ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2d19 |
|---|---|
| Clone Library Name | barley_pub |
>SYEC_YEAST (P46655) Glutamyl-tRNA synthetase, cytoplasmic (EC 6.1.1.17)| (Glutamate--tRNA ligase) (GluRS) (P85) Length = 724 Score = 61.2 bits (147), Expect = 1e-09 Identities = 31/65 (47%), Positives = 41/65 (63%) Frame = -2 Query: 461 EEDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPIMPFA 282 EEDE F D L P T A+ D N++++K G++IQ ERKGYYR D + KP + F Sbjct: 652 EEDESFEDFLTPQTEFHTDAIADLNVKDMKIGDIIQFERKGYYRLDA-LPKDGKPYVFFT 710 Query: 281 IPDGR 267 IPDG+ Sbjct: 711 IPDGK 715
>SYEP_MOUSE (Q8CGC7) Bifunctional aminoacyl-tRNA synthetase [Includes:| Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase)] Length = 1512 Score = 61.2 bits (147), Expect = 1e-09 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 10/76 (13%) Frame = -2 Query: 458 EDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPIMPFA- 282 +DEDF +N ++ E L LGDP ++++KKG++IQL+R+G++ CD P+ +P+ P++ Sbjct: 637 KDEDFKQYINKDSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPY----EPVSPYSC 692 Query: 281 ---------IPDGRQK 261 IPDG K Sbjct: 693 REAPCILIYIPDGHTK 708
>SYEP_HUMAN (P07814) Bifunctional aminoacyl-tRNA synthetase [Includes:| Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase)] Length = 1440 Score = 60.8 bits (146), Expect = 2e-09 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 10/76 (13%) Frame = -2 Query: 458 EDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPIMPFA- 282 +DEDF +N ++ E L LGDP ++++KKG++IQL+R+G++ CD P+ +P+ P++ Sbjct: 565 KDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPY----EPVSPYSC 620 Query: 281 ---------IPDGRQK 261 IPDG K Sbjct: 621 KEAPCVLIYIPDGHTK 636
>SYEP_DROME (P28668) Bifunctional aminoacyl-tRNA synthetase [Includes:| Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase)] Length = 1714 Score = 60.8 bits (146), Expect = 2e-09 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Frame = -2 Query: 458 EDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSS------KP 297 +DEDF + TR E LGDP ++ KKG++IQL+R+G+++ DV + S P Sbjct: 644 KDEDFKQFIGHKTRDEVPMLGDPELKKCKKGDIIQLQRRGFFKVDVAYAPPSGYTNVPSP 703 Query: 296 IMPFAIPDGRQK 261 I+ F+IPDG K Sbjct: 704 IVLFSIPDGHTK 715
>SYEC_SCHPO (O13775) Probable glutamyl-tRNA synthetase, cytoplasmic (EC| 6.1.1.17) (Glutamate--tRNA ligase) (GluRS) Length = 716 Score = 57.4 bits (137), Expect = 2e-08 Identities = 29/65 (44%), Positives = 40/65 (61%) Frame = -2 Query: 461 EEDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPIMPFA 282 EE E++ D L P T + D ++N+KKG++IQ+ERKGYY DVPF + F Sbjct: 645 EEGENYKDFLTPQTEFHSPVFADVGIKNLKKGDIIQVERKGYYIVDVPF--DGTQAVLFN 702 Query: 281 IPDGR 267 IPDG+ Sbjct: 703 IPDGK 707
>SYQ_RALSO (Q8Y199) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 38.1 bits (87), Expect = 0.011 Identities = 19/54 (35%), Positives = 28/54 (51%) Frame = -2 Query: 455 DEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294 D++FLD LNP +R A +P + K + Q ER GY+ D + KP+ Sbjct: 514 DKNFLDALNPDAKRVVTAYLEPTLATAKPEDRFQFERHGYFVADRIDSQPGKPV 567
>SYQ_SALTY (Q8ZQX5) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 554 Score = 34.7 bits (78), Expect = 0.12 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = -2 Query: 452 EDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSK 300 EDFL +NP + G+P+++ G+ Q ER+GY+ D + + K Sbjct: 486 EDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFEREGYFCLDSRYATADK 536
>SYQ_SALTI (Q8Z8F8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 554 Score = 34.7 bits (78), Expect = 0.12 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = -2 Query: 452 EDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSK 300 EDFL +NP + G+P+++ G+ Q ER+GY+ D + + K Sbjct: 486 EDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFEREGYFCLDSRYATADK 536
>SYQ_ECOLI (P00962) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 553 Score = 34.3 bits (77), Expect = 0.16 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = -2 Query: 452 EDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294 +DFL +NP + +P++++ G+ Q ER+GY+ D + KP+ Sbjct: 485 DDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV 537
>SYQ_ECOL6 (Q8FJW4) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 553 Score = 34.3 bits (77), Expect = 0.16 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = -2 Query: 452 EDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294 +DFL +NP + +P++++ G+ Q ER+GY+ D + KP+ Sbjct: 485 DDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV 537
>SYQ_ECO57 (Q8X9H8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 553 Score = 34.3 bits (77), Expect = 0.16 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = -2 Query: 452 EDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294 +DFL +NP + +P++++ G+ Q ER+GY+ D + KP+ Sbjct: 485 DDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV 537
>SYQ_SHIFL (Q83LY4) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 554 Score = 34.3 bits (77), Expect = 0.16 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = -2 Query: 452 EDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294 +DFL +NP + +P++++ G+ Q ER+GY+ D + KP+ Sbjct: 486 DDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV 538
>SYQ_PSEPK (Q88IU5) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 567 Score = 33.9 bits (76), Expect = 0.21 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -2 Query: 461 EEDEDFLDNLNPCTRREALAL-GDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294 EE FLDN+NP + + +P++ + + Q ER+GY+ D+ + +P+ Sbjct: 498 EEGGSFLDNINPASLQVLSGCRAEPSLAQAQPEDRFQFEREGYFCADLKDSQPGRPV 554
>SYQ_PSESM (Q87YQ1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 569 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = -2 Query: 461 EEDEDFLDNLNPCTRREALAL-GDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPIMP 288 E+ FLDN+NP + + +P++ + + + Q ER+GY+ D ++ SKP P Sbjct: 501 EDGASFLDNINPDSLQVLTGCRAEPSLGHAQPEDRFQFEREGYFCAD---IKDSKPGQP 556
>SYQ_RHOBA (Q7UX42) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 601 Score = 32.3 bits (72), Expect = 0.61 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -2 Query: 446 FLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCD 324 FLD+LNP + A +P + G+ +Q ER GYY D Sbjct: 532 FLDHLNPDSLTTLTAHVEPALAEAAVGDRVQFERLGYYVVD 572
>SYQ_PSEAE (Q9I2U8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 556 Score = 32.3 bits (72), Expect = 0.61 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -2 Query: 461 EEDEDFLDNLNPCTRRE-ALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294 EE FLDN+N + + A +P++ + Q ER+GY+ D+ R KP+ Sbjct: 486 EEGGSFLDNINADSLQVLAGCRAEPSLGQANPEDRFQFEREGYFVADLKDSRPGKPV 542
>SYQ_NITEU (Q81ZS7) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 556 Score = 32.0 bits (71), Expect = 0.79 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -2 Query: 458 EDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPFVRSSKPI 294 E +DF +LNP ++ +P++ + + Q ER GY+ D+ KPI Sbjct: 489 EGKDFKISLNPNSKEVITGYVEPSLCEAQPEQRFQFERHGYFVADLADTGPGKPI 543
>PKHG1_HUMAN (Q9ULL1) Pleckstrin homology domain-containing family G member 1| Length = 1385 Score = 29.3 bits (64), Expect = 5.1 Identities = 12/54 (22%), Positives = 25/54 (46%) Frame = +2 Query: 26 IHSPGSSWHIHSNMQKEYII*Y*LTESKTLKYQYPKFQVSVITTPV*YQ*GCNI 187 +H W +HS + + L + L+ +YP F+++ +TP C++ Sbjct: 1076 VHHGSGDWLLHSTYSNGELADFCLPPEQDLRSRYPTFEINTKSTPRQLSAACSV 1129
>NALP7_HUMAN (Q8WX94) NACHT-, LRR- and PYD-containing protein 7| (PYRIN-containing APAF1-like protein 3) Length = 980 Score = 29.3 bits (64), Expect = 5.1 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = +2 Query: 260 TSAGHLEWQKA*LVWTTGQMEHHTCNILSFR 352 T AGH+EW++ ++ + +H CN+ R Sbjct: 737 TLAGHIEWERTMMLMLCDLLRNHKCNLQYLR 767
>PUR1_DROME (Q27601) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)| (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT) Length = 546 Score = 28.9 bits (63), Expect = 6.7 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -2 Query: 407 LALGDPNMRNVKKGEVIQLERKGYYRCDV 321 L++G +R V+ GE+++L R GY D+ Sbjct: 281 LSIGARYVREVEPGEIVELSRSGYRTVDI 309
>SYQ_CLOPE (Q8XMP3) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 552 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -2 Query: 458 EDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCDVPF 315 E + FL+ +NP + +P+ ++ K + QL R GY+ D F Sbjct: 484 EGKHFLEQINPNSLTICKGFIEPSAKDAKPQDKYQLFRHGYFNVDPNF 531
>HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6)| Length = 5635 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 5/34 (14%) Frame = -2 Query: 407 LALGDPNMRNVKKGEVIQLER-----KGYYRCDV 321 L LGDPN+ + +G+V+ L+ KG Y+C V Sbjct: 1494 LFLGDPNVELLDRGQVLHLKNARRNDKGRYQCTV 1527
>SYQ_XANCP (Q8PCB3) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 579 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = -2 Query: 458 EDEDFLDNLNPCTRREALALGDPNMRNVKKGEVIQLERKGYYRCD 324 E + + D LNP ++R +P+ + Q ER GY+ D Sbjct: 512 EGKTYRDYLNPESKRSVRGYVEPSAAQAAPEQAFQFERTGYFVAD 556
>SYE_SULAC (Q4J8P2) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 567 Score = 28.9 bits (63), Expect = 6.7 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -2 Query: 401 LGDPNMRNVKKGEVIQLERKGYYRCD 324 +G+ +RN+ KGE++Q R G+ + D Sbjct: 527 VGESEIRNLNKGEIVQFIRYGFVKVD 552
>TRPV5_MOUSE (P69744) Transient receptor potential cation channel subfamily V| member 5 (TrpV5) (osm-9-like TRP channel 3) (OTRPC3) (Epithelial calcium channel 1) (ECaC1) (Calcium transport protein 2) (CaT2) Length = 723 Score = 28.9 bits (63), Expect = 6.7 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = -3 Query: 304 PNQLCLLPFQMAGRSPRRLLLEHSLHKRRRL 212 PN L PF++AG ++ +H + KR+R+ Sbjct: 229 PNNQGLTPFKLAGVEGNTVMFQHLMQKRKRI 259
>SYE_PYRFU (Q8U064) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 572 Score = 28.9 bits (63), Expect = 6.7 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -2 Query: 380 NVKKGEVIQLERKGYYRCD 324 NVK+GE++Q ER G+ R D Sbjct: 540 NVKEGEIVQFERFGFVRID 558
>CTF1B_FUSSO (P52959) Cutinase transcription factor 1 beta| Length = 882 Score = 28.9 bits (63), Expect = 6.7 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -1 Query: 204 VLLWALMLQPYWYQTGVVMTETWNF 130 VL+ AL+L YWY+T +TW++ Sbjct: 344 VLVQALLLMTYWYETPDDQKDTWHW 368 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,757,789 Number of Sequences: 219361 Number of extensions: 1512112 Number of successful extensions: 3723 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3650 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3720 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
