ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2d19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYEC_YEAST (P46655) Glutamyl-tRNA synthetase, cytoplasmic (EC 6.... 61 1e-09
2SYEP_MOUSE (Q8CGC7) Bifunctional aminoacyl-tRNA synthetase [Incl... 61 1e-09
3SYEP_HUMAN (P07814) Bifunctional aminoacyl-tRNA synthetase [Incl... 61 2e-09
4SYEP_DROME (P28668) Bifunctional aminoacyl-tRNA synthetase [Incl... 61 2e-09
5SYEC_SCHPO (O13775) Probable glutamyl-tRNA synthetase, cytoplasm... 57 2e-08
6SYQ_RALSO (Q8Y199) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 38 0.011
7SYQ_SALTY (Q8ZQX5) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 35 0.12
8SYQ_SALTI (Q8Z8F8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 35 0.12
9SYQ_ECOLI (P00962) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 34 0.16
10SYQ_ECOL6 (Q8FJW4) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 34 0.16
11SYQ_ECO57 (Q8X9H8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 34 0.16
12SYQ_SHIFL (Q83LY4) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 34 0.16
13SYQ_PSEPK (Q88IU5) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 34 0.21
14SYQ_PSESM (Q87YQ1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 33 0.27
15SYQ_RHOBA (Q7UX42) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 32 0.61
16SYQ_PSEAE (Q9I2U8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 32 0.61
17SYQ_NITEU (Q81ZS7) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 32 0.79
18PKHG1_HUMAN (Q9ULL1) Pleckstrin homology domain-containing famil... 29 5.1
19NALP7_HUMAN (Q8WX94) NACHT-, LRR- and PYD-containing protein 7 (... 29 5.1
20PUR1_DROME (Q27601) Amidophosphoribosyltransferase precursor (EC... 29 6.7
21SYQ_CLOPE (Q8XMP3) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 29 6.7
22HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6) 29 6.7
23SYQ_XANCP (Q8PCB3) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 29 6.7
24SYE_SULAC (Q4J8P2) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 29 6.7
25TRPV5_MOUSE (P69744) Transient receptor potential cation channel... 29 6.7
26SYE_PYRFU (Q8U064) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 29 6.7
27CTF1B_FUSSO (P52959) Cutinase transcription factor 1 beta 29 6.7

>SYEC_YEAST (P46655) Glutamyl-tRNA synthetase, cytoplasmic (EC 6.1.1.17)|
           (Glutamate--tRNA ligase) (GluRS) (P85)
          Length = 724

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 31/65 (47%), Positives = 41/65 (63%)
 Frame = -2

Query: 461 EEDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPIMPFA 282
           EEDE F D L P T     A+ D N++++K G++IQ ERKGYYR D    +  KP + F 
Sbjct: 652 EEDESFEDFLTPQTEFHTDAIADLNVKDMKIGDIIQFERKGYYRLDA-LPKDGKPYVFFT 710

Query: 281 IPDGR 267
           IPDG+
Sbjct: 711 IPDGK 715



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>SYEP_MOUSE (Q8CGC7) Bifunctional aminoacyl-tRNA synthetase [Includes:|
           Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA
           ligase); Prolyl-tRNA synthetase (EC 6.1.1.15)
           (Proline--tRNA ligase)]
          Length = 1512

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 10/76 (13%)
 Frame = -2

Query: 458 EDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPIMPFA- 282
           +DEDF   +N  ++ E L LGDP ++++KKG++IQL+R+G++ CD P+    +P+ P++ 
Sbjct: 637 KDEDFKQYINKDSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPY----EPVSPYSC 692

Query: 281 ---------IPDGRQK 261
                    IPDG  K
Sbjct: 693 REAPCILIYIPDGHTK 708



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>SYEP_HUMAN (P07814) Bifunctional aminoacyl-tRNA synthetase [Includes:|
           Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA
           ligase); Prolyl-tRNA synthetase (EC 6.1.1.15)
           (Proline--tRNA ligase)]
          Length = 1440

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 10/76 (13%)
 Frame = -2

Query: 458 EDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPIMPFA- 282
           +DEDF   +N  ++ E L LGDP ++++KKG++IQL+R+G++ CD P+    +P+ P++ 
Sbjct: 565 KDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPY----EPVSPYSC 620

Query: 281 ---------IPDGRQK 261
                    IPDG  K
Sbjct: 621 KEAPCVLIYIPDGHTK 636



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>SYEP_DROME (P28668) Bifunctional aminoacyl-tRNA synthetase [Includes:|
           Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA
           ligase); Prolyl-tRNA synthetase (EC 6.1.1.15)
           (Proline--tRNA ligase)]
          Length = 1714

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
 Frame = -2

Query: 458 EDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSS------KP 297
           +DEDF   +   TR E   LGDP ++  KKG++IQL+R+G+++ DV +   S       P
Sbjct: 644 KDEDFKQFIGHKTRDEVPMLGDPELKKCKKGDIIQLQRRGFFKVDVAYAPPSGYTNVPSP 703

Query: 296 IMPFAIPDGRQK 261
           I+ F+IPDG  K
Sbjct: 704 IVLFSIPDGHTK 715



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>SYEC_SCHPO (O13775) Probable glutamyl-tRNA synthetase, cytoplasmic (EC|
           6.1.1.17) (Glutamate--tRNA ligase) (GluRS)
          Length = 716

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 29/65 (44%), Positives = 40/65 (61%)
 Frame = -2

Query: 461 EEDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPIMPFA 282
           EE E++ D L P T   +    D  ++N+KKG++IQ+ERKGYY  DVPF       + F 
Sbjct: 645 EEGENYKDFLTPQTEFHSPVFADVGIKNLKKGDIIQVERKGYYIVDVPF--DGTQAVLFN 702

Query: 281 IPDGR 267
           IPDG+
Sbjct: 703 IPDGK 707



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>SYQ_RALSO (Q8Y199) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 580

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -2

Query: 455 DEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294
           D++FLD LNP  +R   A  +P +   K  +  Q ER GY+  D    +  KP+
Sbjct: 514 DKNFLDALNPDAKRVVTAYLEPTLATAKPEDRFQFERHGYFVADRIDSQPGKPV 567



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>SYQ_SALTY (Q8ZQX5) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 554

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 452 EDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSK 300
           EDFL  +NP +       G+P+++    G+  Q ER+GY+  D  +  + K
Sbjct: 486 EDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFEREGYFCLDSRYATADK 536



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>SYQ_SALTI (Q8Z8F8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 554

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 452 EDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSK 300
           EDFL  +NP +       G+P+++    G+  Q ER+GY+  D  +  + K
Sbjct: 486 EDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFEREGYFCLDSRYATADK 536



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>SYQ_ECOLI (P00962) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 553

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 452 EDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294
           +DFL  +NP +        +P++++   G+  Q ER+GY+  D     + KP+
Sbjct: 485 DDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV 537



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>SYQ_ECOL6 (Q8FJW4) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 553

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 452 EDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294
           +DFL  +NP +        +P++++   G+  Q ER+GY+  D     + KP+
Sbjct: 485 DDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV 537



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>SYQ_ECO57 (Q8X9H8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 553

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 452 EDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294
           +DFL  +NP +        +P++++   G+  Q ER+GY+  D     + KP+
Sbjct: 485 DDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV 537



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>SYQ_SHIFL (Q83LY4) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 554

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 452 EDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294
           +DFL  +NP +        +P++++   G+  Q ER+GY+  D     + KP+
Sbjct: 486 DDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV 538



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>SYQ_PSEPK (Q88IU5) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 567

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 461 EEDEDFLDNLNPCTRREALAL-GDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294
           EE   FLDN+NP + +       +P++   +  +  Q ER+GY+  D+   +  +P+
Sbjct: 498 EEGGSFLDNINPASLQVLSGCRAEPSLAQAQPEDRFQFEREGYFCADLKDSQPGRPV 554



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>SYQ_PSESM (Q87YQ1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 569

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 461 EEDEDFLDNLNPCTRREALAL-GDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPIMP 288
           E+   FLDN+NP + +       +P++ + +  +  Q ER+GY+  D   ++ SKP  P
Sbjct: 501 EDGASFLDNINPDSLQVLTGCRAEPSLGHAQPEDRFQFEREGYFCAD---IKDSKPGQP 556



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>SYQ_RHOBA (Q7UX42) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 601

 Score = 32.3 bits (72), Expect = 0.61
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 446 FLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCD 324
           FLD+LNP +     A  +P +     G+ +Q ER GYY  D
Sbjct: 532 FLDHLNPDSLTTLTAHVEPALAEAAVGDRVQFERLGYYVVD 572



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>SYQ_PSEAE (Q9I2U8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 556

 Score = 32.3 bits (72), Expect = 0.61
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 461 EEDEDFLDNLNPCTRRE-ALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294
           EE   FLDN+N  + +  A    +P++      +  Q ER+GY+  D+   R  KP+
Sbjct: 486 EEGGSFLDNINADSLQVLAGCRAEPSLGQANPEDRFQFEREGYFVADLKDSRPGKPV 542



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>SYQ_NITEU (Q81ZS7) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 556

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -2

Query: 458 EDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294
           E +DF  +LNP ++       +P++   +  +  Q ER GY+  D+      KPI
Sbjct: 489 EGKDFKISLNPNSKEVITGYVEPSLCEAQPEQRFQFERHGYFVADLADTGPGKPI 543



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>PKHG1_HUMAN (Q9ULL1) Pleckstrin homology domain-containing family G member 1|
          Length = 1385

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +2

Query: 26   IHSPGSSWHIHSNMQKEYII*Y*LTESKTLKYQYPKFQVSVITTPV*YQ*GCNI 187
            +H     W +HS      +  + L   + L+ +YP F+++  +TP      C++
Sbjct: 1076 VHHGSGDWLLHSTYSNGELADFCLPPEQDLRSRYPTFEINTKSTPRQLSAACSV 1129



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>NALP7_HUMAN (Q8WX94) NACHT-, LRR- and PYD-containing protein 7|
           (PYRIN-containing APAF1-like protein 3)
          Length = 980

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 260 TSAGHLEWQKA*LVWTTGQMEHHTCNILSFR 352
           T AGH+EW++  ++     + +H CN+   R
Sbjct: 737 TLAGHIEWERTMMLMLCDLLRNHKCNLQYLR 767



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>PUR1_DROME (Q27601) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)|
           (Glutamine phosphoribosylpyrophosphate amidotransferase)
           (ATASE) (GPAT)
          Length = 546

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 407 LALGDPNMRNVKKGEVIQLERKGYYRCDV 321
           L++G   +R V+ GE+++L R GY   D+
Sbjct: 281 LSIGARYVREVEPGEIVELSRSGYRTVDI 309



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>SYQ_CLOPE (Q8XMP3) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 552

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 458 EDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPF 315
           E + FL+ +NP +        +P+ ++ K  +  QL R GY+  D  F
Sbjct: 484 EGKHFLEQINPNSLTICKGFIEPSAKDAKPQDKYQLFRHGYFNVDPNF 531



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>HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6)|
          Length = 5635

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
 Frame = -2

Query: 407  LALGDPNMRNVKKGEVIQLER-----KGYYRCDV 321
            L LGDPN+  + +G+V+ L+      KG Y+C V
Sbjct: 1494 LFLGDPNVELLDRGQVLHLKNARRNDKGRYQCTV 1527



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>SYQ_XANCP (Q8PCB3) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 579

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 458 EDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCD 324
           E + + D LNP ++R      +P+       +  Q ER GY+  D
Sbjct: 512 EGKTYRDYLNPESKRSVRGYVEPSAAQAAPEQAFQFERTGYFVAD 556



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>SYE_SULAC (Q4J8P2) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 567

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 401 LGDPNMRNVKKGEVIQLERKGYYRCD 324
           +G+  +RN+ KGE++Q  R G+ + D
Sbjct: 527 VGESEIRNLNKGEIVQFIRYGFVKVD 552



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>TRPV5_MOUSE (P69744) Transient receptor potential cation channel subfamily V|
           member 5 (TrpV5) (osm-9-like TRP channel 3) (OTRPC3)
           (Epithelial calcium channel 1) (ECaC1) (Calcium
           transport protein 2) (CaT2)
          Length = 723

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 304 PNQLCLLPFQMAGRSPRRLLLEHSLHKRRRL 212
           PN   L PF++AG     ++ +H + KR+R+
Sbjct: 229 PNNQGLTPFKLAGVEGNTVMFQHLMQKRKRI 259



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>SYE_PYRFU (Q8U064) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 572

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 380 NVKKGEVIQLERKGYYRCD 324
           NVK+GE++Q ER G+ R D
Sbjct: 540 NVKEGEIVQFERFGFVRID 558



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>CTF1B_FUSSO (P52959) Cutinase transcription factor 1 beta|
          Length = 882

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 204 VLLWALMLQPYWYQTGVVMTETWNF 130
           VL+ AL+L  YWY+T     +TW++
Sbjct: 344 VLVQALLLMTYWYETPDDQKDTWHW 368


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,757,789
Number of Sequences: 219361
Number of extensions: 1512112
Number of successful extensions: 3723
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3720
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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