ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2d17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL37A_YEAST (P49166) 60S ribosomal protein L37-A (L35) (YP55) 44 3e-04
2RL37_SCHMA (O44125) 60S ribosomal protein L37 44 5e-04
3RL37_CANAL (Q9P836) 60S ribosomal protein L37 (Fragment) 43 0.001
4RL37B_SCHPO (P05733) 60S ribosomal protein L37-B (L37-2) (YL27) 42 0.001
5RL37A_SCHPO (P59289) 60S ribosomal protein L37-A (L37-1) 42 0.001
6RL37_EMENI (Q9C0T1) 60S ribosomal protein L37 42 0.002
7RL37B_YEAST (P51402) 60S ribosomal protein L37-B (L35) (YP55) 41 0.003
8RL371_DROME (Q9VXX8) Probable 60S ribosomal protein L37-A 40 0.005
9RL37_SPOFR (Q962S7) 60S ribosomal protein L37 38 0.022
10RL37_ARATH (Q43292) 60S ribosomal protein L37 38 0.029
11RL37_RAT (P61928) 60S ribosomal protein L37 37 0.038
12RL37_MOUSE (Q9D823) 60S ribosomal protein L37 37 0.038
13RL37_ICTPU (Q90YT1) 60S ribosomal protein L37 37 0.038
14RL37_HUMAN (P61927) 60S ribosomal protein L37 (G1.16) 37 0.038
15RL37_BOVIN (P79244) 60S ribosomal protein L37 (Fragment) 37 0.038
16RL372_DROME (Q9W1U6) Probable 60S ribosomal protein L37-B 37 0.038
17RL37_CAEEL (P49622) 60S ribosomal protein L37 34 0.32
18RL37_METJA (P54011) 50S ribosomal protein L37e 32 2.1
19RL37_THEVO (Q97BU6) 50S ribosomal protein L37e 30 4.7
20RL37_THEAC (Q9HIT7) 50S ribosomal protein L37e 30 4.7

>RL37A_YEAST (P49166) 60S ribosomal protein L37-A (L35) (YP55)|
          Length = 87

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIRK*STGGEA 293
           SFHVQK TCSSCGYPAA+ R  + G +A
Sbjct: 25  SFHVQKKTCSSCGYPAAKTRSYNWGAKA 52



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>RL37_SCHMA (O44125) 60S ribosomal protein L37|
          Length = 87

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 16/21 (76%), Positives = 20/21 (95%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIRK 314
           S+H+QK TCSSCGYP+AR+RK
Sbjct: 25  SYHIQKKTCSSCGYPSARLRK 45



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>RL37_CANAL (Q9P836) 60S ribosomal protein L37 (Fragment)|
          Length = 88

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIR 317
           SFHVQK TCSSCGYPAA++R
Sbjct: 24  SFHVQKKTCSSCGYPAAKMR 43



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>RL37B_SCHPO (P05733) 60S ribosomal protein L37-B (L37-2) (YL27)|
          Length = 90

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIRK*STGGEA 293
           SFH+QKSTC+ CGYPAA+ R  + G +A
Sbjct: 25  SFHIQKSTCACCGYPAAKTRSYNWGAKA 52



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>RL37A_SCHPO (P59289) 60S ribosomal protein L37-A (L37-1)|
          Length = 88

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIRK*STGGEA 293
           SFH+QKSTC+ CGYPAA+ R  + G +A
Sbjct: 25  SFHIQKSTCACCGYPAAKTRSYNWGAKA 52



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>RL37_EMENI (Q9C0T1) 60S ribosomal protein L37|
          Length = 92

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 15/21 (71%), Positives = 20/21 (95%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIRK 314
           S+H+QKSTC++CGYPAA+ RK
Sbjct: 26  SYHIQKSTCANCGYPAAKTRK 46



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>RL37B_YEAST (P51402) 60S ribosomal protein L37-B (L35) (YP55)|
          Length = 87

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIR 317
           SFHVQK TCSSCGYP+A+ R
Sbjct: 25  SFHVQKKTCSSCGYPSAKTR 44



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>RL371_DROME (Q9VXX8) Probable 60S ribosomal protein L37-A|
          Length = 93

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIR 317
           S+H+QKSTC+ CGYPAA++R
Sbjct: 26  SYHIQKSTCAQCGYPAAKLR 45



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>RL37_SPOFR (Q962S7) 60S ribosomal protein L37|
          Length = 91

 Score = 38.1 bits (87), Expect = 0.022
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIR 317
           S+H+QKS C+ CGYPAA++R
Sbjct: 25  SYHIQKSKCAQCGYPAAKLR 44



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>RL37_ARATH (Q43292) 60S ribosomal protein L37|
          Length = 95

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIR 317
           SFH+QKS CS+C YPAAR R
Sbjct: 26  SFHIQKSRCSACAYPAARKR 45



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>RL37_RAT (P61928) 60S ribosomal protein L37|
          Length = 96

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIRK 314
           ++H+QKSTC  CGYPA R RK
Sbjct: 25  AYHLQKSTCGKCGYPAKRKRK 45



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>RL37_MOUSE (Q9D823) 60S ribosomal protein L37|
          Length = 96

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIRK 314
           ++H+QKSTC  CGYPA R RK
Sbjct: 25  AYHLQKSTCGKCGYPAKRKRK 45



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>RL37_ICTPU (Q90YT1) 60S ribosomal protein L37|
          Length = 96

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIRK 314
           ++H+QKSTC  CGYPA R RK
Sbjct: 25  AYHLQKSTCGKCGYPAKRKRK 45



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>RL37_HUMAN (P61927) 60S ribosomal protein L37 (G1.16)|
          Length = 96

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIRK 314
           ++H+QKSTC  CGYPA R RK
Sbjct: 25  AYHLQKSTCGKCGYPAKRKRK 45



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>RL37_BOVIN (P79244) 60S ribosomal protein L37 (Fragment)|
          Length = 92

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIRK 314
           ++H+QKSTC  CGYPA R RK
Sbjct: 25  AYHLQKSTCGKCGYPAKRKRK 45



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>RL372_DROME (Q9W1U6) Probable 60S ribosomal protein L37-B|
          Length = 89

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIR 317
           S+H+QKS CS CGYPAA+ R
Sbjct: 26  SYHLQKSKCSQCGYPAAKTR 45



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>RL37_CAEEL (P49622) 60S ribosomal protein L37|
          Length = 91

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIRK*STGGEAI 290
           SFH+QK  C+SCGY  A+ R  + G ++I
Sbjct: 26  SFHIQKKRCASCGYQDAKKRTYNWGAKSI 54



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>RL37_METJA (P54011) 50S ribosomal protein L37e|
          Length = 61

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -1

Query: 376 SFHVQKSTCSSCGYPAARIRK 314
           ++HV+K  C++CG+P  R+RK
Sbjct: 27  AYHVRKKRCAACGFPNKRMRK 47



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>RL37_THEVO (Q97BU6) 50S ribosomal protein L37e|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 382 HLSFHVQKSTCSSCGYPAARIR 317
           H +++V+   CS CG+PA RIR
Sbjct: 25  HHTYNVRTKRCSHCGFPAPRIR 46



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>RL37_THEAC (Q9HIT7) 50S ribosomal protein L37e|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 382 HLSFHVQKSTCSSCGYPAARIR 317
           H +++V+   CS CG+PA RIR
Sbjct: 25  HHTYNVRTKRCSHCGFPAPRIR 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,319,939
Number of Sequences: 219361
Number of extensions: 944205
Number of successful extensions: 2581
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2581
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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