ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1o18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_627368.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_4840), partial mRNA Length = 7230 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 135 gaagttgaagttgtagctgttgat 158 |||||||||||||||||||||||| Sbjct: 6802 gaagttgaagttgtagctgttgat 6779
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 379 gagatgctgatctgcgcgccgaggccgagct 409 ||||||| ||||| ||||||||||||||||| Sbjct: 2804480 gagatgccgatctccgcgccgaggccgagct 2804510
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 379 gagatgctgatctgcgcgccgaggccgagct 409 ||||||| ||||| ||||||||||||||||| Sbjct: 2827302 gagatgccgatctccgcgccgaggccgagct 2827332
>ref|XM_493895.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 513 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 541 gccgccgtggtggccatggtga 562 |||||||||||||||||||||| Sbjct: 387 gccgccgtggtggccatggtga 366
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 541 gccgccgtggtggccatggtga 562 |||||||||||||||||||||| Sbjct: 937554 gccgccgtggtggccatggtga 937575
>dbj|AK067943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122C02, full insert sequence Length = 865 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 541 gccgccgtggtggccatggtga 562 |||||||||||||||||||||| Sbjct: 452 gccgccgtggtggccatggtga 431
>dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0699E04 Length = 175439 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 541 gccgccgtggtggccatggtga 562 |||||||||||||||||||||| Sbjct: 27951 gccgccgtggtggccatggtga 27972
>ref|NM_120061.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds AT4G39010 mRNA, complete cds Length = 1835 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 531 gtcgttgacggccgccgtggtggccatggtgag 563 |||| |||||||||||||||||| |||||||| Sbjct: 70 gtcggtgacggccgccgtggtggtgatggtgag 38
>gb|DQ490515.1| Emericella nidulans alpha-galactosidase (AN8138-2) mRNA, complete cds Length = 2253 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 517 ttctcggcggaggtgtcgttgacgg 541 ||||| ||||||||||||||||||| Sbjct: 1313 ttctcagcggaggtgtcgttgacgg 1289
>ref|XM_676315.1| Aspergillus nidulans FGSC A4 alpha-galactosidase C precursor (AN8138.2), mRNA Length = 2253 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 517 ttctcggcggaggtgtcgttgacgg 541 ||||| ||||||||||||||||||| Sbjct: 1313 ttctcagcggaggtgtcgttgacgg 1289
>emb|CT009641.2| Pan troglodytes chromosome X BAC PTB-007I17, complete sequence Length = 68055 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 549 ggtggccatggtgagcacggtggtg 573 ||||| ||||||||||||||||||| Sbjct: 15338 ggtggtcatggtgagcacggtggtg 15362
>emb|CR683301.2|CNS0FQ6P Tetraodon nigroviridis full-length cDNA Length = 815 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tcaccttcttctccatggtct 346 ||||||||||||||||||||| Sbjct: 160 tcaccttcttctccatggtct 140
>ref|XM_660787.1| Cryptosporidium hominis TU502 Myb-like DNA-binding domain (Chro.80556) partial mRNA Length = 5922 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 gaagttgaagttgtagctgttgatg 159 |||| |||||||||||||||||||| Sbjct: 5524 gaagctgaagttgtagctgttgatg 5500
>emb|CR648095.2|CNS0EZ1H Tetraodon nigroviridis full-length cDNA Length = 1458 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tcaccttcttctccatggtct 346 ||||||||||||||||||||| Sbjct: 852 tcaccttcttctccatggtct 832
>emb|CR639300.2|CNS0ES96 Tetraodon nigroviridis full-length cDNA Length = 1478 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tcaccttcttctccatggtct 346 ||||||||||||||||||||| Sbjct: 861 tcaccttcttctccatggtct 841
>emb|CR962120.1|PTB065B04 Pan troglodytes chromosome X BAC PTB-065B04, complete sequence Length = 35005 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 attgatgataattaagataaa 80 ||||||||||||||||||||| Sbjct: 24109 attgatgataattaagataaa 24129
>emb|Z93848.1|HSU35G3 Human DNA sequence from clone LL0XNC01-35G3 on chromosome X Contains the 5' end of a gene for the possible ortholog of mouse glycine receptor alpha 4 subunit (GLRA4), complete sequence Length = 39796 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 549 ggtggccatggtgagcacggtggtg 573 ||||| ||||||||||||||||||| Sbjct: 833 ggtggtcatggtgagcacggtggtg 857
>emb|AL589794.7| Human DNA sequence from clone RP11-564C4 on chromosome 10 Contains the 3' end of the gene for apobec-1 complementation factor (ACF) (ASP), the gene for a novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), the cathepsin L-like 2 (CTSLL2) pseudogene, three novel pseudogenes (KIAA1553), a novel gene, a protein geranylgeranyltransferase type I beta subunit (PGGT1B) pseudogene and a CpG island, complete sequence Length = 178899 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 caccttcttctccatggtctg 347 ||||||||||||||||||||| Sbjct: 47031 caccttcttctccatggtctg 47051
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 gatgataattaagataaagcg 83 ||||||||||||||||||||| Sbjct: 319934 gatgataattaagataaagcg 319914
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90 Length = 198987 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 531 gtcgttgacggccgccgtggtggccatggtgag 563 |||| |||||||||||||||||| |||||||| Sbjct: 93269 gtcggtgacggccgccgtggtggtgatggtgag 93301
>emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, BAC clone F19H22 (ESSA project) Length = 100469 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 531 gtcgttgacggccgccgtggtggccatggtgag 563 |||| |||||||||||||||||| |||||||| Sbjct: 55259 gtcggtgacggccgccgtggtggtgatggtgag 55291
>gb|AC023702.4| Drosophila melanogaster X BAC RP98-24L2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 159970 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 agtgtcgaagttgaagttgtagctg 153 ||||||||||||||||||| ||||| Sbjct: 118453 agtgtcgaagttgaagttgaagctg 118429
>gb|AY059825.1| Arabidopsis thaliana putative endo-1, 4-beta-glucanase (At4g39010; F19H22.110) mRNA, complete cds Length = 1836 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 531 gtcgttgacggccgccgtggtggccatggtgag 563 |||| |||||||||||||||||| |||||||| Sbjct: 70 gtcggtgacggccgccgtggtggtgatggtgag 38
>emb|BX826717.1|CNS0A45J Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB57ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1760 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 531 gtcgttgacggccgccgtggtggccatggtgag 563 |||| |||||||||||||||||| |||||||| Sbjct: 48 gtcggtgacggccgccgtggtggtgatggtgag 16
>gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184175 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 agtgtcgaagttgaagttgtagctg 153 ||||||||||||||||||| ||||| Sbjct: 59958 agtgtcgaagttgaagttgaagctg 59934
>gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 of 74 of the complete sequence Length = 318665 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 agtgtcgaagttgaagttgtagctg 153 ||||||||||||||||||| ||||| Sbjct: 86847 agtgtcgaagttgaagttgaagctg 86823
>emb|AL732498.15| Mouse DNA sequence from clone RP23-323E6 on chromosome 4, complete sequence Length = 145881 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 gcctgagcctcttggtgttct 520 ||||||||||||||||||||| Sbjct: 100936 gcctgagcctcttggtgttct 100956
>ref|XM_420183.1| PREDICTED: Gallus gallus similar to Alpha-galactosidase A precursor (Melibiase) (Alpha-D-galactoside galactohydrolase) (Alpha-D-galactosidase A) (Agalsidase alfa) (LOC422188), mRNA Length = 3972 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 550 gtggccatggtgagcacggtggtg 573 |||| ||||||||||||||||||| Sbjct: 1490 gtggtcatggtgagcacggtggtg 1467
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 cgcgccgaggccgagcttgg 412 |||||||||||||||||||| Sbjct: 1377067 cgcgccgaggccgagcttgg 1377048
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gatctgcgcgccgaggccga 406 |||||||||||||||||||| Sbjct: 124379 gatctgcgcgccgaggccga 124360
>ref|XM_799551.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506215.19) partial mRNA Length = 4810 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 535 ttgacggccgccgtggtggc 554 |||||||||||||||||||| Sbjct: 1190 ttgacggccgccgtggtggc 1171
>ref|XM_808666.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511285.4) partial mRNA Length = 1905 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 535 ttgacggccgccgtggtggc 554 |||||||||||||||||||| Sbjct: 1190 ttgacggccgccgtggtggc 1171
>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 267509 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 tgctcatctcctcctcctcgtaca 496 |||| ||||||||||||||||||| Sbjct: 89350 tgcttatctcctcctcctcgtaca 89373
>emb|AL021046.4|SPAC3G9 S.pombe chromosome I cosmid c3G9 Length = 38096 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 atactacgttgtttcctctccatc 34 |||||||||||||| ||||||||| Sbjct: 13853 atactacgttgtttactctccatc 13876
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 tgctcctggtcgcgatggccatga 274 ||||||||| |||||||||||||| Sbjct: 20701156 tgctcctggccgcgatggccatga 20701133
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 gtgctcatctcctcctcctc 491 |||||||||||||||||||| Sbjct: 27980990 gtgctcatctcctcctcctc 27981009
>gb|AC007463.3| Homo sapiens BAC clone RP11-244L12 from 2, complete sequence Length = 166892 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 407 gcttggggaaccctgccctaatgg 430 ||||||||| |||||||||||||| Sbjct: 34316 gcttggggacccctgccctaatgg 34339
>gb|AF373806.1| Sinorhizobium meliloti GTP cyclohydrolase/3,4-dihydroxy-2-butanone 4-phosphate synthase (ribA) gene, complete cds Length = 1426 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gatctgcgcgccgaggccga 406 |||||||||||||||||||| Sbjct: 1098 gatctgcgcgccgaggccga 1079
>ref|XM_218601.3| PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23311 (predicted) (LOC308607), mRNA Length = 3460 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ggtgctcctggtcgcgatgg 268 |||||||||||||||||||| Sbjct: 264 ggtgctcctggtcgcgatgg 283
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gatctgcgcgccgaggccga 406 |||||||||||||||||||| Sbjct: 6166149 gatctgcgcgccgaggccga 6166130
>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_A08 Length = 119304 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 gtgctcatctcctcctcctc 491 |||||||||||||||||||| Sbjct: 24652 gtgctcatctcctcctcctc 24671
>dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0427B07 Length = 172058 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 tgctcctggtcgcgatggccatga 274 ||||||||| |||||||||||||| Sbjct: 123563 tgctcctggccgcgatggccatga 123540
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 gtgctcatctcctcctcctc 491 |||||||||||||||||||| Sbjct: 108442 gtgctcatctcctcctcctc 108461
>ref|XM_317857.2| Anopheles gambiae str. PEST ENSANGP00000014192 (ENSANGG00000011703), partial mRNA Length = 1299 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 gctcatctcctcctcctcgt 493 |||||||||||||||||||| Sbjct: 864 gctcatctcctcctcctcgt 845
>ref|XM_309208.2| Anopheles gambiae str. PEST ENSANGP00000005397 (ENSANGG00000004156), partial mRNA Length = 7809 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 agttgtagctgttgatgccg 162 |||||||||||||||||||| Sbjct: 2962 agttgtagctgttgatgccg 2943
>dbj|AK072932.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144J15, full insert sequence Length = 842 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 tgctcctggtcgcgatggccatga 274 ||||||||| |||||||||||||| Sbjct: 591 tgctcctggccgcgatggccatga 614
>dbj|AK070960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068B22, full insert sequence Length = 1485 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 gtgctcatctcctcctcctc 491 |||||||||||||||||||| Sbjct: 216 gtgctcatctcctcctcctc 235
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 tggaattgtagccgagcttgagct 454 |||||||| ||||||||||||||| Sbjct: 4568087 tggaattgaagccgagcttgagct 4568064
>gb|AF006190.1|AF006190 Heliothis virescens GABA-gated chloride channel isoform a1 mRNA, partial cds Length = 669 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 550 gtggccatggtgagcacggtggtg 573 |||| ||||||||||||||||||| Sbjct: 498 gtggtcatggtgagcacggtggtg 475 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,854,687 Number of Sequences: 3902068 Number of extensions: 4854687 Number of successful extensions: 94986 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94498 Number of HSP's gapped (non-prelim): 488 length of query: 587 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 564 effective length of database: 17,143,297,704 effective search space: 9668819905056 effective search space used: 9668819905056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
