Clone Name | rbasd2d20 |
---|---|
Clone Library Name | barley_pub |
>C27AA_BACUH (Q9S597) Pesticidal crystal protein cry27Aa (Insecticidal| delta-endotoxin CryXXVIIA(a)) (Crystaline entomocidal protoxin) (94 kDa crystal protein) Length = 826 Score = 33.9 bits (76), Expect = 0.50 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 5/135 (3%) Frame = -3 Query: 571 MPNNVPNNASTPDYGMFS-DPYLFEQSEQYYDEEL----APYYSDMNGGPQGLRDRSYSQ 407 +P +P N ++ Y + + + Q+ Y++ + P Y + G+ D Y+Q Sbjct: 680 IPVGIPLNQTSEGYNTYDQNTNSYNQNYNNYNQNMDTTYQPNYDNYKQNSSGMYDNPYNQ 739 Query: 406 FDLPSYSNSQFDDMVMGQWPYSRADNSMPNFGADINAYPYQSRDYQATSANAASRYPSYH 227 SY+ + D G Y+ + N N+ + N Y + + S Y +Y+ Sbjct: 740 NPKDSYNQNYTDTYDSG---YNNSQNVGSNYNQEYNTYNQDTENMYNQS------YNNYN 790 Query: 226 PGNGH*ALSEMNNDC 182 N + N+DC Sbjct: 791 SDNNN---YNQNSDC 802
>SEC9_KLULA (Q6CSD1) Protein transport protein SEC9| Length = 556 Score = 33.1 bits (74), Expect = 0.85 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 23/142 (16%) Frame = -3 Query: 580 QFSMPNNVPNNASTPDYGMFSDPYLFEQSEQYYDEELAPYYS--------------DMNG 443 + SM NN +AS G + DPY + + Y + + +PY + N Sbjct: 89 EVSMINNRNASASARHTGNYVDPYSNDNASPYGNSDSSPYGNASASPYDTGYNAPLQQNN 148 Query: 442 GPQGLRDRSYSQFDLPSY-SNSQFDDMVMGQWPYSRADNSMPNFG-------ADINAY-P 290 P G + SYS SY SNS D P + + N+ G A++N+ P Sbjct: 149 NPYGSMNNSYSN---KSYGSNSYSGDTYASPSPQASSSNNNGATGQRPSNPYANMNSQDP 205 Query: 289 YQSRDYQATSANAASRYPSYHP 224 Y + Y +++ + + Y + P Sbjct: 206 YGTNSY--SNSGSVNAYKGFTP 225
>DNAA_STRCO (P27902) Chromosomal replication initiator protein dnaA| Length = 656 Score = 33.1 bits (74), Expect = 0.85 Identities = 35/147 (23%), Positives = 51/147 (34%), Gaps = 11/147 (7%) Frame = -3 Query: 619 SDRRKVLQPGFVRQFSMPN--NVPNNASTPDYGMFS--------DPYLFEQSEQYYDEEL 470 +D+ +P + +++ P + P A DYG DPY E Y E Sbjct: 144 ADQLPTARPAYPQEYQRPEPGSWPRPAQQDDYGWQQQRLGFPERDPYASPNQEPYGQEPP 203 Query: 469 APYYSDMNGGPQGLRDRSYSQFDLPSYSNSQFD-DMVMGQWPYSRADNSMPNFGADINAY 293 PY + Q +D + PSY + D + G++ R D P Y Sbjct: 204 PPYSHENRTSYQ--QDYRPQPPERPSYDAQRGDYEQARGEYEQPRGDYDKPR-----GDY 256 Query: 292 PYQSRDYQATSANAASRYPSYHPGNGH 212 Q DY P PG+GH Sbjct: 257 DQQRGDYD--QRGPRRDLPEPPPGSGH 281
>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1752 Score = 32.3 bits (72), Expect = 1.4 Identities = 37/111 (33%), Positives = 47/111 (42%), Gaps = 7/111 (6%) Frame = -3 Query: 535 DYGMF--SDPYLFEQSEQYYDEELAPYYSDMNGGPQGLRDRSYSQFDLPSYSNSQFDDMV 362 DYG+ + PY QS Y +P+ S M+ G GL SYS P YS S Sbjct: 1521 DYGLLGAASPYKGVQSPGY----TSPFSSAMSPG-YGLTSPSYSPSS-PGYSTSP---AY 1571 Query: 361 MGQWP-YSRADNSM----PNFGADINAYPYQSRDYQATSANAASRYPSYHP 224 M P YS S P++ +Y S Y ATS + + PSY P Sbjct: 1572 MPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSP 1622
>YIIZ_SALTY (P43020) Hypothetical protein yiiZ precursor| Length = 327 Score = 32.0 bits (71), Expect = 1.9 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = -3 Query: 541 TPDYGMFSDPYLFEQSEQYY 482 +P+YG+FS PYLF E+YY Sbjct: 97 SPEYGVFSLPYLFATVEEYY 116
>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type-2| retrotransposable element R2DM (Retrovirus-related Pol polyprotein from type II retrotransposable element R2DM) [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); End Length = 1057 Score = 30.8 bits (68), Expect = 4.2 Identities = 24/90 (26%), Positives = 35/90 (38%) Frame = +1 Query: 154 GLQHRIYYGCNHYSSLKGLNAHSQGDRMDSGLLRSLRSPGNPWTDRGRH*CLPQSLAWSC 333 GL+ +YG H + + + MD LR P T RGRH L C Sbjct: 827 GLREGGHYGPQHGWVSQPTRLLTGKEYMDGIRLRINALPTKSRTTRGRH-----ELERQC 881 Query: 334 RRGCMATGPSPYHQIGCWSMRGDQTVNNSC 423 R GC A + + C+ G + ++C Sbjct: 882 RAGCDAPETTNHIMQKCYRSHGRRVARHNC 911
>S18L1_HUMAN (O75177) SS18-like protein 1 (SYT homolog 1)| Length = 396 Score = 30.8 bits (68), Expect = 4.2 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%) Frame = -3 Query: 493 EQYYDEELAPYYSDMNGGPQGLRDRSYSQFDLPSYS--NSQFDDMVMG--QWPYSRADNS 326 +QYY + Y + + DRS+ + Y NSQ+ G Q + S Sbjct: 269 QQYYPDGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYS 328 Query: 325 MPNFGADINAYPYQSRDYQATSANAASRYPSYHPGNG 215 + + +YP Q + Y ++ A S+YP Y G G Sbjct: 329 QQQYPSQ-QSYPGQQQGY-GSAQGAPSQYPGYQQGQG 363
>CSKI2_HUMAN (Q8WXE0) Caskin-2| Length = 1202 Score = 30.8 bits (68), Expect = 4.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 303 SMPTPISPGITRRPQRTQQAAIHPIT 226 S PTP+ PG +R PQ + HP+T Sbjct: 358 SAPTPLRPGFSRTPQPPAEEPPHPLT 383
>DPOL_ADE05 (P04495) DNA polymerase (EC 2.7.7.7)| Length = 1056 Score = 30.4 bits (67), Expect = 5.5 Identities = 18/68 (26%), Positives = 30/68 (44%) Frame = -3 Query: 433 GLRDRSYSQFDLPSYSNSQFDDMVMGQWPYSRADNSMPNFGADINAYPYQSRDYQATSAN 254 GL D S++ F P+ S++ + Q + + N G D+ A ++ DY S Sbjct: 466 GLTDASFNVFQRPTISSNSH--AIFRQIVFRAEQPARSNLGPDLLAPSHELYDYVRASIR 523 Query: 253 AASRYPSY 230 YP+Y Sbjct: 524 GGRCYPTY 531
>DPOL_ADE02 (P03261) DNA polymerase (EC 2.7.7.7)| Length = 1056 Score = 30.4 bits (67), Expect = 5.5 Identities = 18/68 (26%), Positives = 30/68 (44%) Frame = -3 Query: 433 GLRDRSYSQFDLPSYSNSQFDDMVMGQWPYSRADNSMPNFGADINAYPYQSRDYQATSAN 254 GL D S++ F P+ S++ + Q + + N G D+ A ++ DY S Sbjct: 466 GLTDASFNVFQRPTISSNSH--AIFRQIVFRAEQPARSNLGPDLLAPSHELYDYVRASIR 523 Query: 253 AASRYPSY 230 YP+Y Sbjct: 524 GGRCYPTY 531
>CABP4_BOVIN (Q8HZJ4) Calcium-binding protein 4 (CaBP4)| Length = 279 Score = 30.0 bits (66), Expect = 7.2 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -1 Query: 327 PCQTLGQTSMPTPISPGITRRPQRTQQAAIHPITLGMGIEP 205 P + QT M P +PG ++ P RT++ PI G+ P Sbjct: 56 PSSSGEQTPMQGPEAPGSSKNPSRTREGQEGPIPSASGLAP 96
>SOX18_HUMAN (P35713) Transcription factor SOX-18| Length = 384 Score = 30.0 bits (66), Expect = 7.2 Identities = 15/48 (31%), Positives = 21/48 (43%) Frame = -1 Query: 360 WASGHTAAPTTPCQTLGQTSMPTPISPGITRRPQRTQQAAIHPITLGM 217 WA GH AA T G ++ P +P PQR+ + P G+ Sbjct: 22 WAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRSPEPGRYGL 69
>VP41_NPVOP (O10333) Structural glycoprotein gp41| Length = 367 Score = 30.0 bits (66), Expect = 7.2 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -1 Query: 354 SGHTAAPTTPCQTLGQTSMPTPISPGITRRPQRTQQA 244 SGH APT+ T Q+ PT +S ++R R+ A Sbjct: 14 SGHPFAPTSATLTSSQSGYPTAVSTTLSRADSRSNTA 50
>SYV_RHOPA (Q6N6N1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 957 Score = 29.6 bits (65), Expect = 9.4 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -2 Query: 365 GDGPVAIQPRRQLHAKLWGRHQCLPLSVQGLPGDLSERSKP 243 GD VA+ P + + L G+H LPL + +P E S P Sbjct: 233 GDSAVAVNPEDERYTHLVGKHVILPLVGRRIPIVADEYSDP 273
>IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2)| Length = 1338 Score = 29.6 bits (65), Expect = 9.4 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 6/45 (13%) Frame = -1 Query: 321 QTLGQTSMPTPISPGITRRPQRTQQAAIHPITL------GMGIEP 205 +T T+ TP+SP P+R A++ ++L G+G+ P Sbjct: 1150 ETFSSTTTVTPVSPSFAHNPKRHNSASVENVSLRKSSEGGVGVGP 1194 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,845,251 Number of Sequences: 219361 Number of extensions: 2236741 Number of successful extensions: 5908 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5674 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5903 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7082949625 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)