ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2d20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
2emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306... 105 2e-19
3dbj|AK059486.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 2e-19
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 105 2e-19
5emb|AL731743.2|CNS08C7S Oryza sativa chromosome 12, . BAC OSJNBa... 105 2e-19
6gb|AY596606.1| Saccharum officinarum clone SCEPRZ1008B02, comple... 84 7e-13
7gb|AY105621.1| Zea mays PCO125323 mRNA sequence 74 7e-10
8ref|XM_324003.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.16
9ref|XM_954098.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.16
10emb|AL807371.1|NC5F3 Neurospora crassa DNA linkage group V cosmi... 46 0.16
11ref|NM_191458.1| Oryza sativa (japonica cultivar-group), predic... 44 0.62
12gb|AC137616.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.62
13emb|AL451103.7| Human DNA sequence from clone RP11-172M3 on chro... 44 0.62
14emb|CR376848.7| Zebrafish DNA sequence from clone CH211-197K23 i... 44 0.62
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.62
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.62
17dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.62
18dbj|AK102133.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.62
19ref|XM_774999.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.4
20emb|BX957251.3| Zebrafish DNA sequence from clone CH211-152L15 i... 42 2.4
21dbj|AP002490.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.4
22dbj|AP000719.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.4
23gb|AC151735.3| Mus musculus BAC clone RP23-24D16 from 9, complet... 42 2.4
24gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome ... 42 2.4
25gb|BC066405.1| Danio rerio family with sequence similarity 53, m... 40 9.7
26gb|BC048029.1| Danio rerio family with sequence similarity 53, m... 40 9.7
27ref|NM_001007187.1| Danio rerio family with sequence similarity ... 40 9.7
28gb|AC092244.2| Drosophila melanogaster clone BACR19N22, complete... 40 9.7
29gb|AC111131.8| Mus musculus, clone RP23-340N7, complete sequence 40 9.7
30emb|AL008721.1|HS390C10 Human DNA sequence from clone CTA-390C10... 40 9.7
31emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 40 9.7
32emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 40 9.7
33emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 40 9.7
34gb|AC079943.18| Homo sapiens 3 BAC RP11-290K4 (Roswell Park Canc... 40 9.7
35gb|AC105899.1| Drosophila melanogaster, chromosome 2L, region 22... 40 9.7
36gb|AF338108.1|AF338108 Cowdria ruminantium clone 11hw hypothetic... 40 9.7
37gb|AC018710.4|AC018710 Homo sapiens BAC clone RP11-296L20 from 4... 40 9.7
38gb|AC008320.4|AC008320 Drosophila melanogaster, chromosome 2L, r... 40 9.7
39gb|AC013726.7| Homo sapiens BAC clone RP11-400N9 from 2, complet... 40 9.7
40emb|BX005255.10| Mouse DNA sequence from clone RP23-228N14 on ch... 40 9.7
41gb|AE003584.5| Drosophila melanogaster chromosome 2L, section 7 ... 40 9.7
42gb|AC005749.1|AC005749 Drosophila melanogaster DNA sequence (P1s... 40 9.7
43emb|CT025681.8| Mouse DNA sequence from clone RP24-325P17 on chr... 40 9.7 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  105 bits (53), Expect = 2e-19
 Identities = 134/161 (83%)
 Strand = Plus / Minus

                                                                            
Query: 273      taatccctggactgataggggtaggcattgatgtctgccccaaagtttggcatggagttg 332
                ||||| || |||||||| |||||  |||| || ||||||||||| ||||||| ||||  |
Sbjct: 25111025 taatcacttgactgatatgggtaaccattcatatctgccccaaaatttggcaaggagagg 25110966

                                                                            
Query: 333      tcggcgcggctgtatggccactggcccatcaccatatcatcaaattggctgttggagtat 392
                || |   ||| |||||||||||||  ||||| |||||||||||| |||| ||||||||||
Sbjct: 25110965 tctgtttggccgtatggccactggttcatcatcatatcatcaaactggccgttggagtat 25110906

                                                         
Query: 393      gaggggagatcaaactgtgaataactcctgtccctaagccc 433
                || || |||||||| || ||||||||||| ||||| |||||
Sbjct: 25110905 gaaggcagatcaaaatgcgaataactcctctcccttagccc 25110865



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                          
Query: 113      ggaaggattacaattacactcggctcagaagcaaacagcatg 154
                ||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 25111177 ggaaggattacaattacactcagctcagaagaaaacagcatg 25111136



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 633      agcaagtcattgatgatgtcaangtgcggaaactcatcgcccaccangccttgtggttg 691
                |||||||||||||| ||||| | ||||||||||||||| |  |||| ||||||||||||
Sbjct: 25110656 agcaagtcattgattatgtctaggtgcggaaactcatcactgaccaggccttgtggttg 25110598



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                    
Query: 521      aaacatgccataatcaggtgtgctggcattattggg 556
                |||||||||||||||||||||||||| |||||||||
Sbjct: 25110771 aaacatgccataatcaggtgtgctggaattattggg 25110736
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>emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 121563

 Score =  105 bits (53), Expect = 2e-19
 Identities = 134/161 (83%)
 Strand = Plus / Plus

                                                                         
Query: 273   taatccctggactgataggggtaggcattgatgtctgccccaaagtttggcatggagttg 332
             ||||| || |||||||| |||||  |||| || ||||||||||| ||||||| ||||  |
Sbjct: 20454 taatcacttgactgatatgggtaaccattcatatctgccccaaaatttggcaaggagagg 20513

                                                                         
Query: 333   tcggcgcggctgtatggccactggcccatcaccatatcatcaaattggctgttggagtat 392
             || |   ||| |||||||||||||  ||||| |||||||||||| |||| ||||||||||
Sbjct: 20514 tctgtttggccgtatggccactggttcatcatcatatcatcaaactggccgttggagtat 20573

                                                      
Query: 393   gaggggagatcaaactgtgaataactcctgtccctaagccc 433
             || || |||||||| || ||||||||||| ||||| |||||
Sbjct: 20574 gaaggcagatcaaaatgcgaataactcctctcccttagccc 20614



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                       
Query: 113   ggaaggattacaattacactcggctcagaagcaaacagcatg 154
             ||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 20302 ggaaggattacaattacactcagctcagaagaaaacagcatg 20343



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 633   agcaagtcattgatgatgtcaangtgcggaaactcatcgcccaccangccttgtggttg 691
             |||||||||||||| ||||| | ||||||||||||||| |  |||| ||||||||||||
Sbjct: 20823 agcaagtcattgattatgtctaggtgcggaaactcatcactgaccaggccttgtggttg 20881



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                 
Query: 521   aaacatgccataatcaggtgtgctggcattattggg 556
             |||||||||||||||||||||||||| |||||||||
Sbjct: 20708 aaacatgccataatcaggtgtgctggaattattggg 20743
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>dbj|AK059486.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-G01, full
           insert sequence
          Length = 1062

 Score =  105 bits (53), Expect = 2e-19
 Identities = 134/161 (83%)
 Strand = Plus / Minus

                                                                       
Query: 273 taatccctggactgataggggtaggcattgatgtctgccccaaagtttggcatggagttg 332
           ||||| || |||||||| |||||  |||| || ||||||||||| ||||||| ||||  |
Sbjct: 871 taatcacttgactgatatgggtaaccattcatatctgccccaaaatttggcaaggagagg 812

                                                                       
Query: 333 tcggcgcggctgtatggccactggcccatcaccatatcatcaaattggctgttggagtat 392
           || |   ||| |||||||||||||  ||||| |||||||||||| |||| ||||||||||
Sbjct: 811 tctgtttggccgtatggccactggttcatcatcatatcatcaaactggccgttggagtat 752

                                                    
Query: 393 gaggggagatcaaactgtgaataactcctgtccctaagccc 433
           || || |||||||| || ||||||||||| ||||| |||||
Sbjct: 751 gaaggcagatcaaaatgcgaataactcctctcccttagccc 711



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 113  ggaaggattacaattacactcggctcagaagcaaacagcatg 154
            ||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 1023 ggaaggattacaattacactcagctcagaagaaaacagcatg 982



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 633 agcaagtcattgatgatgtcaangtgcggaaactcatcgcccaccangccttgtggttg 691
           |||||||||||||| ||||| | ||||||||||||||| |  |||| ||||||||||||
Sbjct: 502 agcaagtcattgattatgtctaggtgcggaaactcatcactgaccaggccttgtggttg 444



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 521 aaacatgccataatcaggtgtgctggcattattggg 556
           |||||||||||||||||||||||||| |||||||||
Sbjct: 617 aaacatgccataatcaggtgtgctggaattattggg 582
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  105 bits (53), Expect = 2e-19
 Identities = 134/161 (83%)
 Strand = Plus / Minus

                                                                            
Query: 273      taatccctggactgataggggtaggcattgatgtctgccccaaagtttggcatggagttg 332
                ||||| || |||||||| |||||  |||| || ||||||||||| ||||||| ||||  |
Sbjct: 25039201 taatcacttgactgatatgggtaaccattcatatctgccccaaaatttggcaaggagagg 25039142

                                                                            
Query: 333      tcggcgcggctgtatggccactggcccatcaccatatcatcaaattggctgttggagtat 392
                || |   ||| |||||||||||||  ||||| |||||||||||| |||| ||||||||||
Sbjct: 25039141 tctgtttggccgtatggccactggttcatcatcatatcatcaaactggccgttggagtat 25039082

                                                         
Query: 393      gaggggagatcaaactgtgaataactcctgtccctaagccc 433
                || || |||||||| || ||||||||||| ||||| |||||
Sbjct: 25039081 gaaggcagatcaaaatgcgaataactcctctcccttagccc 25039041



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                          
Query: 113      ggaaggattacaattacactcggctcagaagcaaacagcatg 154
                ||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 25039353 ggaaggattacaattacactcagctcagaagaaaacagcatg 25039312



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 633      agcaagtcattgatgatgtcaangtgcggaaactcatcgcccaccangccttgtggttg 691
                |||||||||||||| ||||| | ||||||||||||||| |  |||| ||||||||||||
Sbjct: 25038832 agcaagtcattgattatgtctaggtgcggaaactcatcactgaccaggccttgtggttg 25038774



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                    
Query: 521      aaacatgccataatcaggtgtgctggcattattggg 556
                |||||||||||||||||||||||||| |||||||||
Sbjct: 25038947 aaacatgccataatcaggtgtgctggaattattggg 25038912
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>emb|AL731743.2|CNS08C7S Oryza sativa chromosome 12, . BAC OSJNBa0001B02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 93872

 Score =  105 bits (53), Expect = 2e-19
 Identities = 134/161 (83%)
 Strand = Plus / Plus

                                                                         
Query: 273   taatccctggactgataggggtaggcattgatgtctgccccaaagtttggcatggagttg 332
             ||||| || |||||||| |||||  |||| || ||||||||||| ||||||| ||||  |
Sbjct: 90038 taatcacttgactgatatgggtaaccattcatatctgccccaaaatttggcaaggagagg 90097

                                                                         
Query: 333   tcggcgcggctgtatggccactggcccatcaccatatcatcaaattggctgttggagtat 392
             || |   ||| |||||||||||||  ||||| |||||||||||| |||| ||||||||||
Sbjct: 90098 tctgtttggccgtatggccactggttcatcatcatatcatcaaactggccgttggagtat 90157

                                                      
Query: 393   gaggggagatcaaactgtgaataactcctgtccctaagccc 433
             || || |||||||| || ||||||||||| ||||| |||||
Sbjct: 90158 gaaggcagatcaaaatgcgaataactcctctcccttagccc 90198



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                       
Query: 113   ggaaggattacaattacactcggctcagaagcaaacagcatg 154
             ||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 89886 ggaaggattacaattacactcagctcagaagaaaacagcatg 89927



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 633   agcaagtcattgatgatgtcaangtgcggaaactcatcgcccaccangccttgtggttg 691
             |||||||||||||| ||||| | ||||||||||||||| |  |||| ||||||||||||
Sbjct: 90407 agcaagtcattgattatgtctaggtgcggaaactcatcactgaccaggccttgtggttg 90465



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                 
Query: 521   aaacatgccataatcaggtgtgctggcattattggg 556
             |||||||||||||||||||||||||| |||||||||
Sbjct: 90292 aaacatgccataatcaggtgtgctggaattattggg 90327
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>gb|AY596606.1| Saccharum officinarum clone SCEPRZ1008B02, complete sequence
          Length = 2482

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 110/132 (83%), Gaps = 3/132 (2%)
 Strand = Plus / Minus

                                                                        
Query: 304  tgtctgccccaaagtttggcatggagttgtcggcgcggctgtatggccactggcccatca 363
            |||||| ||||||  | ||||||||| ||||   |||||||||||||||||| | |||||
Sbjct: 1953 tgtctgacccaaaactaggcatggagatgtcaatgcggctgtatggccactgactcatca 1894

                                                                        
Query: 364  ccatatcatcaaattggctgttg---gagtatgaggggagatcaaactgtgaataactcc 420
             || ||||||||| |||||| ||   |||||||| ||||||||||| |||||||| ||||
Sbjct: 1893 tcagatcatcaaactggctgctgctggagtatgaagggagatcaaagtgtgaatagctcc 1834

                        
Query: 421  tgtccctaagcc 432
             |||||| ||||
Sbjct: 1833 ggtccctcagcc 1822



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 68/77 (88%)
 Strand = Plus / Minus

                                                                        
Query: 472  gctcctcatcatagtattgctccgactgctcaaacaggtacggatcactaaacatgccat 531
            ||||||| ||| |||||||||| ||||| ||||||| ||| || |||| ||||| |||||
Sbjct: 1782 gctcctcgtcaaagtattgctcggactggtcaaacaagtatggctcaccaaacaagccat 1723

                             
Query: 532  aatcaggtgtgctggca 548
            |||||||||||||||||
Sbjct: 1722 aatcaggtgtgctggca 1706



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 119  attacaattacactcggctcagaagcaaacagcatggact 158
            ||||||||||||||| |||||||||| |||||||||||||
Sbjct: 2122 attacaattacactcagctcagaagcgaacagcatggact 2083



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 99/123 (80%)
 Strand = Plus / Minus

                                                                        
Query: 583  gaacaaaccccggttgtagaacctttcttctgtcgctgagctcctcgtccagcaagtcat 642
            ||||||| || ||||| |||||| |||| ||||| ||  | ||||| |||| |||||| |
Sbjct: 1683 gaacaaaaccaggttgaagaacccttctcctgtcactctgatcctcatccaacaagtcgt 1624

                                                                        
Query: 643  tgatgatgtcaangtgcggaaactcatcgcccaccangccttgtggttggtaaggagtga 702
            |||||||||| | ||| || ||||||||  | |||| ||||||||| || || ||||| |
Sbjct: 1623 tgatgatgtctaggtgtgggaactcatcagcgaccaagccttgtggctgatagggagtaa 1564

               
Query: 703  atc 705
            |||
Sbjct: 1563 atc 1561



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 208  ctcaatgcccattcccagggtgataggatggatagcggcttgct 251
            |||||||||||||  ||||| |||| |||||||| | |||||||
Sbjct: 2046 ctcaatgcccattggcagggcgatacgatggatacctgcttgct 2003
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>gb|AY105621.1| Zea mays PCO125323 mRNA sequence
          Length = 697

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 111/135 (82%), Gaps = 3/135 (2%)
 Strand = Plus / Minus

                                                                       
Query: 284 ctgataggggtaggcattgatgtctgccccaaagtttggcatggagttgtcggcgcggct 343
           ||||||||||||| || |  |||||| ||||||  | ||||||||| |||| | ||||||
Sbjct: 233 ctgataggggtagccacttgtgtctgacccaaaactaggcatggagatgtcagtgcggct 174

                                                                       
Query: 344 gtatggccactggcccatcaccatatcatcaaattg---gctgttggagtatgaggggag 400
           |||||||||||| | ||||| || ||||||||| ||   |||| |||||| ||| |||||
Sbjct: 173 gtatggccactgactcatcatcagatcatcaaactggctgctgctggagtgtgatgggag 114

                          
Query: 401 atcaaactgtgaata 415
           |||||| || |||||
Sbjct: 113 atcaaagtgcgaata 99



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 119 attacaattacactcggctcagaagcaaacagcatggact 158
           ||||||||||||||| |||||||||| |||| ||||||||
Sbjct: 373 attacaattacactcagctcagaagcgaacatcatggact 334
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>ref|XM_324003.1| Neurospora crassa OR74A hypothetical protein (NCU04648.1) partial
            mRNA
          Length = 2190

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 631  ccagcaagtcattgatgatgtca 653
            |||||||||||||||||||||||
Sbjct: 1164 ccagcaagtcattgatgatgtca 1186
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>ref|XM_954098.1| Neurospora crassa OR74A hypothetical protein (NCU04648.1) partial
            mRNA
          Length = 2190

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 631  ccagcaagtcattgatgatgtca 653
            |||||||||||||||||||||||
Sbjct: 1164 ccagcaagtcattgatgatgtca 1186
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>emb|AL807371.1|NC5F3 Neurospora crassa DNA linkage group V cosmid contig 5F3
          Length = 83192

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 631   ccagcaagtcattgatgatgtca 653
             |||||||||||||||||||||||
Sbjct: 54654 ccagcaagtcattgatgatgtca 54632
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>ref|NM_191458.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3837

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 624  tcctcgtccagcaagtcattgatgatgtcaangtgcggaaa 664
            ||||| || ||||||||||||||||| |||| ||| |||||
Sbjct: 3428 tcctcctcaagcaagtcattgatgatatcaaggtgtggaaa 3388
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>gb|AC137616.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0069I13, complete sequence
          Length = 94252

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 365   catatcatcaaattggctgttg 386
             ||||||||||||||||||||||
Sbjct: 16600 catatcatcaaattggctgttg 16621
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>emb|AL451103.7| Human DNA sequence from clone RP11-172M3 on chromosome Xp21.1-21.2
              Contains a CpG island, complete sequence
          Length = 175384

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 39     tgaaatatatcaagcaaagaaacata 64
              |||||||||||||||| |||||||||
Sbjct: 103216 tgaaatatatcaagcacagaaacata 103241
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>emb|CR376848.7| Zebrafish DNA sequence from clone CH211-197K23 in linkage group 24,
              complete sequence
          Length = 218909

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 547    cattattgggaacattattggg 568
              ||||||||||||||||||||||
Sbjct: 120275 cattattgggaacattattggg 120296
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 365     catatcatcaaattggctgttg 386
               ||||||||||||||||||||||
Sbjct: 2147371 catatcatcaaattggctgttg 2147392
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 624      tcctcgtccagcaagtcattgatgatgtcaangtgcggaaa 664
                ||||| || ||||||||||||||||| |||| ||| |||||
Sbjct: 32767403 tcctcctcaagcaagtcattgatgatatcaaggtgtggaaa 32767443
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>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0490D09
          Length = 154430

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 624    tcctcgtccagcaagtcattgatgatgtcaangtgcggaaa 664
              ||||| || ||||||||||||||||| |||| ||| |||||
Sbjct: 130198 tcctcctcaagcaagtcattgatgatatcaaggtgtggaaa 130238
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>dbj|AK102133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085E13, full
            insert sequence
          Length = 4086

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 624  tcctcgtccagcaagtcattgatgatgtcaangtgcggaaa 664
            ||||| || ||||||||||||||||| |||| ||| |||||
Sbjct: 3506 tcctcctcaagcaagtcattgatgatatcaaggtgtggaaa 3466
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>ref|XM_774999.1| PREDICTED: Strongylocentrotus purpuratus similar to solute carrier
           family 26, member 11 (LOC574650), mRNA
          Length = 1668

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 304 tgtctgccccaaagtttggca 324
           |||||||||||||||||||||
Sbjct: 526 tgtctgccccaaagtttggca 506
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>emb|BX957251.3| Zebrafish DNA sequence from clone CH211-152L15 in linkage group 23,
             complete sequence
          Length = 120410

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    aaactgactgaaatatatcaa 51
             |||||||||||||||||||||
Sbjct: 35064 aaactgactgaaatatatcaa 35044
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>dbj|AP002490.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-849H4, complete
             sequence
          Length = 191986

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 632   cagcaagtcattgatgatgtc 652
             |||||||||||||||||||||
Sbjct: 13433 cagcaagtcattgatgatgtc 13413
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>dbj|AP000719.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-757C15, complete
             sequences
          Length = 196424

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 632   cagcaagtcattgatgatgtc 652
             |||||||||||||||||||||
Sbjct: 76776 cagcaagtcattgatgatgtc 76756
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>gb|AC151735.3| Mus musculus BAC clone RP23-24D16 from 9, complete sequence
          Length = 201762

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 71   aaggaactgagaagcatttct 91
            |||||||||||||||||||||
Sbjct: 8495 aaggaactgagaagcatttct 8515
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>gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome 9, complete sequence
          Length = 225973

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 71     aaggaactgagaagcatttct 91
              |||||||||||||||||||||
Sbjct: 130704 aaggaactgagaagcatttct 130724
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>gb|BC066405.1| Danio rerio family with sequence similarity 53, member B, mRNA (cDNA
            clone MGC:77156 IMAGE:6961348), complete cds
          Length = 1740

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   aggaactgagaagcatttct 91
            ||||||||||||||||||||
Sbjct: 1315 aggaactgagaagcatttct 1334
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>gb|BC048029.1| Danio rerio family with sequence similarity 53, member B, mRNA (cDNA
            clone MGC:55329 IMAGE:2600918), complete cds
          Length = 1610

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   aggaactgagaagcatttct 91
            ||||||||||||||||||||
Sbjct: 1201 aggaactgagaagcatttct 1220
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>ref|NM_001007187.1| Danio rerio family with sequence similarity 53, member B (fam53b),
            mRNA
          Length = 1740

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   aggaactgagaagcatttct 91
            ||||||||||||||||||||
Sbjct: 1315 aggaactgagaagcatttct 1334
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>gb|AC092244.2| Drosophila melanogaster clone BACR19N22, complete sequence
          Length = 171000

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 543   ctggcattattgggaacatt 562
             ||||||||||||||||||||
Sbjct: 15893 ctggcattattgggaacatt 15874
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>gb|AC111131.8| Mus musculus, clone RP23-340N7, complete sequence
          Length = 202386

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    tcatcaaattggctgttgga 388
              ||||||||||||||||||||
Sbjct: 152741 tcatcaaattggctgttgga 152760
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>emb|AL008721.1|HS390C10 Human DNA sequence from clone CTA-390C10 on chromosome 22q11.21-12.1,
             complete sequence
          Length = 114231

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    aaatatatcaagcaaagaaa 60
             ||||||||||||||||||||
Sbjct: 93512 aaatatatcaagcaaagaaa 93531
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>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 55     aagaaacatagctattaaggaact 78
              ||||||||||||||||||| ||||
Sbjct: 700449 aagaaacatagctattaagcaact 700472
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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 55     aagaaacatagctattaaggaact 78
              ||||||||||||||||||| ||||
Sbjct: 696078 aagaaacatagctattaagcaact 696101
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>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 55     aagaaacatagctattaaggaact 78
              ||||||||||||||||||| ||||
Sbjct: 720602 aagaaacatagctattaagcaact 720625
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>gb|AC079943.18| Homo sapiens 3 BAC RP11-290K4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 139556

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    tcaaactgtgaataactcct 421
              ||||||||||||||||||||
Sbjct: 119530 tcaaactgtgaataactcct 119549
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>gb|AC105899.1| Drosophila melanogaster, chromosome 2L, region 22C-22C, BAC clone
             BACR11F10, complete sequence
          Length = 175115

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 543   ctggcattattgggaacatt 562
             ||||||||||||||||||||
Sbjct: 37563 ctggcattattgggaacatt 37582
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>gb|AF338108.1|AF338108 Cowdria ruminantium clone 11hw hypothetical iron-sulfur cofactor
            synthesis protein 1, hypothetical iron-sulfur cofactor
            synthesis protein 2, and NIFU-like protein genes,
            complete cds
          Length = 4122

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 55   aagaaacatagctattaaggaact 78
            ||||||||||||||||||| ||||
Sbjct: 1061 aagaaacatagctattaagcaact 1084
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>gb|AC018710.4|AC018710 Homo sapiens BAC clone RP11-296L20 from 4, complete sequence
          Length = 197236

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     caaaactgactgaaatatat 48
              ||||||||||||||||||||
Sbjct: 138661 caaaactgactgaaatatat 138680
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>gb|AC008320.4|AC008320 Drosophila melanogaster, chromosome 2L, region 22A-22B, BAC clone
              BACR18A24, complete sequence
          Length = 160551

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 543    ctggcattattgggaacatt 562
              ||||||||||||||||||||
Sbjct: 133682 ctggcattattgggaacatt 133663
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>gb|AC013726.7| Homo sapiens BAC clone RP11-400N9 from 2, complete sequence
          Length = 214647

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    cctggtaatccctggactga 287
              ||||||||||||||||||||
Sbjct: 180543 cctggtaatccctggactga 180562
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>emb|BX005255.10| Mouse DNA sequence from clone RP23-228N14 on chromosome X, complete
              sequence
          Length = 230114

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    tcatcaaattggctgttgga 388
              ||||||||||||||||||||
Sbjct: 136584 tcatcaaattggctgttgga 136603
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>gb|AE003584.5| Drosophila melanogaster chromosome 2L, section 7 of 83 of the complete
             sequence
          Length = 346734

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 543   ctggcattattgggaacatt 562
             ||||||||||||||||||||
Sbjct: 60577 ctggcattattgggaacatt 60558
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>gb|AC005749.1|AC005749 Drosophila melanogaster DNA sequence (P1s DS06378 (D278) and DS03995
             (D277)), complete sequence
          Length = 96288

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 543   ctggcattattgggaacatt 562
             ||||||||||||||||||||
Sbjct: 12355 ctggcattattgggaacatt 12336
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>emb|CT025681.8| Mouse DNA sequence from clone RP24-325P17 on chromosome 14, complete
              sequence
          Length = 205581

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    caaagtttggcatggagttg 332
              ||||||||||||||||||||
Sbjct: 190600 caaagtttggcatggagttg 190581


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,165,864
Number of Sequences: 3902068
Number of extensions: 5165864
Number of successful extensions: 94283
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94051
Number of HSP's gapped (non-prelim): 225
length of query: 705
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 682
effective length of database: 17,143,297,704
effective search space: 11691729034128
effective search space used: 11691729034128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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