNLERRI----EDWNER---IP--RILGVPWGFLIGAELTIAQSRISL------- 413 +R++ E +E+ +P + + V G + A + + L Sbjct: 1154 TFAGETKGKRKLVVTPETGDEKEYLVPKGKHITVTDGDFVEAGEMLTEGHPELHDILGVK 1213 Query: 412 ---------VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI--G 266 V +IQ VYR QGV I ++HIE+I+RQ+ KV V + G ++ FL GE + Sbjct: 1214 GEKYLANYLVEEIQDVYRFQGVGIDDKHIEVIVRQMLKKVTVLDPGQTS-FLVGEQVDKA 1272 Query: 265 LLRAERAGRALDES---IYYRAILLGITRA 185 R E +A++E ++LGIT+A Sbjct: 1273 EFRIENQ-KAIEEGRTPATAEPLVLGITQA 1301
>RPOC_MYCMS (Q6MRX5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1255 Score = 57.0 bits (136), Expect(2) = 1e-16 Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 40/149 (26%) Frame = -2 Query: 595 DITQGLPKVEQIFE------ARSIDSLSPNLERRIEDWN-----------ERIPR----- 482 DITQGLP+++++ + A +I S + IED+N E + + Sbjct: 1007 DITQGLPRIKELLDVTTPKGAVAIISEVDGVVSEIEDYNGVFVINIVTENEEVKKYKTEF 1066 Query: 481 --ILGVPWGFLIGAELTIAQSRISL----------------VNKIQKVYRSQGVQIHNRH 356 +L V G + A + + I L + ++QKVYR QG++I +++ Sbjct: 1067 NSVLRVEQGSSVVAGQKLTEGAIDLHQLLEFGGIQDVQNYILKEVQKVYRLQGIEISDKY 1126 Query: 355 IEIIIRQVTSKVRVSEDGMSNVFLPGELI 269 IEIII+Q+ +KV++++ G S++ LPGE+I Sbjct: 1127 IEIIIKQMLNKVKITDGGDSDL-LPGEVI 1154 Score = 49.3 bits (116), Expect(2) = 1e-16 Identities = 22/41 (53%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L + S++S ASFQ+TARVL +A ++G+ D L+GLKEN++ G Sbjct: 1188 LESSSWLSSASFQDTARVLTRAIIKGKEDKLEGLKENIMLG 1228
>RPOC_CAUCR (Q9AAU1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 54.7 bits (130), Expect(2) = 1e-16 Identities = 26/41 (63%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +A++ G+ D L+GLKENV+ G Sbjct: 1310 LQTKSFISAASFQETTRVLTEASVHGKTDTLEGLKENVIVG 1350 Score = 51.2 bits (121), Expect(2) = 1e-16 Identities = 60/224 (26%), Positives = 99/224 (44%), Gaps = 49/224 (21%) Frame = -2 Query: 688 TTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSP 527 + GA ++ G+ + G+ + E +++ DIT GLP+V ++FEAR I + Sbjct: 1093 SAGAILSVADGDEVKPGEVIARIPTEGAKTRDITGGLPRVAELFEARRPKDCAVIAEMDG 1152 Query: 526 NLE--------RRIE-------DWNERIPRILGVPWGFLI----GAELTIAQSRIS---- 416 +E RRI+ D N+ +P G I G +T + I Sbjct: 1153 RVEFGKDYKNKRRIKITPDVDADGNQPEAVEFLIPKGKHIAVHDGDYITKGEYIIDGNPD 1212 Query: 415 ----------------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFL 284 LV++IQ+VYR QGV I+++HIE I+RQ+ KV + E G + + + Sbjct: 1213 PHDILRILGVEALANFLVDEIQEVYRLQGVPINDKHIETIVRQMLQKVEILEPGDTGL-I 1271 Query: 283 PGELIGL----LRAERAGRALDESIYYRAILLGITRAXPEYPKF 164 G+ + E+A + +LLGIT+A + F Sbjct: 1272 KGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGITKASLQTKSF 1315
>RPOBC_WOLSU (Q7MA56) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2883 Score = 57.8 bits (138), Expect(2) = 2e-16 Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 44/185 (23%) Frame = -2 Query: 607 SRSSDITQGLPKVEQIFEARS---------IDS---------------LSPNLERRIEDW 500 ++S DIT GLP+V ++FEAR ID ++ + R E Sbjct: 2635 AKSKDITGGLPRVSELFEARKPKDPAVLAEIDGVVSFGKPIRGKERIIITADDGRTTEYA 2694 Query: 499 NERIPRILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQI 368 ++ IL V G + A +I +S +V+++Q+VYR QGV I Sbjct: 2695 VDKSKHIL-VHHGEFVHAGESITDGIVSSHDILRISGEKELHKYIVSEVQQVYRRQGVNI 2753 Query: 367 HNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL----RAERAGRALDESIYYRAILL 200 ++HIEII+ Q+ +VR+ + G + F+ G+L+ ER R E +LL Sbjct: 2754 ADKHIEIIVSQMLRQVRIVDSG-NTKFIEGDLVSKRHFKEENERTIRLGGEPAIAEPVLL 2812 Query: 199 GITRA 185 GITRA Sbjct: 2813 GITRA 2817 Score = 47.8 bits (112), Expect(2) = 2e-16 Identities = 25/53 (47%), Positives = 34/53 (64%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXGGDYTCWXRIXKN 22 + + S IS ASFQET +VL +A++ +ID+L+ LKENVV G I KN Sbjct: 2819 IGSDSIISAASFQETTKVLTEASIAAKIDFLEDLKENVVLGRMIPVGTGIYKN 2871
>RPOC_RHOS4 (Q3J5S9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 52.8 bits (125), Expect(2) = 2e-16 Identities = 26/41 (63%), Positives = 33/41 (80%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL +A+++G+ D L GLKENV+ G Sbjct: 1310 LQTRSFISAASFQETTRVLTEASVQGKRDKLVGLKENVIVG 1350 Score = 52.8 bits (125), Expect(2) = 2e-16 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 4/88 (4%) Frame = -2 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-R 239 +++++Q+VYR QGV+I+++HIE+I+RQ+ K + + G L GE + + + Sbjct: 1229 MIDEVQEVYRLQGVKINDKHIEVIVRQMLQKYEILDSG-ETTLLKGEHVDKAELDEVNQK 1287 Query: 238 ALDESI---YYRAILLGITRAXPEYPKF 164 A+D + + ILLGIT+A + F Sbjct: 1288 AMDHGMRPAHAEPILLGITKASLQTRSF 1315 Score = 34.7 bits (78), Expect = 0.28 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = -2 Query: 658 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 548 G+ + GD + E +R+ DIT GLP+V ++FEAR Sbjct: 1107 GQTVRAGDVVARIPREGARTKDITGGLPRVAELFEAR 1143
>RPOC_AQUPY (Q9X6Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1576 Score = 54.3 bits (129), Expect(2) = 2e-16 Identities = 26/41 (63%), Positives = 34/41 (82%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L+T+S+IS ASFQET RVL A++ G+ID L+GLKENV+ G Sbjct: 1499 LSTRSWISAASFQETTRVLTDASVEGKIDELRGLKENVIIG 1539 Score = 50.8 bits (120), Expect(2) = 2e-16 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 7/84 (8%) Frame = -2 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-------LLR 257 L+ ++Q VY+ QGV I+++H EIIIRQ+ KVR+ + G S FL GE + + R Sbjct: 1418 LLKEVQMVYKLQGVDINDKHFEIIIRQMLKKVRIIDPGDSR-FLVGEEVDKEELEEEIQR 1476 Query: 256 AERAGRALDESIYYRAILLGITRA 185 + G L ++ +L+GITRA Sbjct: 1477 IKLEGGKLPKA---EPVLVGITRA 1497 Score = 32.0 bits (71), Expect = 1.8 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -2 Query: 640 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 548 GD L E ++ DI GLP+VE++FEAR Sbjct: 1250 GDILARIPKETAKVRDIVGGLPRVEELFEAR 1280
>RPOC_COXBU (Q83ET0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 53.1 bits (126), Expect(2) = 2e-16 Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Frame = -2 Query: 415 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 236 +VN++Q+VYR QGV+I+++HIE+I+RQ+ KV++++ G +++ L E + R Sbjct: 1232 IVNEVQEVYRLQGVKINDKHIEVIVRQMLRKVKITQPGDTDL-LQNEQVERTRVREENEK 1290 Query: 235 LDES----IYYRAILLGITRA 185 + + ILLGIT+A Sbjct: 1291 IIKKDGTVAKVEPILLGITKA 1311 Score = 52.0 bits (123), Expect(2) = 2e-16 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = -3 Query: 180 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 58 L T+SFIS ASFQET RVL A++ G+ D L+GLKENV+ G Sbjct: 1313 LATESFISAASFQETTRVLTAASVAGKRDDLRGLKENVIVG 1353 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,023,095 Number of Sequences: 219361 Number of extensions: 1998934 Number of successful extensions: 6119 Number of sequences better than 10.0: 327 Number of HSP's better than 10.0 without gapping: 5328 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6048 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
