Clone Name | rbasd1o20 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | V136_DICDI (Q94480) VEG136 protein (Fragment) | 102 | 7e-22 | 2 | YGW1_YEAST (P53088) Hypothetical UPF0021 protein YGL211w | 66 | 8e-11 | 3 | Y1157_METJA (Q58558) Hypothetical UPF0021 protein MJ1157 | 33 | 0.55 | 4 | HMDH1_ARATH (P14891) 3-hydroxy-3-methylglutaryl-coenzyme A reduc... | 31 | 2.7 | 5 | RL18_METKA (Q8TZA5) 50S ribosomal protein L18P | 30 | 6.0 |
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>V136_DICDI (Q94480) VEG136 protein (Fragment)| Length = 357 Score = 102 bits (255), Expect = 7e-22 Identities = 49/90 (54%), Positives = 59/90 (65%) Frame = -1 Query: 643 TECIYSPNAYRGFAREFIKDLERMRPRAILDIITSGENFRISTTTRMPEQGTCERCGYIS 464 TECIY+PNAYRG AR+F+KDLE +RP I+DII S ENF +MP Q C +CGYI Sbjct: 235 TECIYAPNAYRGHARDFLKDLEAVRPSIIIDIIHSAENFHFREENKMPVQRNCIQCGYIC 294 Query: 463 SQKLCKACVLLDGLNRGLPKLGIGRTAKVG 374 S +C AC LL LN GL K+ + K G Sbjct: 295 SNDICMACDLLKNLNSGLAKVKLSINLKRG 324
>YGW1_YEAST (P53088) Hypothetical UPF0021 protein YGL211w| Length = 317 Score = 66.2 bits (160), Expect = 8e-11 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 8/70 (11%) Frame = -1 Query: 643 TECIYSPNAYRGFAREFIKDLERMRPRAILDIITSGENFRIST--------TTRMPEQGT 488 TEC Y+P A+RG ARE++K+LE +RP I+DII SGEN + + + Sbjct: 248 TECTYAPEAFRGTAREYMKNLEAVRPSCIIDIIQSGENLALKAKKSNAGKRVVKFVDGNR 307 Query: 487 CERCGYISSQ 458 C RCGY+SS+ Sbjct: 308 CARCGYLSSK 317
>Y1157_METJA (Q58558) Hypothetical UPF0021 protein MJ1157| Length = 341 Score = 33.5 bits (75), Expect = 0.55 Identities = 20/66 (30%), Positives = 29/66 (43%) Frame = -1 Query: 637 CIYSPNAYRGFAREFIKDLERMRPRAILDIITSGENFRISTTTRMPEQGTCERCGYISSQ 458 C YS +YR ++ I+ LE +P I+ E + E CE CG+ S Sbjct: 267 CPYSSLSYRHRMKKVIEILEEEKPGVKFSILRGYEKL-LKYLNVKEEIRRCEICGFPCSG 325 Query: 457 KLCKAC 440 +CK C Sbjct: 326 NICKVC 331
>HMDH1_ARATH (P14891) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC| 1.1.1.34) (HMG-CoA reductase 1) (HMGR1) Length = 592 Score = 31.2 bits (69), Expect = 2.7 Identities = 21/80 (26%), Positives = 38/80 (47%) Frame = -1 Query: 589 KDLERMRPRAILDIITSGENFRISTTTRMPEQGTCERCGYISSQKLCKACVLLDGLNRGL 410 +++E + +++ I G++ IS T E GT ++SQ C + + G + Sbjct: 476 QNVESSQCITMMEAINDGKDIHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASTES 535 Query: 409 PKLGIGRTAKVGAGADGSGE 350 P + R A + AGA +GE Sbjct: 536 PGMNARRLATIVAGAVLAGE 555
>RL18_METKA (Q8TZA5) 50S ribosomal protein L18P| Length = 202 Score = 30.0 bits (66), Expect = 6.0 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = -1 Query: 268 WNGHSACKRDYCGNVPASSLRGQLCRLR 185 W GH CGN PA+ L G LC LR Sbjct: 76 WKGH-------CGNTPAAYLTGYLCGLR 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,283,437 Number of Sequences: 219361 Number of extensions: 1608604 Number of successful extensions: 3892 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3775 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3890 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)