ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1o20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1V136_DICDI (Q94480) VEG136 protein (Fragment) 102 7e-22
2YGW1_YEAST (P53088) Hypothetical UPF0021 protein YGL211w 66 8e-11
3Y1157_METJA (Q58558) Hypothetical UPF0021 protein MJ1157 33 0.55
4HMDH1_ARATH (P14891) 3-hydroxy-3-methylglutaryl-coenzyme A reduc... 31 2.7
5RL18_METKA (Q8TZA5) 50S ribosomal protein L18P 30 6.0

>V136_DICDI (Q94480) VEG136 protein (Fragment)|
          Length = 357

 Score =  102 bits (255), Expect = 7e-22
 Identities = 49/90 (54%), Positives = 59/90 (65%)
 Frame = -1

Query: 643 TECIYSPNAYRGFAREFIKDLERMRPRAILDIITSGENFRISTTTRMPEQGTCERCGYIS 464
           TECIY+PNAYRG AR+F+KDLE +RP  I+DII S ENF      +MP Q  C +CGYI 
Sbjct: 235 TECIYAPNAYRGHARDFLKDLEAVRPSIIIDIIHSAENFHFREENKMPVQRNCIQCGYIC 294

Query: 463 SQKLCKACVLLDGLNRGLPKLGIGRTAKVG 374
           S  +C AC LL  LN GL K+ +    K G
Sbjct: 295 SNDICMACDLLKNLNSGLAKVKLSINLKRG 324



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>YGW1_YEAST (P53088) Hypothetical UPF0021 protein YGL211w|
          Length = 317

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
 Frame = -1

Query: 643 TECIYSPNAYRGFAREFIKDLERMRPRAILDIITSGENFRIST--------TTRMPEQGT 488
           TEC Y+P A+RG ARE++K+LE +RP  I+DII SGEN  +            +  +   
Sbjct: 248 TECTYAPEAFRGTAREYMKNLEAVRPSCIIDIIQSGENLALKAKKSNAGKRVVKFVDGNR 307

Query: 487 CERCGYISSQ 458
           C RCGY+SS+
Sbjct: 308 CARCGYLSSK 317



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>Y1157_METJA (Q58558) Hypothetical UPF0021 protein MJ1157|
          Length = 341

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -1

Query: 637 CIYSPNAYRGFAREFIKDLERMRPRAILDIITSGENFRISTTTRMPEQGTCERCGYISSQ 458
           C YS  +YR   ++ I+ LE  +P     I+   E   +       E   CE CG+  S 
Sbjct: 267 CPYSSLSYRHRMKKVIEILEEEKPGVKFSILRGYEKL-LKYLNVKEEIRRCEICGFPCSG 325

Query: 457 KLCKAC 440
            +CK C
Sbjct: 326 NICKVC 331



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>HMDH1_ARATH (P14891) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC|
           1.1.1.34) (HMG-CoA reductase 1) (HMGR1)
          Length = 592

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 21/80 (26%), Positives = 38/80 (47%)
 Frame = -1

Query: 589 KDLERMRPRAILDIITSGENFRISTTTRMPEQGTCERCGYISSQKLCKACVLLDGLNRGL 410
           +++E  +   +++ I  G++  IS T    E GT      ++SQ  C   + + G +   
Sbjct: 476 QNVESSQCITMMEAINDGKDIHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASTES 535

Query: 409 PKLGIGRTAKVGAGADGSGE 350
           P +   R A + AGA  +GE
Sbjct: 536 PGMNARRLATIVAGAVLAGE 555



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>RL18_METKA (Q8TZA5) 50S ribosomal protein L18P|
          Length = 202

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -1

Query: 268 WNGHSACKRDYCGNVPASSLRGQLCRLR 185
           W GH       CGN PA+ L G LC LR
Sbjct: 76  WKGH-------CGNTPAAYLTGYLCGLR 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,283,437
Number of Sequences: 219361
Number of extensions: 1608604
Number of successful extensions: 3892
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3890
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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